Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005034

Physical Location & Seq

Genomic Coordinates Forward (+)

7576642 .. 7577172

Gene Structure 531 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G12950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGAATCTCCTACTATTTTTTCTTCTCTCCACCGTTTCAGTTTTCGCCGTTGTCTCTGGCACGGTGGAGGAGACGGCCCGTGATGTTATTGATGCATTGGCTCATGCCCCTTTTGAAGAATGGTCATCGGTTTTCATAGAAACCAATGACCGGATCCGCGCCGAGGTTATCCCATCTACCCTCTTCATCCCAAACTCTTCCGCCAACGGGAGCGATGATAGACATAAGTTGGCTTCATACCACATTGTTCCTCAGAGGCTTGAGTTTGCAGATCTTCTCTTGAAGCCAAGTAGATCGAGACTACCGACTCTTCTCAACGGCTCCTCCATTCTGGTAACCAACAATTCTGCTACTTCTTTTTCTATCGACGGCGTTCTCATCATCGAACTTGACATCTACGTGGATTCCTTCATAGCCATCCATCGTATTGCATATCCGCTTGATTACACAACTTACGGCGGCGGCTCTAAGCTTATATCGAAATGGCCGCTCTTCACCTTTATGCTTGTTACGGTTGTGTGGTTCATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fasciclin

Protein Analysis

176

Amino Acids

19.61

Weight (kDa)

5.07

Isoelectric Point (pI)

33.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005034)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30800 AT4G12950 AT4G29980
fragaria_vesca	FvH4_1g24910 FvH4_3g11440 FvH4_3g19970 FvH4_5g18240 FvH4_5g21920 FvH4_6g29350
malus_domestica	MD00G1097400.v1.1
prunus_persica	Prupe.4G102300_v2.0.a1
pyrus_communis	pycom05g24700
rosa_laevigata	RLG00000031490 RLG00000032358
rosa_multiflora	Rmu_sc0017459.1_g000003
rosa_roxburghii	Rroxscaffold_1G00059350
rosa_rugosa	Rorug04G0431000 Rorug04G0432100 Rorug05G0042200
rosa_samantha	Rh4BG224100 Rh4CG235000 Rh4DG220900 Rh5BG055700 Rh5CG067100 Rh5CG067200 Rh5CG078900 Rh5DG054700 Rh5DG066900
rosa_wichuraiana	Rw4G019090 Rw5G011840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	490
AccII	CGCG	1 cut(s)	159
AciI	CCGC	6 cut(s)	157, 201, 437, 459, 462, 488
AclWI	GGATC	2 cut(s)	148, 161
AcoI	YGGCCR	1 cut(s)	485
AfiI	CCNNNNNNNGG	3 cut(s)	150, 163, 207
AgsI	TTSAA	2 cut(s)	116, 283
AluBI	AGCT	1 cut(s)	472
AluI	AGCT	1 cut(s)	472
Alw26I	GTCTC	3 cut(s)	58, 65, 292
AlwI	GGATC	2 cut(s)	148, 161
AoxI	GGCC	2 cut(s)	75, 485
AspLEI	GCGC	1 cut(s)	161
AspS9I	GGNCC	1 cut(s)	76
AsuHPI	GGTGA	1 cut(s)	487
BamHI	GGATCC	1 cut(s)	153
BccI	CCATC	3 cut(s)	181, 425, 429
BceAI	ACGGC	5 cut(s)	32, 90, 334, 385, 472
BcoDI	GTCTC	3 cut(s)	58, 65, 292
BglII	AGATCT	1 cut(s)	271
BisI	GCNGC	3 cut(s)	460, 463, 488
BlsI	GCNGC	3 cut(s)	461, 464, 489
BmgT120I	GGNCC	1 cut(s)	76
BmiI	GGNNCC	2 cut(s)	155, 322
BmsI	GCATC	1 cut(s)	82
BpuEI	CTTGAG	1 cut(s)	281
BsaAI	YACGTR	1 cut(s)	400
BsaJI	CCNNGG	1 cut(s)	162
BsaWI	WCCGGW	1 cut(s)	150
BsaXI	ACNNNNNCTCC	2 cut(s)	308, 338
Bsc4I	CCNNNNNNNGG	3 cut(s)	150, 163, 207
BseDI	CCNNGG	1 cut(s)	162
BseGI	GGATG	2 cut(s)	186, 417
BseLI	CCNNNNNNNGG	3 cut(s)	150, 163, 207
BseMII	CTCAG	1 cut(s)	266
BseRI	GAGGAG	2 cut(s)	83, 313
Bsh1236I	CGCG	1 cut(s)	159
BshFI	GGCC	2 cut(s)	77, 487
BsiSI	CCGG	1 cut(s)	151
BslI	CCNNNNNNNGG	3 cut(s)	150, 163, 207
BsmAI	GTCTC	3 cut(s)	58, 65, 292
BsmBI	CGTCTC	1 cut(s)	65
BsnI	GGCC	2 cut(s)	77, 487
Bsp143I	GATC	3 cut(s)	153, 271, 293
BspACI	CCGC	6 cut(s)	157, 201, 437, 459, 462, 488
BspANI	GGCC	2 cut(s)	77, 487
BspCNI	CTCAG	1 cut(s)	265
BspFNI	CGCG	1 cut(s)	159
BspLI	GGNNCC	2 cut(s)	155, 322
BspPI	GGATC	2 cut(s)	148, 161
BspQI	GCTCTTC	1 cut(s)	497
BsrBI	CCGCTC	1 cut(s)	490
BssECI	CCNNGG	1 cut(s)	162
BssMI	GATC	3 cut(s)	153, 271, 293
Bst4CI	ACNGT	3 cut(s)	34, 64, 514
Bst6I	CTCTTC	4 cut(s)	188, 202, 315, 497
BstBAI	YACGTR	1 cut(s)	400
BstDEI	CTNAG	2 cut(s)	252, 468
BstEII	GGTNACC	1 cut(s)	334
BstF5I	GGATG	2 cut(s)	186, 417
BstFNI	CGCG	1 cut(s)	159
BstHHI	GCGC	1 cut(s)	161
BstKTI	GATC	3 cut(s)	156, 274, 296
BstMAI	GTCTC	3 cut(s)	58, 65, 292
BstMBI	GATC	3 cut(s)	153, 271, 293
BstPI	GGTNACC	1 cut(s)	334
BstUI	CGCG	1 cut(s)	159
BstX2I	RGATCY	2 cut(s)	153, 271
BstYI	RGATCY	2 cut(s)	153, 271
BsuRI	GGCC	2 cut(s)	77, 487
BtgZI	GCGATG	1 cut(s)	228
BtsCI	GGATG	2 cut(s)	186, 417
CfoI	GCGC	1 cut(s)	161
Cfr13I	GGNCC	1 cut(s)	76
CviAII	CATG	1 cut(s)	104
DdeI	CTNAG	2 cut(s)	252, 468
DpnI	GATC	3 cut(s)	155, 273, 295
DpnII	GATC	3 cut(s)	153, 271, 293
EaeI	YGGCCR	1 cut(s)	485
Eam1104I	CTCTTC	4 cut(s)	188, 202, 315, 497
EarI	CTCTTC	4 cut(s)	188, 202, 315, 497
EciI	GGCGGA	1 cut(s)	190
Eco91I	GGTNACC	1 cut(s)	334
EcoO65I	GGTNACC	1 cut(s)	334
EcoT22I	ATGCAT	1 cut(s)	97
Esp3I	CGTCTC	1 cut(s)	65
FaeI	CATG	1 cut(s)	107
FaiI	YATR	8 cut(s)	105, 137, 225, 238, 413, 433, 476, 503
FatI	CATG	1 cut(s)	103
Fnu4HI	GCNGC	3 cut(s)	460, 463, 488
FokI	GGATG	2 cut(s)	173, 404
Fsp4HI	GCNGC	3 cut(s)	460, 463, 488
GlaI	GCGC	1 cut(s)	160
GluI	GCNGC	3 cut(s)	460, 463, 488
HaeIII	GGCC	2 cut(s)	77, 487
HapII	CCGG	1 cut(s)	151
HhaI	GCGC	1 cut(s)	161
Hin1II	CATG	1 cut(s)	107
Hin6I	GCGC	1 cut(s)	159
HinP1I	GCGC	1 cut(s)	159
HindIII	AAGCTT	1 cut(s)	470
HinfI	GANTC	3 cut(s)	4, 307, 404
HpaII	CCGG	1 cut(s)	151
HphI	GGTGA	1 cut(s)	487
Hpy188I	TCNGA	1 cut(s)	255
Hpy188III	TCNNGA	2 cut(s)	280, 297
Hpy99I	CGWCG	1 cut(s)	371
HpyAV	CCTTC	1 cut(s)	418
HpyCH4III	ACNGT	3 cut(s)	34, 64, 514
HpyCH4IV	ACGT	1 cut(s)	399
HpyCH4V	TGCA	3 cut(s)	95, 269, 431
HpyF3I	CTNAG	2 cut(s)	252, 468
HpySE526I	ACGT	1 cut(s)	399
Hsp92II	CATG	1 cut(s)	107
HspAI	GCGC	1 cut(s)	159
Kzo9I	GATC	3 cut(s)	153, 271, 293
LguI	GCTCTTC	1 cut(s)	497
LmnI	GCTCC	2 cut(s)	210, 326
LpnPI	CCDG	3 cut(s)	42, 164, 317
LweI	GCATC	1 cut(s)	82
MaeII	ACGT	1 cut(s)	399
MaeIII	GTNAC	2 cut(s)	334, 508
MalI	GATC	3 cut(s)	155, 273, 295
MbiI	CCGCTC	1 cut(s)	490
MboI	GATC	3 cut(s)	153, 271, 293
MboII	GAAGA	7 cut(s)	14, 128, 175, 189, 266, 302, 484
MflI	RGATCY	2 cut(s)	153, 271
MluCI	AATT	1 cut(s)	343
MlyI	GAGTC	1 cut(s)	301
MnlI	CCTC	6 cut(s)	61, 157, 191, 249, 261, 334
Mph1103I	ATGCAT	1 cut(s)	97
MseI	TTAA	1 cut(s)	529
MslI	CAYNNNNRTG	2 cut(s)	398, 500
MspI	CCGG	1 cut(s)	151
MvnI	CGCG	1 cut(s)	159
NdeII	GATC	3 cut(s)	153, 271, 293
NlaIII	CATG	1 cut(s)	107
NlaIV	GGNNCC	2 cut(s)	155, 322
NmeAIII	GCCGAG	1 cut(s)	187
NsiI	ATGCAT	1 cut(s)	97
PciSI	GCTCTTC	1 cut(s)	497
PcsI	WCGNNNNNNNCGW	1 cut(s)	302
PfeI	GAWTC	2 cut(s)	4, 404
PkrI	GCNGC	3 cut(s)	461, 464, 489
PleI	GAGTC	1 cut(s)	301
PpsI	GAGTC	1 cut(s)	301
Ppu21I	YACGTR	1 cut(s)	400
PspEI	GGTNACC	1 cut(s)	334
PspN4I	GGNNCC	2 cut(s)	155, 322
PspPI	GGNCC	1 cut(s)	76
PsuI	RGATCY	2 cut(s)	153, 271
RseI	CAYNNNNRTG	2 cut(s)	398, 500
SapI	GCTCTTC	1 cut(s)	497
SaqAI	TTAA	1 cut(s)	529
SatI	GCNGC	3 cut(s)	460, 463, 488
Sau3AI	GATC	3 cut(s)	153, 271, 293
Sau96I	GGNCC	1 cut(s)	76
SchI	GAGTC	1 cut(s)	301
SetI	ASST	4 cut(s)	168, 402, 474, 500
SfaNI	GCATC	1 cut(s)	82
SmiMI	CAYNNNNRTG	2 cut(s)	398, 500
SmlI	CTYRAG	1 cut(s)	260
SmoI	CTYRAG	1 cut(s)	260
Sse9I	AATT	1 cut(s)	343
SsiI	CCGC	6 cut(s)	157, 201, 437, 459, 462, 488
TaaI	ACNGT	3 cut(s)	34, 64, 514
TaiI	ACGT	1 cut(s)	402
TaqI	TCGA	4 cut(s)	296, 366, 384, 479
TasI	AATT	1 cut(s)	343
TauI	GCSGC	3 cut(s)	462, 465, 490
TfiI	GAWTC	2 cut(s)	4, 404
Tru1I	TTAA	1 cut(s)	529
Tru9I	TTAA	1 cut(s)	529
TspDTI	ATGAA	6 cut(s)	17, 124, 175, 225, 400, 514
Zsp2I	ATGCAT	1 cut(s)	97

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.