Rh4CG235000

Four repeated domains in the Fasciclin I family of proteins, present in many other contexts.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0005034
Physical Location & Seq
Reverse (-)
47862694 .. 47863374
681 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG235000.1

Sequence Viewer

Length: 681 bp
ATGCCAAACGACGCCGTGGTACGCATGCAAGCCTCAGGGCCGCCGTCGCTTCCGGCCAGGGGAAAAGTCGACTACCTTGTCCCGCCAGAGATCGGCGGCTTCGGAAGTTTCTCTGCGGTGGATCCGCTCTCTCTTGCCATCTTTGCCGGTTCTGGAAACCACGCCTTCTCCGGTCAGCCGTCGCCTGCATCTTCACTGCCGCAGTCTCCTCCAGCGACGCCGCAGCAACTTGAGGTGGCAGCGATCGGCTCCAGTGACCGGGGGATCTTGGAGAACATGATGGACAGCGCGAGTCCACTCTGGCTTCCACGGATCTCGACGGTGTTTATATATGAGAACGACGGCGTACCGGACCCCCACTTGTTCTTTTCTCCGGACCACGTGGTGCCTGAGCGACTCACCTTCGCCGACCTCCGCCTCTTGGAGACCAATTCACGCCTCCCGACGCTTCATCCTGGTAAATTCCTAATCATAACCAACAACTCCGAGGTGAATTTCACCGTGGACGACTCTCGTCTCAGTGAGCCAGACGCTTACGTCACCCGAGAGCGCGTTGCACATCGCGTGGCACATGTTTCCCCGGCCAACGTCTCCGACCCCCAGTCCAAGAGCTTTTGGTACCCCATTCTTCAACCGCTTGTCAAATATGGTTTGGCCCTTATCGCTGTACTAGACTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

226

Amino Acids

24.48

Weight (kDa)

5.12

Isoelectric Point (pI)

50.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 77, 536
Acc65I GGTACC 1 cut(s) 618
AccB1I GGYRCC 2 cut(s) 385, 618
AccBSI CCGCTC 1 cut(s) 127
AccI GTMKAC 1 cut(s) 69
AccII CGCG 3 cut(s) 290, 552, 564
AccIII TCCGGA 1 cut(s) 373
AciI CCGC 9 cut(s) 41, 83, 96, 116, 125, 200, 221, 415, 635
AclWI GGATC 4 cut(s) 116, 129, 272, 320
AcoI YGGCCR 2 cut(s) 54, 582
AcsI RAATTY 2 cut(s) 461, 493
AcvI CACGTG 1 cut(s) 382
AcyI GRCGYC 2 cut(s) 12, 218
AdeI CACNNNGTG 1 cut(s) 385
AfaI GTAC 4 cut(s) 21, 348, 620, 669
AfiI CCNNNNNNNGG 4 cut(s) 59, 92, 258, 421
AflIII ACRYGT 1 cut(s) 571
AgsI TTSAA 1 cut(s) 632
AhdI GACNNNNNGTC 1 cut(s) 601
AjnI CCWGG 2 cut(s) 56, 454
AluBI AGCT 1 cut(s) 612
AluI AGCT 1 cut(s) 612
Alw26I GTCTC 4 cut(s) 210, 419, 521, 595
AlwI GGATC 4 cut(s) 116, 129, 272, 320
Ama87I CYCGRG 1 cut(s) 543
Aor13HI TCCGGA 1 cut(s) 373
AoxI GGCC 4 cut(s) 38, 54, 582, 654
ApeKI GCWGC 2 cut(s) 223, 239
ApoI RAATTY 2 cut(s) 461, 493
Asp718I GGTACC 1 cut(s) 618
AspLEI GCGC 2 cut(s) 290, 552
AspS9I GGNCC 4 cut(s) 38, 352, 376, 655
AsuC2I CCSGG 2 cut(s) 260, 581
AsuHPI GGTGA 4 cut(s) 391, 490, 502, 532
AvaI CYCGRG 1 cut(s) 543
AvaII GGWCC 2 cut(s) 352, 376
AxyI CCTNAGG 1 cut(s) 34
BamHI GGATCC 1 cut(s) 121
BanI GGYRCC 2 cut(s) 385, 618
BbrPI CACGTG 1 cut(s) 382
BbvI GCAGC 2 cut(s) 235, 251
BccI CCATC 2 cut(s) 146, 274
BceAI ACGGC 3 cut(s) 28, 163, 358
BciT130I CCWGG 2 cut(s) 58, 456
BcnI CCSGG 2 cut(s) 260, 581
BcoDI GTCTC 4 cut(s) 210, 419, 521, 595
BfaI CTAG 2 cut(s) 671, 679
BisI GCNGC 6 cut(s) 41, 97, 200, 221, 224, 240
BlsI GCNGC 6 cut(s) 42, 98, 201, 222, 225, 241
Bme1390I CCNGG 4 cut(s) 58, 260, 456, 581
Bme18I GGWCC 2 cut(s) 352, 376
BmeRI GACNNNNNGTC 1 cut(s) 601
BmeT110I CYCGRG 1 cut(s) 543
BmgT120I GGNCC 4 cut(s) 38, 352, 376, 655
BmiI GGNNCC 5 cut(s) 123, 250, 354, 387, 620
BmrFI CCNGG 4 cut(s) 58, 260, 456, 581
BmrI ACTGGG 1 cut(s) 595
BmsI GCATC 1 cut(s) 197
BmuI ACTGGG 1 cut(s) 595
BoxI GACNNNNGTC 1 cut(s) 513
BpmI CTGGAG 2 cut(s) 195, 235
Bpu10I CCTNAGC 1 cut(s) 390
BpuEI CTTGAG 1 cut(s) 251
BpuMI CCSGG 2 cut(s) 260, 581
BsaAI YACGTR 1 cut(s) 382
BsaHI GRCGYC 2 cut(s) 12, 218
BsaI GGTCTC 1 cut(s) 419
BsaJI CCNNGG 7 cut(s) 15, 57, 259, 308, 486, 501, 579
BsaWI WCCGGW 3 cut(s) 170, 349, 373
BsaXI ACNNNNNCTCC 2 cut(s) 152, 182
Bsc4I CCNNNNNNNGG 4 cut(s) 59, 92, 258, 421
Bse118I RCCGGY 1 cut(s) 146
Bse1I ACTGG 2 cut(s) 252, 601
Bse21I CCTNAGG 1 cut(s) 34
BseAI TCCGGA 1 cut(s) 373
BseBI CCWGG 2 cut(s) 58, 456
BseDI CCNNGG 7 cut(s) 15, 57, 259, 308, 486, 501, 579
BseGI GGATG 1 cut(s) 451
BseLI CCNNNNNNNGG 4 cut(s) 59, 92, 258, 421
BseMII CTCAG 3 cut(s) 48, 381, 532
BseNI ACTGG 2 cut(s) 252, 601
BseRI GAGGAG 1 cut(s) 198
BseXI GCAGC 2 cut(s) 235, 251
Bsh1236I CGCG 3 cut(s) 290, 552, 564
Bsh1285I CGRYCG 1 cut(s) 246
BshFI GGCC 4 cut(s) 40, 56, 584, 656
BshNI GGYRCC 2 cut(s) 385, 618
BsiEI CGRYCG 1 cut(s) 246
BsiHKCI CYCGRG 1 cut(s) 543
BsiSI CCGG 7 cut(s) 53, 147, 171, 259, 350, 374, 581
BslFI GGGAC 1 cut(s) 65
BslI CCNNNNNNNGG 4 cut(s) 59, 92, 258, 421
BsmAI GTCTC 4 cut(s) 210, 419, 521, 595
BsmBI CGTCTC 2 cut(s) 521, 595
BsmFI GGGAC 1 cut(s) 65
BsnI GGCC 4 cut(s) 40, 56, 584, 656
Bso31I GGTCTC 1 cut(s) 419
BsoBI CYCGRG 1 cut(s) 543
Bsp13I TCCGGA 1 cut(s) 373
Bsp143I GATC 5 cut(s) 90, 121, 243, 264, 312
BspACI CCGC 9 cut(s) 41, 83, 96, 116, 125, 200, 221, 415, 635
BspANI GGCC 4 cut(s) 40, 56, 584, 656
BspCNI CTCAG 3 cut(s) 47, 382, 531
BspEI TCCGGA 1 cut(s) 373
BspFNI CGCG 3 cut(s) 290, 552, 564
BspLI GGNNCC 5 cut(s) 123, 250, 354, 387, 620
BspPI GGATC 4 cut(s) 116, 129, 272, 320
BspT107I GGYRCC 2 cut(s) 385, 618
BspTNI GGTCTC 1 cut(s) 419
BsrBI CCGCTC 1 cut(s) 127
BsrFI RCCGGY 1 cut(s) 146
BsrI ACTGG 2 cut(s) 252, 601
BssAI RCCGGY 1 cut(s) 146
BssECI CCNNGG 7 cut(s) 15, 57, 259, 308, 486, 501, 579
BssMI GATC 5 cut(s) 90, 121, 243, 264, 312
BssNI GRCGYC 2 cut(s) 12, 218
Bst2UI CCWGG 2 cut(s) 58, 456
Bst4CI ACNGT 2 cut(s) 322, 502
BstACI GRCGYC 2 cut(s) 12, 218
BstBAI YACGTR 1 cut(s) 382
BstC8I GCNNGC 3 cut(s) 26, 30, 186
BstDEI CTNAG 3 cut(s) 34, 390, 518
BstDSI CCRYGG 3 cut(s) 15, 308, 501
BstF5I GGATG 1 cut(s) 451
BstFNI CGCG 3 cut(s) 290, 552, 564
BstHHI GCGC 2 cut(s) 290, 552
BstKTI GATC 5 cut(s) 93, 124, 246, 267, 315
BstMAI GTCTC 4 cut(s) 210, 419, 521, 595
BstMBI GATC 5 cut(s) 90, 121, 243, 264, 312
BstMCI CGRYCG 1 cut(s) 246
BstMWI GCNNNNNNNGC 3 cut(s) 46, 143, 662
BstNI CCWGG 2 cut(s) 58, 456
BstNSI RCATGY 2 cut(s) 28, 575
BstPAI GACNNNNGTC 1 cut(s) 513
BstSCI CCNGG 4 cut(s) 56, 258, 454, 579
BstUI CGCG 3 cut(s) 290, 552, 564
BstV1I GCAGC 2 cut(s) 235, 251
BstX2I RGATCY 3 cut(s) 121, 264, 312
BstYI RGATCY 3 cut(s) 121, 264, 312
Bsu36I CCTNAGG 1 cut(s) 34
BsuRI GGCC 4 cut(s) 40, 56, 584, 656
BtgI CCRYGG 3 cut(s) 15, 308, 501
BtgZI GCGATG 1 cut(s) 545
BtsCI GGATG 1 cut(s) 451
BtsI GCAGTG 1 cut(s) 194
BtsIMutI CAGTG 3 cut(s) 194, 259, 526
Cac8I GCNNGC 3 cut(s) 26, 30, 186
CfoI GCGC 2 cut(s) 290, 552
Cfr10I RCCGGY 1 cut(s) 146
Cfr13I GGNCC 4 cut(s) 38, 352, 376, 655
CseI GACGC 4 cut(s) 20, 226, 454, 539
Csp6I GTAC 4 cut(s) 20, 347, 619, 668
CviAII CATG 3 cut(s) 25, 277, 572
CviQI GTAC 4 cut(s) 20, 347, 619, 668
DdeI CTNAG 3 cut(s) 34, 390, 518
DpnI GATC 5 cut(s) 92, 123, 245, 266, 314
DpnII GATC 5 cut(s) 90, 121, 243, 264, 312
DraIII CACNNNGTG 1 cut(s) 385
DrdI GACNNNNNNGTC 2 cut(s) 77, 536
DriI GACNNNNNGTC 1 cut(s) 601
DseDI GACNNNNNNGTC 2 cut(s) 77, 536
EaeI YGGCCR 2 cut(s) 54, 582
Eam1105I GACNNNNNGTC 1 cut(s) 601
EciI GGCGGA 1 cut(s) 404
Eco31I GGTCTC 1 cut(s) 419
Eco47I GGWCC 2 cut(s) 352, 376
Eco72I CACGTG 1 cut(s) 382
Eco81I CCTNAGG 1 cut(s) 34
Eco88I CYCGRG 1 cut(s) 543
EcoRII CCWGG 2 cut(s) 56, 454
Esp3I CGTCTC 2 cut(s) 521, 595
FaeI CATG 3 cut(s) 28, 280, 575
FaiI YATR 8 cut(s) 26, 278, 329, 331, 333, 473, 573, 648
FaqI GGGAC 1 cut(s) 65
FatI CATG 3 cut(s) 24, 276, 571
FauI CCCGC 1 cut(s) 90
FblI GTMKAC 1 cut(s) 69
Fnu4HI GCNGC 6 cut(s) 41, 97, 200, 221, 224, 240
FokI GGATG 1 cut(s) 438
Fsp4HI GCNGC 6 cut(s) 41, 97, 200, 221, 224, 240
FspBI CTAG 2 cut(s) 671, 679
GlaI GCGC 2 cut(s) 289, 551
GluI GCNGC 6 cut(s) 41, 97, 200, 221, 224, 240
GsuI CTGGAG 2 cut(s) 195, 235
HaeIII GGCC 4 cut(s) 40, 56, 584, 656
HapII CCGG 7 cut(s) 53, 147, 171, 259, 350, 374, 581
HgaI GACGC 4 cut(s) 20, 226, 454, 539
HhaI GCGC 2 cut(s) 290, 552
Hin1I GRCGYC 2 cut(s) 12, 218
Hin1II CATG 3 cut(s) 28, 280, 575
Hin6I GCGC 2 cut(s) 288, 550
HinP1I GCGC 2 cut(s) 288, 550
HincII GTYRAC 1 cut(s) 70
HindII GTYRAC 1 cut(s) 70
HinfI GANTC 3 cut(s) 292, 396, 509
HpaII CCGG 7 cut(s) 53, 147, 171, 259, 350, 374, 581
HphI GGTGA 4 cut(s) 391, 490, 502, 532
Hpy166II GTNNAC 3 cut(s) 70, 296, 505
Hpy188I TCNGA 3 cut(s) 104, 487, 595
Hpy188III TCNNGA 4 cut(s) 153, 316, 374, 442
Hpy8I GTNNAC 3 cut(s) 70, 296, 505
Hpy99I CGWCG 7 cut(s) 14, 49, 184, 220, 322, 344, 448
HpyAV CCTTC 2 cut(s) 175, 412
HpyCH4III ACNGT 2 cut(s) 322, 502
HpyCH4IV ACGT 3 cut(s) 381, 537, 588
HpyCH4V TGCA 3 cut(s) 28, 188, 557
HpyF10VI GCNNNNNNNGC 3 cut(s) 46, 143, 662
HpyF3I CTNAG 3 cut(s) 34, 390, 518
HpySE526I ACGT 3 cut(s) 381, 537, 588
Hsp92I GRCGYC 2 cut(s) 12, 218
Hsp92II CATG 3 cut(s) 28, 280, 575
HspAI GCGC 2 cut(s) 288, 550
Kpn2I TCCGGA 1 cut(s) 373
KpnI GGTACC 1 cut(s) 622
Kzo9I GATC 5 cut(s) 90, 121, 243, 264, 312
LmnI GCTCC 1 cut(s) 254
Lsp1109I GCAGC 2 cut(s) 235, 251
LweI GCATC 1 cut(s) 197
MaeI CTAG 2 cut(s) 671, 679
MaeII ACGT 3 cut(s) 381, 537, 588
MaeIII GTNAC 2 cut(s) 254, 538
MalI GATC 5 cut(s) 92, 123, 245, 266, 314
MbiI CCGCTC 1 cut(s) 127
MboI GATC 5 cut(s) 90, 121, 243, 264, 312
MboII GAAGA 2 cut(s) 183, 620
MflI RGATCY 3 cut(s) 121, 264, 312
MluCI AATT 3 cut(s) 430, 461, 493
MlyI GAGTC 3 cut(s) 301, 390, 503
MmeI TCCRAC 1 cut(s) 618
MnlI CCTC 7 cut(s) 43, 219, 226, 422, 428, 449, 481
MroI TCCGGA 1 cut(s) 373
MspI CCGG 7 cut(s) 53, 147, 171, 259, 350, 374, 581
MspR9I CCNGG 4 cut(s) 58, 260, 456, 581
MvaI CCWGG 2 cut(s) 58, 456
MvnI CGCG 3 cut(s) 290, 552, 564
MwoI GCNNNNNNNGC 3 cut(s) 46, 143, 662
NciI CCSGG 2 cut(s) 260, 581
NdeII GATC 5 cut(s) 90, 121, 243, 264, 312
NlaIII CATG 3 cut(s) 28, 280, 575
NlaIV GGNNCC 5 cut(s) 123, 250, 354, 387, 620
NmuCI GTSAC 2 cut(s) 254, 538
NspI RCATGY 2 cut(s) 28, 575
PaeI GCATGC 1 cut(s) 28
PciI ACATGT 1 cut(s) 571
PkrI GCNGC 6 cut(s) 42, 98, 201, 222, 225, 241
Ple19I CGATCG 1 cut(s) 246
PleI GAGTC 3 cut(s) 300, 390, 503
PmaCI CACGTG 1 cut(s) 382
PmlI CACGTG 1 cut(s) 382
PpsI GAGTC 3 cut(s) 300, 390, 503
Ppu21I YACGTR 1 cut(s) 382
PscI ACATGT 1 cut(s) 571
PshAI GACNNNNGTC 1 cut(s) 513
Psp6I CCWGG 2 cut(s) 56, 454
PspCI CACGTG 1 cut(s) 382
PspGI CCWGG 2 cut(s) 56, 454
PspN4I GGNNCC 5 cut(s) 123, 250, 354, 387, 620
PspPI GGNCC 4 cut(s) 38, 352, 376, 655
PsuI RGATCY 3 cut(s) 121, 264, 312
PvuI CGATCG 1 cut(s) 246
RsaI GTAC 4 cut(s) 21, 348, 620, 669
RsaNI GTAC 4 cut(s) 20, 347, 619, 668
SalI GTCGAC 1 cut(s) 68
SatI GCNGC 6 cut(s) 41, 97, 200, 221, 224, 240
Sau3AI GATC 5 cut(s) 90, 121, 243, 264, 312
Sau96I GGNCC 4 cut(s) 38, 352, 376, 655
SchI GAGTC 3 cut(s) 301, 390, 503
ScrFI CCNGG 4 cut(s) 58, 260, 456, 581
SetI ASST 9 cut(s) 78, 237, 384, 404, 414, 492, 540, 591, 614
SfaNI GCATC 1 cut(s) 197
SinI GGWCC 2 cut(s) 352, 376
SmlI CTYRAG 1 cut(s) 230
SmoI CTYRAG 1 cut(s) 230
SphI GCATGC 1 cut(s) 28
Sse9I AATT 3 cut(s) 430, 461, 493
SsiI CCGC 9 cut(s) 41, 83, 96, 116, 125, 200, 221, 415, 635
SspMI CTAG 2 cut(s) 671, 679
StyD4I CCNGG 4 cut(s) 56, 258, 454, 579
TaaI ACNGT 2 cut(s) 322, 502
TaiI ACGT 3 cut(s) 384, 540, 591
TaqI TCGA 2 cut(s) 69, 317
TasI AATT 3 cut(s) 430, 461, 493
TatI WGTACW 1 cut(s) 667
TauI GCSGC 4 cut(s) 43, 99, 202, 223
TscAI CASTG 3 cut(s) 201, 259, 526
TseFI GTSAC 2 cut(s) 254, 538
TseI GCWGC 2 cut(s) 223, 239
Tsp45I GTSAC 2 cut(s) 254, 538
TspDTI ATGAA 1 cut(s) 440
TspGWI ACGGA 1 cut(s) 325
TspRI CASTG 3 cut(s) 201, 259, 526
VpaK11BI GGWCC 2 cut(s) 352, 376
XapI RAATTY 2 cut(s) 461, 493
XceI RCATGY 2 cut(s) 28, 575
XmiI GTMKAC 1 cut(s) 69
XspI CTAG 2 cut(s) 671, 679
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.