Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0005034

Physical Location & Seq

Genomic Coordinates Reverse (-)

5070725 .. 5071024

Gene Structure 300 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG067100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGAGCGCAACCGCCTTCTTGAAGACAAACTATGCAGTGGCACGCATGGCCTCAGGCTCGCTGCCTCCGGCCACGAAATCTACACTGAGGAAAGTCGAGGACATTGTCGAGGCAGAGATCAGCTTTGGAAGCCTGGATAACCTTATCTTTGTGATGAATCCACTTTCTCTTCCTCAGAGCGCCAGCTTTGTTTGCTCTGAAAACGACTCTGTTTTACGCGTCAGTGGCCATCCGTCACCTCTATCATCTGATGATGAGAGTGACGCCACAACAACCGAAGGACCCAAATTTTGTGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

99

Amino Acids

10.46

Weight (kDa)

4.57

Isoelectric Point (pI)

51.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005034)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30800 AT4G12950 AT4G29980
fragaria_vesca	FvH4_1g24910 FvH4_3g11440 FvH4_3g19970 FvH4_5g18240 FvH4_5g21920 FvH4_6g29350
malus_domestica	MD00G1097400.v1.1
prunus_persica	Prupe.4G102300_v2.0.a1
pyrus_communis	pycom05g24700
rosa_laevigata	RLG00000031490 RLG00000032358
rosa_multiflora	Rmu_sc0017459.1_g000003
rosa_roxburghii	Rroxscaffold_1G00059350
rosa_rugosa	Rorug04G0431000 Rorug04G0432100 Rorug05G0042200
rosa_samantha	Rh4BG224100 Rh4CG235000 Rh4DG220900 Rh5BG055700 Rh5CG067100 Rh5CG067200 Rh5CG078900 Rh5DG054700 Rh5DG066900
rosa_wichuraiana	Rw4G019090 Rw5G011840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	219
AciI	CCGC	1 cut(s)	12
AcoI	YGGCCR	2 cut(s)	69, 226
AcsI	RAATTY	1 cut(s)	287
AcyI	GRCGYC	1 cut(s)	264
AflIII	ACRYGT	1 cut(s)	217
AgsI	TTSAA	1 cut(s)	22
AjnI	CCWGG	1 cut(s)	132
AluBI	AGCT	2 cut(s)	123, 186
AluI	AGCT	2 cut(s)	123, 186
AoxI	GGCC	3 cut(s)	48, 69, 226
ApeKI	GCWGC	1 cut(s)	61
ApoI	RAATTY	1 cut(s)	287
ArsI	GACNNNNNNTTYG	1 cut(s)	273
AspLEI	GCGC	2 cut(s)	8, 182
AspS9I	GGNCC	1 cut(s)	281
AsuHPI	GGTGA	1 cut(s)	228
AvaII	GGWCC	1 cut(s)	281
AxyI	CCTNAGG	1 cut(s)	52
BalI	TGGCCA	1 cut(s)	228
BbsI	GAAGAC	1 cut(s)	29
BbvI	GCAGC	1 cut(s)	48
BccI	CCATC	1 cut(s)	237
BciT130I	CCWGG	1 cut(s)	134
BfoI	RGCGCY	1 cut(s)	183
BisI	GCNGC	1 cut(s)	62
BlsI	GCNGC	1 cut(s)	63
Bme1390I	CCNGG	1 cut(s)	134
Bme18I	GGWCC	1 cut(s)	281
BmgT120I	GGNCC	1 cut(s)	281
BmiI	GGNNCC	1 cut(s)	283
BmrFI	CCNGG	1 cut(s)	134
BpiI	GAAGAC	1 cut(s)	29
BsaHI	GRCGYC	1 cut(s)	264
Bse21I	CCTNAGG	1 cut(s)	52
BseBI	CCWGG	1 cut(s)	134
BseGI	GGATG	1 cut(s)	229
BseMII	CTCAG	3 cut(s)	66, 77, 188
BseXI	GCAGC	1 cut(s)	48
Bsh1236I	CGCG	1 cut(s)	219
BshFI	GGCC	3 cut(s)	50, 71, 228
BsiSI	CCGG	1 cut(s)	68
BsnI	GGCC	3 cut(s)	50, 71, 228
Bsp143I	GATC	1 cut(s)	117
BspACI	CCGC	1 cut(s)	12
BspANI	GGCC	3 cut(s)	50, 71, 228
BspCNI	CTCAG	3 cut(s)	65, 78, 187
BspFNI	CGCG	1 cut(s)	219
BspLI	GGNNCC	1 cut(s)	283
BssMI	GATC	1 cut(s)	117
BssNI	GRCGYC	1 cut(s)	264
Bst2UI	CCWGG	1 cut(s)	134
Bst6I	CTCTTC	1 cut(s)	174
BstACI	GRCGYC	1 cut(s)	264
BstC8I	GCNNGC	3 cut(s)	43, 59, 184
BstDEI	CTNAG	3 cut(s)	52, 86, 174
BstF5I	GGATG	1 cut(s)	229
BstFNI	CGCG	1 cut(s)	219
BstH2I	RGCGCY	1 cut(s)	183
BstHHI	GCGC	2 cut(s)	8, 182
BstKTI	GATC	1 cut(s)	120
BstMBI	GATC	1 cut(s)	117
BstMWI	GCNNNNNNNGC	4 cut(s)	47, 129, 192, 225
BstNI	CCWGG	1 cut(s)	134
BstSCI	CCNGG	1 cut(s)	132
BstUI	CGCG	1 cut(s)	219
BstV1I	GCAGC	1 cut(s)	48
BstV2I	GAAGAC	1 cut(s)	29
Bsu36I	CCTNAGG	1 cut(s)	52
BsuRI	GGCC	3 cut(s)	50, 71, 228
BtsCI	GGATG	1 cut(s)	229
BtsI	GCAGTG	1 cut(s)	42
BtsIMutI	CAGTG	3 cut(s)	42, 83, 229
Cac8I	GCNNGC	3 cut(s)	43, 59, 184
CfoI	GCGC	2 cut(s)	8, 182
Cfr13I	GGNCC	1 cut(s)	281
CseI	GACGC	2 cut(s)	208, 272
CviAII	CATG	1 cut(s)	46
CviJI	RGCY	7 cut(s)	50, 57, 71, 123, 132, 186, 228
CviKI_1	RGCY	7 cut(s)	50, 57, 71, 123, 132, 186, 228
DdeI	CTNAG	3 cut(s)	52, 86, 174
DpnI	GATC	1 cut(s)	119
DpnII	GATC	1 cut(s)	117
EaeI	YGGCCR	2 cut(s)	69, 226
Eam1104I	CTCTTC	1 cut(s)	174
EarI	CTCTTC	1 cut(s)	174
Eco47I	GGWCC	1 cut(s)	281
Eco81I	CCTNAGG	1 cut(s)	52
EcoO109I	RGGNCCY	1 cut(s)	281
EcoRII	CCWGG	1 cut(s)	132
FaeI	CATG	1 cut(s)	49
FaiI	YATR	2 cut(s)	33, 47
FatI	CATG	1 cut(s)	45
Fnu4HI	GCNGC	1 cut(s)	62
FokI	GGATG	1 cut(s)	216
Fsp4HI	GCNGC	1 cut(s)	62
GlaI	GCGC	2 cut(s)	7, 181
GluI	GCNGC	1 cut(s)	62
HaeII	RGCGCY	1 cut(s)	183
HaeIII	GGCC	3 cut(s)	50, 71, 228
HapII	CCGG	1 cut(s)	68
HgaI	GACGC	2 cut(s)	208, 272
HhaI	GCGC	2 cut(s)	8, 182
Hin1I	GRCGYC	1 cut(s)	264
Hin1II	CATG	1 cut(s)	49
Hin6I	GCGC	2 cut(s)	6, 180
HinP1I	GCGC	2 cut(s)	6, 180
HinfI	GANTC	2 cut(s)	157, 206
HpaII	CCGG	1 cut(s)	68
HphI	GGTGA	1 cut(s)	228
Hpy188I	TCNGA	3 cut(s)	177, 199, 250
Hpy188III	TCNNGA	1 cut(s)	19
HpyAV	CCTTC	2 cut(s)	25, 272
HpyCH4V	TGCA	1 cut(s)	35
HpyF10VI	GCNNNNNNNGC	4 cut(s)	47, 129, 192, 225
HpyF3I	CTNAG	3 cut(s)	52, 86, 174
Hsp92I	GRCGYC	1 cut(s)	264
Hsp92II	CATG	1 cut(s)	49
HspAI	GCGC	2 cut(s)	6, 180
Kzo9I	GATC	1 cut(s)	117
LpnPI	CCDG	5 cut(s)	39, 81, 119, 146, 196
Lsp1109I	GCAGC	1 cut(s)	48
MaeIII	GTNAC	2 cut(s)	234, 260
MalI	GATC	1 cut(s)	119
MboI	GATC	1 cut(s)	117
MboII	GAAGA	2 cut(s)	34, 161
MlsI	TGGCCA	1 cut(s)	228
MluCI	AATT	1 cut(s)	287
MluI	ACGCGT	1 cut(s)	217
MluNI	TGGCCA	1 cut(s)	228
MlyI	GAGTC	1 cut(s)	200
MnlI	CCTC	7 cut(s)	61, 75, 81, 91, 103, 183, 249
Mox20I	TGGCCA	1 cut(s)	228
MscI	TGGCCA	1 cut(s)	228
Msp20I	TGGCCA	1 cut(s)	228
MspI	CCGG	1 cut(s)	68
MspR9I	CCNGG	1 cut(s)	134
MvaI	CCWGG	1 cut(s)	134
MvnI	CGCG	1 cut(s)	219
MwoI	GCNNNNNNNGC	4 cut(s)	47, 129, 192, 225
NdeII	GATC	1 cut(s)	117
NlaIII	CATG	1 cut(s)	49
NlaIV	GGNNCC	1 cut(s)	283
NmuCI	GTSAC	2 cut(s)	234, 260
PfeI	GAWTC	1 cut(s)	157
PflFI	GACNNNGTC	1 cut(s)	104
PkrI	GCNGC	1 cut(s)	63
PleI	GAGTC	1 cut(s)	200
PpsI	GAGTC	1 cut(s)	200
PpuMI	RGGWCCY	1 cut(s)	281
Psp5II	RGGWCCY	1 cut(s)	281
Psp6I	CCWGG	1 cut(s)	132
PspGI	CCWGG	1 cut(s)	132
PspN4I	GGNNCC	1 cut(s)	283
PspPI	GGNCC	1 cut(s)	281
PspPPI	RGGWCCY	1 cut(s)	281
PsyI	GACNNNGTC	1 cut(s)	104
SatI	GCNGC	1 cut(s)	62
Sau3AI	GATC	1 cut(s)	117
Sau96I	GGNCC	1 cut(s)	281
SchI	GAGTC	1 cut(s)	200
ScrFI	CCNGG	1 cut(s)	134
SetI	ASST	4 cut(s)	125, 144, 188, 241
SinI	GGWCC	1 cut(s)	281
Sse9I	AATT	1 cut(s)	287
SsiI	CCGC	1 cut(s)	12
StyD4I	CCNGG	1 cut(s)	132
TaqI	TCGA	2 cut(s)	96, 108
TasI	AATT	1 cut(s)	287
TfiI	GAWTC	1 cut(s)	157
TscAI	CASTG	3 cut(s)	42, 90, 229
TseFI	GTSAC	2 cut(s)	234, 260
TseI	GCWGC	1 cut(s)	61
Tsp45I	GTSAC	2 cut(s)	234, 260
TspDTI	ATGAA	1 cut(s)	170
TspGWI	ACGGA	1 cut(s)	222
TspRI	CASTG	3 cut(s)	42, 90, 229
Tth111I	GACNNNGTC	1 cut(s)	104
VpaK11BI	GGWCC	1 cut(s)	281
XapI	RAATTY	1 cut(s)	287

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.