Rw5G011840

Four repeated domains in the Fasciclin I family of proteins, present in many other contexts.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0005034
Physical Location & Seq
Reverse (-)
13671747 .. 13672622
876 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G011840.1

Sequence Viewer

Length: 876 bp
ATGGCGCCACCATCTCTCTTCCTTCTCCTCATCACCGCCTCTCTCACCCTCTTCAATCCATCCTCCTCCGCCGCCGCCTCCGCTTCTCCCCCAACCACCTCACCCCCATCACCGCCACCACAACCACCTCTTCCACCACCTCCGTCACCATCACCACCGCCGCCGCCGCCGTCACCTCCATCATCACCGCCGCCGCCGCGATCAAGAATCTCAAGACCATCACGACTTCCGCCGTCGCCTCCATCTCCACTGCCTCCGCCTCCTCCGGCCGCAAGAGCGACGGGGCAGCAACTCAACAACATCATCGACGCTTTGATCGGCTCAGGCGACTTCGGGAGCTGGGTCAACATCATCACGGCCACAAATCCGCTCGCCCTTCCACTGAGCGCCACCGTCTTCGTGCCTCAAAACGACGCCGTGACGCGCGTGCCCGCCACCGACCCGTTCCTGTTGCCTTACCACGTGGTGCCTCAGCGGCTCACCTTCGCCGACCTCCGCCTCTTCAAGACCAACTCTCGCCTCCCTACTCTCCTTCCTGGAAAGTTCATCGTCGTCACCAGCAATTCCGAGTCCAATTTCACCGTCGACGACTCGACTATCACCCAGCCCGACGTCTACGTCACCGCCAATGTCGTCGTCCACGGCGTCGCAACCGTTCTTGATTACTCTGTTTACGGCGTCGCAACCGTCGACTCTATGCCGAAGCCAAAGCAGCAGCCGTCGCCATCGCCGCCGAGTCCAGGGCAGCTTCTTCCCACCGGCGTCAGCATCCCGCCTTGGAAGTCCGGTGCGACAACGCCGTGCCTCTGCGTTCAGTTTCCGGTTGGATTAATGGTGGCTTGTGCAGTTTTGGGGTTGAGGAATTACATTTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

291

Amino Acids

30.42

Weight (kDa)

9.15

Isoelectric Point (pI)

80.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fasciclin PF02469 122 - 220 1.2e-10 Fasciclin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 617
AatII GACGTC 1 cut(s) 615
AccB1I GGYRCC 2 cut(s) 4, 466
AccBSI CCGCTC 1 cut(s) 370
AccI GTMKAC 3 cut(s) 585, 615, 690
AccII CGCG 3 cut(s) 199, 424, 426
AcoI YGGCCR 2 cut(s) 267, 357
AcvI CACGTG 1 cut(s) 463
AcyI GRCGYC 6 cut(s) 5, 414, 612, 645, 678, 762
AdeI CACNNNGTG 1 cut(s) 466
AfiI CCNNNNNNNGG 1 cut(s) 740
AgsI TTSAA 2 cut(s) 55, 505
AjnI CCWGG 2 cut(s) 535, 739
AluBI AGCT 2 cut(s) 339, 748
AluI AGCT 2 cut(s) 339, 748
AoxI GGCC 2 cut(s) 267, 357
ApeKI GCWGC 4 cut(s) 286, 712, 715, 745
AseI ATTAAT 1 cut(s) 830
AspLEI GCGC 3 cut(s) 7, 389, 426
BaeGI GKGCMC 1 cut(s) 432
BanI GGYRCC 2 cut(s) 4, 466
BbrPI CACGTG 1 cut(s) 463
BbsI GAAGAC 1 cut(s) 388
BbvCI CCTCAGC 1 cut(s) 471
BbvI GCAGC 4 cut(s) 298, 724, 727, 757
BccI CCATC 8 cut(s) 19, 67, 115, 157, 187, 226, 250, 733
BceAI ACGGC 8 cut(s) 154, 217, 372, 401, 658, 691, 703, 784
BciT130I CCWGG 2 cut(s) 537, 741
BfoI RGCGCY 2 cut(s) 8, 390
BglI GCCNNNNNGGC 1 cut(s) 475
Bme1390I CCNGG 2 cut(s) 537, 741
BmiI GGNNCC 2 cut(s) 6, 468
BmrFI CCNGG 2 cut(s) 537, 741
BmsI GCATC 1 cut(s) 777
BpiI GAAGAC 1 cut(s) 388
Bpu10I CCTNAGC 2 cut(s) 322, 471
BpuEI CTTGAG 1 cut(s) 196
BsaAI YACGTR 1 cut(s) 463
BsaHI GRCGYC 6 cut(s) 5, 414, 612, 645, 678, 762
BsaJI CCNNGG 3 cut(s) 640, 740, 776
BsaWI WCCGGW 2 cut(s) 785, 820
Bsc4I CCNNNNNNNGG 1 cut(s) 740
Bse118I RCCGGY 1 cut(s) 758
BseBI CCWGG 2 cut(s) 537, 741
BseDI CCNNGG 3 cut(s) 640, 740, 776
BseGI GGATG 2 cut(s) 59, 768
BseLI CCNNNNNNNGG 1 cut(s) 740
BseMII CTCAG 3 cut(s) 336, 374, 485
BseRI GAGGAG 3 cut(s) 17, 55, 252
BseSI GKGCMC 1 cut(s) 432
BseX3I CGGCCG 1 cut(s) 267
BseXI GCAGC 4 cut(s) 298, 724, 727, 757
BseYI CCCAGC 2 cut(s) 339, 603
BsgI GTGCAG 1 cut(s) 864
Bsh1236I CGCG 3 cut(s) 199, 424, 426
Bsh1285I CGRYCG 1 cut(s) 270
BshFI GGCC 2 cut(s) 269, 359
BshNI GGYRCC 2 cut(s) 4, 466
BsiEI CGRYCG 1 cut(s) 270
BsiSI CCGG 4 cut(s) 266, 759, 786, 821
BslI CCNNNNNNNGG 1 cut(s) 740
BsnI GGCC 2 cut(s) 269, 359
Bsp1286I GDGCHC 1 cut(s) 432
Bsp143I GATC 2 cut(s) 200, 315
BspANI GGCC 2 cut(s) 269, 359
BspCNI CTCAG 3 cut(s) 335, 375, 484
BspFNI CGCG 3 cut(s) 199, 424, 426
BspLI GGNNCC 2 cut(s) 6, 468
BspT107I GGYRCC 2 cut(s) 4, 466
BsrBI CCGCTC 1 cut(s) 370
BsrFI RCCGGY 1 cut(s) 758
BssAI RCCGGY 1 cut(s) 758
BssECI CCNNGG 3 cut(s) 640, 740, 776
BssMI GATC 2 cut(s) 200, 315
BssNI GRCGYC 6 cut(s) 5, 414, 612, 645, 678, 762
BssT1I CCWWGG 1 cut(s) 776
Bst2UI CCWGG 2 cut(s) 537, 741
Bst4CI ACNGT 4 cut(s) 394, 583, 655, 688
Bst6I CTCTTC 4 cut(s) 23, 56, 135, 506
BstACI GRCGYC 6 cut(s) 5, 414, 612, 645, 678, 762
BstBAI YACGTR 1 cut(s) 463
BstC8I GCNNGC 3 cut(s) 372, 428, 432
BstDEI CTNAG 3 cut(s) 322, 383, 471
BstDSI CCRYGG 1 cut(s) 640
BstF5I GGATG 2 cut(s) 59, 768
BstFNI CGCG 3 cut(s) 199, 424, 426
BstH2I RGCGCY 2 cut(s) 8, 390
BstHHI GCGC 3 cut(s) 7, 389, 426
BstKTI GATC 2 cut(s) 203, 318
BstMBI GATC 2 cut(s) 200, 315
BstMCI CGRYCG 1 cut(s) 270
BstMWI GCNNNNNNNGC 8 cut(s) 80, 166, 196, 275, 475, 712, 721, 730
BstNI CCWGG 2 cut(s) 537, 741
BstSCI CCNGG 2 cut(s) 535, 739
BstSLI GKGCMC 1 cut(s) 432
BstUI CGCG 3 cut(s) 199, 424, 426
BstV1I GCAGC 4 cut(s) 298, 724, 727, 757
BstV2I GAAGAC 1 cut(s) 388
BstZI CGGCCG 1 cut(s) 267
BsuRI GGCC 2 cut(s) 269, 359
BtgI CCRYGG 1 cut(s) 640
BtgZI GCGATG 1 cut(s) 711
BtsCI GGATG 2 cut(s) 59, 768
BtsI GCAGTG 1 cut(s) 248
BtsIMutI CAGTG 2 cut(s) 248, 380
Cac8I GCNNGC 3 cut(s) 372, 428, 432
CfoI GCGC 3 cut(s) 7, 389, 426
Cfr10I RCCGGY 1 cut(s) 758
CseI GACGC 6 cut(s) 317, 422, 430, 634, 667, 751
DdeI CTNAG 3 cut(s) 322, 383, 471
DinI GGCGCC 1 cut(s) 6
DpnI GATC 2 cut(s) 202, 317
DpnII GATC 2 cut(s) 200, 315
DraIII CACNNNGTG 1 cut(s) 466
DrdI GACNNNNNNGTC 1 cut(s) 617
DseDI GACNNNNNNGTC 1 cut(s) 617
EaeI YGGCCR 2 cut(s) 267, 357
EagI CGGCCG 1 cut(s) 267
Eam1104I CTCTTC 4 cut(s) 23, 56, 135, 506
EarI CTCTTC 4 cut(s) 23, 56, 135, 506
EciI GGCGGA 4 cut(s) 58, 219, 246, 485
EclXI CGGCCG 1 cut(s) 267
Eco130I CCWWGG 1 cut(s) 776
Eco52I CGGCCG 1 cut(s) 267
Eco72I CACGTG 1 cut(s) 463
EcoRII CCWGG 2 cut(s) 535, 739
EcoT14I CCWWGG 1 cut(s) 776
EgeI GGCGCC 1 cut(s) 6
EheI GGCGCC 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 776
FaiI YATR 1 cut(s) 698
FauI CCCGC 2 cut(s) 439, 780
FblI GTMKAC 3 cut(s) 585, 615, 690
FokI GGATG 2 cut(s) 46, 755
GlaI GCGC 3 cut(s) 6, 388, 425
GsaI CCCAGC 2 cut(s) 343, 607
HaeII RGCGCY 2 cut(s) 8, 390
HaeIII GGCC 2 cut(s) 269, 359
HapII CCGG 4 cut(s) 266, 759, 786, 821
HgaI GACGC 6 cut(s) 317, 422, 430, 634, 667, 751
HhaI GCGC 3 cut(s) 7, 389, 426
Hin1I GRCGYC 6 cut(s) 5, 414, 612, 645, 678, 762
Hin6I GCGC 3 cut(s) 5, 387, 424
HinP1I GCGC 3 cut(s) 5, 387, 424
HincII GTYRAC 3 cut(s) 346, 586, 691
HindII GTYRAC 3 cut(s) 346, 586, 691
HinfI GANTC 5 cut(s) 207, 569, 590, 692, 736
HpaII CCGG 4 cut(s) 266, 759, 786, 821
Hpy166II GTNNAC 6 cut(s) 346, 586, 616, 640, 673, 691
Hpy188I TCNGA 1 cut(s) 568
Hpy188III TCNNGA 6 cut(s) 204, 213, 222, 334, 505, 659
Hpy8I GTNNAC 6 cut(s) 346, 586, 616, 640, 673, 691
HpyAV CCTTC 4 cut(s) 32, 386, 493, 542
HpyCH4III ACNGT 4 cut(s) 394, 583, 655, 688
HpyCH4IV ACGT 3 cut(s) 462, 612, 618
HpyCH4V TGCA 1 cut(s) 845
HpyF10VI GCNNNNNNNGC 8 cut(s) 80, 166, 196, 275, 475, 712, 721, 730
HpyF3I CTNAG 3 cut(s) 322, 383, 471
HpySE526I ACGT 3 cut(s) 462, 612, 618
Hsp92I GRCGYC 6 cut(s) 5, 414, 612, 645, 678, 762
HspAI GCGC 3 cut(s) 5, 387, 424
KasI GGCGCC 1 cut(s) 4
Kzo9I GATC 2 cut(s) 200, 315
LmnI GCTCC 1 cut(s) 336
Lsp1109I GCAGC 4 cut(s) 298, 724, 727, 757
LweI GCATC 1 cut(s) 777
MaeII ACGT 3 cut(s) 462, 612, 618
MaeIII GTNAC 5 cut(s) 144, 171, 418, 553, 619
MalI GATC 2 cut(s) 202, 317
MbiI CCGCTC 1 cut(s) 370
MboI GATC 2 cut(s) 200, 315
MboII GAAGA 6 cut(s) 10, 43, 122, 388, 493, 743
MhlI GDGCHC 1 cut(s) 432
MluCI AATT 3 cut(s) 562, 574, 862
Mly113I GGCGCC 1 cut(s) 5
MlyI GAGTC 4 cut(s) 578, 584, 686, 745
MmeI TCCRAC 1 cut(s) 805
MseI TTAA 1 cut(s) 830
MspA1I CMGCKG 1 cut(s) 475
MspI CCGG 4 cut(s) 266, 759, 786, 821
MspR9I CCNGG 2 cut(s) 537, 741
MvaI CCWGG 2 cut(s) 537, 741
MvnI CGCG 3 cut(s) 199, 424, 426
MwoI GCNNNNNNNGC 8 cut(s) 80, 166, 196, 275, 475, 712, 721, 730
NarI GGCGCC 1 cut(s) 5
NdeII GATC 2 cut(s) 200, 315
NlaIV GGNNCC 2 cut(s) 6, 468
NmeAIII GCCGAG 1 cut(s) 759
NmuCI GTSAC 5 cut(s) 144, 171, 418, 553, 619
PcsI WCGNNNNNNNCGW 3 cut(s) 324, 642, 687
PfeI GAWTC 1 cut(s) 207
PfoI TCCNGGA 1 cut(s) 535
PleI GAGTC 4 cut(s) 577, 584, 686, 744
PluTI GGCGCC 1 cut(s) 8
PmaCI CACGTG 1 cut(s) 463
PmlI CACGTG 1 cut(s) 463
PpsI GAGTC 4 cut(s) 577, 584, 686, 744
Ppu21I YACGTR 1 cut(s) 463
PshBI ATTAAT 1 cut(s) 830
Psp6I CCWGG 2 cut(s) 535, 739
PspCI CACGTG 1 cut(s) 463
PspFI CCCAGC 2 cut(s) 339, 603
PspGI CCWGG 2 cut(s) 535, 739
PspN4I GGNNCC 2 cut(s) 6, 468
SalI GTCGAC 2 cut(s) 584, 689
SaqAI TTAA 1 cut(s) 830
Sau3AI GATC 2 cut(s) 200, 315
SchI GAGTC 4 cut(s) 578, 584, 686, 745
ScrFI CCNGG 2 cut(s) 537, 741
SduI GDGCHC 1 cut(s) 432
SfaNI GCATC 1 cut(s) 777
SfoI GGCGCC 1 cut(s) 6
SgrAI CRCCGGYG 1 cut(s) 758
SgrDI CGTCGACG 1 cut(s) 584
SmlI CTYRAG 1 cut(s) 211
SmoI CTYRAG 1 cut(s) 211
Sse9I AATT 3 cut(s) 562, 574, 862
SspDI GGCGCC 1 cut(s) 4
StyD4I CCNGG 2 cut(s) 535, 739
StyI CCWWGG 1 cut(s) 776
TaaI ACNGT 4 cut(s) 394, 583, 655, 688
TaiI ACGT 3 cut(s) 465, 615, 621
TaqI TCGA 4 cut(s) 306, 585, 593, 690
TasI AATT 3 cut(s) 562, 574, 862
TfiI GAWTC 1 cut(s) 207
Tru1I TTAA 1 cut(s) 830
Tru9I TTAA 1 cut(s) 830
TscAI CASTG 2 cut(s) 255, 387
TseFI GTSAC 5 cut(s) 144, 171, 418, 553, 619
TseI GCWGC 4 cut(s) 286, 712, 715, 745
Tsp45I GTSAC 5 cut(s) 144, 171, 418, 553, 619
TspDTI ATGAA 1 cut(s) 535
TspGWI ACGGA 1 cut(s) 132
TspRI CASTG 2 cut(s) 255, 387
VspI ATTAAT 1 cut(s) 830
XmiI GTMKAC 3 cut(s) 585, 615, 690
ZraI GACGTC 1 cut(s) 613
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.