Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0017459.1

Orthogroup ID

OG0005034

Physical Location & Seq

Genomic Coordinates Reverse (-)

12593 .. 13498

Gene Structure 906 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0017459.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

atggcgcctccatctctcttcattctcctcatcgccgcctctctcaccctcttcaatccatcctcctccgccgccgcctccgcttctcccccaaccacctcacccccatcaccgccacctcttccaccacctccatcaccatcgccacctccacctccacctccatcaccatcaccatcaccaccgccgccgtcacctccatcatcacctccgccgccgcgatcaagaatctcgagaccatcacgacttccgccgtcgcctccatctccactgcctccgcctcctcctgcggcaagaccgacggggcagcaactcaacaacatcgtcgacgctttgatcggctcaggcgacttcgggagctgggtcaacatcatcacggccgcgaatccgctcgcccttccactgagcgccaccgtcttcgtgcctcaaaacgacgccgcgtcgcgcgtgccctccgccgacccgttcttgttgccttaccacgtggtgccgcagcggctcaccttcgccgacctccgcctcttcaagaccaactctcgcctcccgactctccttcccggaaagttcatcgtcgtcaccagcaattccgagtccaatttcaccgtcgacgactcgactatcacccagcccgacgtctacgtcaccgccaacgtcgtcgtccacggcgtcgctagggttcttgattactctgtttacggcgtcgcaaccgtcgactctatgccgaagccaaagcagcagcagtcgccggcgccgccatcgccgccgagtccagggctgcttcttcccgccggcgtcagcatcccaccgtggaagtccggtgcgacaacgccgtgcctctgcgttcagtttccggttggattaatggtggcttgtgcagttttggggtggaggaattacatttggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fasciclin

Protein Analysis

301

Amino Acids

31.31

Weight (kDa)

9.37

Isoelectric Point (pI)

90.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005034)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30800 AT4G12950 AT4G29980
fragaria_vesca	FvH4_1g24910 FvH4_3g11440 FvH4_3g19970 FvH4_5g18240 FvH4_5g21920 FvH4_6g29350
malus_domestica	MD00G1097400.v1.1
prunus_persica	Prupe.4G102300_v2.0.a1
pyrus_communis	pycom05g24700
rosa_laevigata	RLG00000031490 RLG00000032358
rosa_multiflora	Rmu_sc0017459.1_g000003
rosa_roxburghii	Rroxscaffold_1G00059350
rosa_rugosa	Rorug04G0431000 Rorug04G0432100 Rorug05G0042200
rosa_samantha	Rh4BG224100 Rh4CG235000 Rh4DG220900 Rh5BG055700 Rh5CG067100 Rh5CG067200 Rh5CG078900 Rh5DG054700 Rh5DG066900
rosa_wichuraiana	Rw4G019090 Rw5G011840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	638
AatII	GACGTC	1 cut(s)	636
AccB1I	GGYRCC	3 cut(s)	4, 487, 748
AccBSI	CCGCTC	1 cut(s)	391
AccI	GTMKAC	4 cut(s)	327, 606, 636, 711
AccII	CGCG	5 cut(s)	220, 383, 440, 445, 447
AcoI	YGGCCR	1 cut(s)	378
AcvI	CACGTG	1 cut(s)	484
AcyI	GRCGYC	7 cut(s)	5, 435, 633, 666, 699, 749, 792
AdeI	CACNNNGTG	1 cut(s)	487
AfiI	CCNNNNNNNGG	1 cut(s)	770
AgsI	TTSAA	2 cut(s)	55, 526
AhdI	GACNNNNNGTC	1 cut(s)	439
AjnI	CCWGG	1 cut(s)	769
AluBI	AGCT	1 cut(s)	360
AluI	AGCT	1 cut(s)	360
Alw26I	GTCTC	1 cut(s)	229
Ama87I	CYCGRG	1 cut(s)	232
AoxI	GGCC	1 cut(s)	378
ApeKI	GCWGC	5 cut(s)	307, 493, 733, 736, 775
AseI	ATTAAT	1 cut(s)	860
AspLEI	GCGC	4 cut(s)	7, 410, 447, 751
AsuC2I	CCSGG	1 cut(s)	558
AvaI	CYCGRG	1 cut(s)	232
BaeGI	GKGCMC	1 cut(s)	453
BanI	GGYRCC	3 cut(s)	4, 487, 748
BbrPI	CACGTG	1 cut(s)	484
BbsI	GAAGAC	1 cut(s)	409
BbvI	GCAGC	5 cut(s)	319, 505, 745, 748, 762
BceAI	ACGGC	6 cut(s)	175, 238, 393, 679, 712, 814
BciT130I	CCWGG	1 cut(s)	771
BcnI	CCSGG	1 cut(s)	558
BcoDI	GTCTC	1 cut(s)	229
BfaI	CTAG	1 cut(s)	672
BfoI	RGCGCY	3 cut(s)	8, 411, 752
BglI	GCCNNNNNGGC	1 cut(s)	496
Bme1390I	CCNGG	2 cut(s)	558, 771
BmeRI	GACNNNNNGTC	1 cut(s)	439
BmeT110I	CYCGRG	1 cut(s)	232
BmiI	GGNNCC	3 cut(s)	6, 489, 750
BmrFI	CCNGG	2 cut(s)	558, 771
BmsI	GCATC	1 cut(s)	807
BpiI	GAAGAC	1 cut(s)	409
Bpu10I	CCTNAGC	1 cut(s)	343
BpuMI	CCSGG	1 cut(s)	558
BsaAI	YACGTR	1 cut(s)	484
BsaHI	GRCGYC	7 cut(s)	5, 435, 633, 666, 699, 749, 792
BsaI	GGTCTC	1 cut(s)	229
BsaJI	CCNNGG	3 cut(s)	661, 770, 806
BsaWI	WCCGGW	2 cut(s)	815, 850
Bsc4I	CCNNNNNNNGG	1 cut(s)	770
Bse118I	RCCGGY	2 cut(s)	745, 788
BseBI	CCWGG	1 cut(s)	771
BseDI	CCNNGG	3 cut(s)	661, 770, 806
BseGI	GGATG	2 cut(s)	59, 798
BseLI	CCNNNNNNNGG	1 cut(s)	770
BseMII	CTCAG	2 cut(s)	357, 395
BseRI	GAGGAG	3 cut(s)	17, 55, 273
BseSI	GKGCMC	1 cut(s)	453
BseX3I	CGGCCG	1 cut(s)	378
BseXI	GCAGC	5 cut(s)	319, 505, 745, 748, 762
BseYI	CCCAGC	2 cut(s)	360, 624
BsgI	GTGCAG	1 cut(s)	894
Bsh1236I	CGCG	5 cut(s)	220, 383, 440, 445, 447
Bsh1285I	CGRYCG	1 cut(s)	381
BshFI	GGCC	1 cut(s)	380
BshNI	GGYRCC	3 cut(s)	4, 487, 748
BsiEI	CGRYCG	1 cut(s)	381
BsiHKCI	CYCGRG	1 cut(s)	232
BsiSI	CCGG	5 cut(s)	558, 746, 789, 816, 851
BslI	CCNNNNNNNGG	1 cut(s)	770
BsmAI	GTCTC	1 cut(s)	229
BsnI	GGCC	1 cut(s)	380
Bso31I	GGTCTC	1 cut(s)	229
BsoBI	CYCGRG	1 cut(s)	232
Bsp1286I	GDGCHC	1 cut(s)	453
Bsp143I	GATC	2 cut(s)	221, 336
BspANI	GGCC	1 cut(s)	380
BspCNI	CTCAG	2 cut(s)	356, 396
BspFNI	CGCG	5 cut(s)	220, 383, 440, 445, 447
BspLI	GGNNCC	3 cut(s)	6, 489, 750
BspT107I	GGYRCC	3 cut(s)	4, 487, 748
BspTNI	GGTCTC	1 cut(s)	229
BsrBI	CCGCTC	1 cut(s)	391
BsrFI	RCCGGY	2 cut(s)	745, 788
BssAI	RCCGGY	2 cut(s)	745, 788
BssECI	CCNNGG	3 cut(s)	661, 770, 806
BssMI	GATC	2 cut(s)	221, 336
BssNI	GRCGYC	7 cut(s)	5, 435, 633, 666, 699, 749, 792
Bst2UI	CCWGG	1 cut(s)	771
Bst4CI	ACNGT	4 cut(s)	415, 604, 709, 807
Bst6I	CTCTTC	4 cut(s)	23, 56, 126, 527
BstACI	GRCGYC	7 cut(s)	5, 435, 633, 666, 699, 749, 792
BstBAI	YACGTR	1 cut(s)	484
BstC8I	GCNNGC	4 cut(s)	393, 449, 747, 790
BstDEI	CTNAG	2 cut(s)	343, 404
BstDSI	CCRYGG	2 cut(s)	661, 806
BstF5I	GGATG	2 cut(s)	59, 798
BstFNI	CGCG	5 cut(s)	220, 383, 440, 445, 447
BstH2I	RGCGCY	3 cut(s)	8, 411, 752
BstHHI	GCGC	4 cut(s)	7, 410, 447, 751
BstKTI	GATC	2 cut(s)	224, 339
BstMAI	GTCTC	1 cut(s)	229
BstMBI	GATC	2 cut(s)	221, 336
BstMCI	CGRYCG	1 cut(s)	381
BstMWI	GCNNNNNNNGC	7 cut(s)	80, 496, 733, 742, 751, 757, 760
BstNI	CCWGG	1 cut(s)	771
BstSCI	CCNGG	2 cut(s)	556, 769
BstSLI	GKGCMC	1 cut(s)	453
BstUI	CGCG	5 cut(s)	220, 383, 440, 445, 447
BstV1I	GCAGC	5 cut(s)	319, 505, 745, 748, 762
BstV2I	GAAGAC	1 cut(s)	409
BstZI	CGGCCG	1 cut(s)	378
BsuRI	GGCC	1 cut(s)	380
BtgI	CCRYGG	2 cut(s)	661, 806
BtgZI	GCGATG	3 cut(s)	16, 126, 741
BtsCI	GGATG	2 cut(s)	59, 798
BtsI	GCAGTG	1 cut(s)	269
BtsIMutI	CAGTG	2 cut(s)	269, 401
Cac8I	GCNNGC	4 cut(s)	393, 449, 747, 790
CfoI	GCGC	4 cut(s)	7, 410, 447, 751
Cfr10I	RCCGGY	2 cut(s)	745, 788
CseI	GACGC	6 cut(s)	338, 429, 443, 655, 688, 781
CviJI	RGCY	8 cut(s)	342, 360, 380, 499, 628, 727, 775, 869
CviKI_1	RGCY	8 cut(s)	342, 360, 380, 499, 628, 727, 775, 869
DdeI	CTNAG	2 cut(s)	343, 404
DinI	GGCGCC	2 cut(s)	6, 750
DpnI	GATC	2 cut(s)	223, 338
DpnII	GATC	2 cut(s)	221, 336
DraIII	CACNNNGTG	1 cut(s)	487
DrdI	GACNNNNNNGTC	1 cut(s)	638
DriI	GACNNNNNGTC	1 cut(s)	439
DseDI	GACNNNNNNGTC	1 cut(s)	638
EaeI	YGGCCR	1 cut(s)	378
EagI	CGGCCG	1 cut(s)	378
Eam1104I	CTCTTC	4 cut(s)	23, 56, 126, 527
Eam1105I	GACNNNNNGTC	1 cut(s)	439
EarI	CTCTTC	4 cut(s)	23, 56, 126, 527
EciI	GGCGGA	6 cut(s)	58, 201, 240, 267, 445, 506
EclXI	CGGCCG	1 cut(s)	378
Eco31I	GGTCTC	1 cut(s)	229
Eco52I	CGGCCG	1 cut(s)	378
Eco72I	CACGTG	1 cut(s)	484
Eco88I	CYCGRG	1 cut(s)	232
EcoRII	CCWGG	1 cut(s)	769
EgeI	GGCGCC	2 cut(s)	6, 750
EheI	GGCGCC	2 cut(s)	6, 750
FaiI	YATR	1 cut(s)	719
FauI	CCCGC	1 cut(s)	793
FblI	GTMKAC	4 cut(s)	327, 606, 636, 711
FokI	GGATG	2 cut(s)	46, 785
FspBI	CTAG	1 cut(s)	672
GlaI	GCGC	4 cut(s)	6, 409, 446, 750
GsaI	CCCAGC	2 cut(s)	364, 628
HaeII	RGCGCY	3 cut(s)	8, 411, 752
HaeIII	GGCC	1 cut(s)	380
HapII	CCGG	5 cut(s)	558, 746, 789, 816, 851
HgaI	GACGC	6 cut(s)	338, 429, 443, 655, 688, 781
HhaI	GCGC	4 cut(s)	7, 410, 447, 751
Hin1I	GRCGYC	7 cut(s)	5, 435, 633, 666, 699, 749, 792
Hin6I	GCGC	4 cut(s)	5, 408, 445, 749
HinP1I	GCGC	4 cut(s)	5, 408, 445, 749
HincII	GTYRAC	4 cut(s)	328, 367, 607, 712
HindII	GTYRAC	4 cut(s)	328, 367, 607, 712
HinfI	GANTC	7 cut(s)	228, 385, 547, 590, 611, 713, 766
HpaII	CCGG	5 cut(s)	558, 746, 789, 816, 851
Hpy166II	GTNNAC	7 cut(s)	328, 367, 607, 637, 661, 694, 712
Hpy188I	TCNGA	1 cut(s)	589
Hpy188III	TCNNGA	8 cut(s)	225, 232, 234, 243, 355, 526, 544, 680
Hpy8I	GTNNAC	7 cut(s)	328, 367, 607, 637, 661, 694, 712
HpyAV	CCTTC	3 cut(s)	407, 514, 563
HpyCH4III	ACNGT	4 cut(s)	415, 604, 709, 807
HpyCH4IV	ACGT	4 cut(s)	483, 633, 639, 651
HpyCH4V	TGCA	1 cut(s)	875
HpyF10VI	GCNNNNNNNGC	7 cut(s)	80, 496, 733, 742, 751, 757, 760
HpyF3I	CTNAG	2 cut(s)	343, 404
HpySE526I	ACGT	4 cut(s)	483, 633, 639, 651
Hsp92I	GRCGYC	7 cut(s)	5, 435, 633, 666, 699, 749, 792
HspAI	GCGC	4 cut(s)	5, 408, 445, 749
KasI	GGCGCC	2 cut(s)	4, 748
KroI	GCCGGC	2 cut(s)	745, 788
KroNI	GCCGGC	2 cut(s)	747, 790
Kzo9I	GATC	2 cut(s)	221, 336
LmnI	GCTCC	1 cut(s)	357
Lsp1109I	GCAGC	5 cut(s)	319, 505, 745, 748, 762
LweI	GCATC	1 cut(s)	807
MaeI	CTAG	1 cut(s)	672
MaeII	ACGT	4 cut(s)	483, 633, 639, 651
MaeIII	GTNAC	3 cut(s)	192, 574, 640
MalI	GATC	2 cut(s)	223, 338
MbiI	CCGCTC	1 cut(s)	391
MboI	GATC	2 cut(s)	221, 336
MboII	GAAGA	6 cut(s)	10, 43, 113, 409, 514, 773
MhlI	GDGCHC	1 cut(s)	453
MluCI	AATT	3 cut(s)	583, 595, 892
Mly113I	GGCGCC	2 cut(s)	5, 749
MlyI	GAGTC	5 cut(s)	541, 599, 605, 707, 775
MmeI	TCCRAC	1 cut(s)	835
MreI	CGCCGGCG	2 cut(s)	745, 788
MroNI	GCCGGC	2 cut(s)	745, 788
MseI	TTAA	1 cut(s)	860
MspA1I	CMGCKG	1 cut(s)	496
MspI	CCGG	5 cut(s)	558, 746, 789, 816, 851
MspR9I	CCNGG	2 cut(s)	558, 771
MvaI	CCWGG	1 cut(s)	771
MvnI	CGCG	5 cut(s)	220, 383, 440, 445, 447
MwoI	GCNNNNNNNGC	7 cut(s)	80, 496, 733, 742, 751, 757, 760
NaeI	GCCGGC	2 cut(s)	747, 790
NarI	GGCGCC	2 cut(s)	5, 749
NciI	CCSGG	1 cut(s)	558
NdeII	GATC	2 cut(s)	221, 336
NgoMIV	GCCGGC	2 cut(s)	745, 788
NlaIV	GGNNCC	3 cut(s)	6, 489, 750
NmeAIII	GCCGAG	1 cut(s)	789
NmuCI	GTSAC	3 cut(s)	192, 574, 640
PaeR7I	CTCGAG	1 cut(s)	232
PcsI	WCGNNNNNNNCGW	3 cut(s)	345, 663, 708
PdiI	GCCGGC	2 cut(s)	747, 790
PfeI	GAWTC	2 cut(s)	228, 385
PfoI	TCCNGGA	1 cut(s)	556
PleI	GAGTC	5 cut(s)	541, 598, 605, 707, 774
PluTI	GGCGCC	2 cut(s)	8, 752
PmaCI	CACGTG	1 cut(s)	484
PmlI	CACGTG	1 cut(s)	484
PpsI	GAGTC	5 cut(s)	541, 598, 605, 707, 774
Ppu21I	YACGTR	1 cut(s)	484
PshBI	ATTAAT	1 cut(s)	860
Psp6I	CCWGG	1 cut(s)	769
PspCI	CACGTG	1 cut(s)	484
PspFI	CCCAGC	2 cut(s)	360, 624
PspGI	CCWGG	1 cut(s)	769
PspN4I	GGNNCC	3 cut(s)	6, 489, 750
SalI	GTCGAC	3 cut(s)	326, 605, 710
SaqAI	TTAA	1 cut(s)	860
Sau3AI	GATC	2 cut(s)	221, 336
SchI	GAGTC	5 cut(s)	541, 599, 605, 707, 775
ScrFI	CCNGG	2 cut(s)	558, 771
SduI	GDGCHC	1 cut(s)	453
SfaNI	GCATC	1 cut(s)	807
SfoI	GGCGCC	2 cut(s)	6, 750
Sfr274I	CTCGAG	1 cut(s)	232
SgrAI	CRCCGGYG	2 cut(s)	745, 788
SgrDI	CGTCGACG	2 cut(s)	326, 605
SlaI	CTCGAG	1 cut(s)	232
SmlI	CTYRAG	1 cut(s)	232
SmoI	CTYRAG	1 cut(s)	232
Sse9I	AATT	3 cut(s)	583, 595, 892
SspDI	GGCGCC	2 cut(s)	4, 748
SspMI	CTAG	1 cut(s)	672
StyD4I	CCNGG	2 cut(s)	556, 769
TaaI	ACNGT	4 cut(s)	415, 604, 709, 807
TaiI	ACGT	4 cut(s)	486, 636, 642, 654
TaqI	TCGA	5 cut(s)	233, 327, 606, 614, 711
TaqII	GACCGA	1 cut(s)	313
TasI	AATT	3 cut(s)	583, 595, 892
TfiI	GAWTC	2 cut(s)	228, 385
Tru1I	TTAA	1 cut(s)	860
Tru9I	TTAA	1 cut(s)	860
TscAI	CASTG	2 cut(s)	276, 408
TseFI	GTSAC	3 cut(s)	192, 574, 640
TseI	GCWGC	5 cut(s)	307, 493, 733, 736, 775
Tsp45I	GTSAC	3 cut(s)	192, 574, 640
TspDTI	ATGAA	2 cut(s)	10, 556
TspRI	CASTG	2 cut(s)	276, 408
VspI	ATTAAT	1 cut(s)	860
XhoI	CTCGAG	1 cut(s)	232
XmiI	GTMKAC	4 cut(s)	327, 606, 636, 711
XspI	CTAG	1 cut(s)	672
ZraI	GACGTC	1 cut(s)	634

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.