FvH4_3g11440

Four repeated domains in the Fasciclin I family of proteins, present in many other contexts.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0005034
Physical Location & Seq
Reverse (-)
6741176 .. 6742012
837 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g11440.t1

Sequence Viewer

Length: 837 bp
ATGGCGCCCAACCACCACCACCCATCACCTTCTCTCTTCCTTCTCCTCATCACCGCCGCCGCCCTCACCCTCCTCAATCCTTCCACCGCCGGCCCCTCCGCCTCTCCCCCAACATCCTCACCACAACCACCACCGCCATCCCCCTCTCCTCCACCTCCATCACCGTCGCCGCCTCCACCTCCTTCACCATCGCCGCCTCCACCTCCTTCACCATCACTACCGCCGCCACCTCCGGCAGCAAGAGCGACGGCGCAGCAAATGAACAACATCGTCGACGCTCTGATCGGCTCCGGCGACTTCGGGAGCTGGGTCAACATCATCACGGCGGCGAATCCGCTCTCCCTCCCACTCAGCGCCACCGTCTTCATGCCGGAAAACGCCGCCGTGTCTCGCCTACCCGTCGCCGACCCGTTCTTGCTGCCTTACCACGTCGTCCCTCAGCGCCTCACCTTCGCCGATCTCCGCCTCTTCAAGAACAACTCTCGCCTCCCGACTCTCCTCCCCGGAAAGTTCATCGTCGTCACCAGCAACACCGAGTCCAATTTCACCGTTGATGACGCCACTATCACCCAGCCCGACGTCTACGTCACCAACAACGTCGTCGTCCACGGCGTCGCGAACGTTCTTGACTACTCTGTTTACGGCGTCGCTACCGTCGACTCTAAGCCGAAGCAGCAACAGCAGCAATCGCCGCCGAGTCCAGGGCAGGTTCCTCCCGCCGGCGTCAACTTGCCGGAGTGGAAGTCCGGTGCGACAACGCCGTGCCTCTGCGTTCAGTTTCCGGTGGGATTCATGGTGGCTTGTGCAGTTCTGGTGTTGAGGAATCAGATTTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

279

Amino Acids

29.14

Weight (kDa)

6.49

Isoelectric Point (pI)

76.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fasciclin PF02469 111 - 209 3e-11 Fasciclin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 584
AatII GACGTC 1 cut(s) 582
Acc36I ACCTGC 1 cut(s) 697
AccB1I GGYRCC 1 cut(s) 4
AccBSI CCGCTC 1 cut(s) 337
AccI GTMKAC 3 cut(s) 273, 582, 657
AccII CGCG 1 cut(s) 617
AclI AACGTT 1 cut(s) 621
AcyI GRCGYC 6 cut(s) 5, 558, 579, 612, 645, 723
AfiI CCNNNNNNNGG 2 cut(s) 701, 719
AgsI TTSAA 1 cut(s) 472
AjiI CACGTC 1 cut(s) 430
AjnI CCWGG 1 cut(s) 700
AluBI AGCT 1 cut(s) 306
AluI AGCT 1 cut(s) 306
Alw26I GTCTC 1 cut(s) 393
AoxI GGCC 1 cut(s) 91
ApeKI GCWGC 5 cut(s) 236, 253, 418, 673, 682
AspLEI GCGC 4 cut(s) 7, 253, 356, 444
AspS9I GGNCC 1 cut(s) 92
AsuC2I CCSGG 1 cut(s) 504
BanI GGYRCC 1 cut(s) 4
BbsI GAAGAC 1 cut(s) 355
BbvCI CCTCAGC 1 cut(s) 438
BbvI GCAGC 5 cut(s) 248, 265, 405, 685, 694
BccI CCATC 5 cut(s) 31, 145, 166, 196, 220
BceAI ACGGC 6 cut(s) 264, 339, 368, 625, 658, 745
BciT130I CCWGG 1 cut(s) 702
BcnI CCSGG 1 cut(s) 504
BcoDI GTCTC 1 cut(s) 393
BfoI RGCGCY 3 cut(s) 8, 357, 445
BfuAI ACCTGC 1 cut(s) 697
Bme1390I CCNGG 2 cut(s) 504, 702
BmgBI CACGTC 1 cut(s) 430
BmgT120I GGNCC 1 cut(s) 92
BmiI GGNNCC 4 cut(s) 6, 94, 289, 711
BmrFI CCNGG 2 cut(s) 504, 702
BpiI GAAGAC 1 cut(s) 355
Bpu10I CCTNAGC 1 cut(s) 438
BpuMI CCSGG 1 cut(s) 504
BsaHI GRCGYC 6 cut(s) 5, 558, 579, 612, 645, 723
BsaJI CCNNGG 3 cut(s) 502, 607, 701
BsaWI WCCGGW 2 cut(s) 746, 781
BsaXI ACNNNNNCTCC 2 cut(s) 728, 758
Bsc4I CCNNNNNNNGG 2 cut(s) 701, 719
Bse118I RCCGGY 2 cut(s) 89, 719
BseBI CCWGG 1 cut(s) 702
BseDI CCNNGG 3 cut(s) 502, 607, 701
BseGI GGATG 2 cut(s) 113, 137
BseLI CCNNNNNNNGG 2 cut(s) 701, 719
BseMII CTCAG 2 cut(s) 364, 452
BseRI GAGGAG 4 cut(s) 35, 62, 138, 488
BseXI GCAGC 5 cut(s) 248, 265, 405, 685, 694
BseYI CCCAGC 2 cut(s) 306, 570
BsgI GTGCAG 1 cut(s) 825
Bsh1236I CGCG 1 cut(s) 617
BshFI GGCC 1 cut(s) 93
BshNI GGYRCC 1 cut(s) 4
BsiSI CCGG 9 cut(s) 90, 233, 291, 371, 504, 720, 734, 747, 782
BslFI GGGAC 1 cut(s) 419
BslI CCNNNNNNNGG 2 cut(s) 701, 719
BsmAI GTCTC 1 cut(s) 393
BsmFI GGGAC 1 cut(s) 419
BsnI GGCC 1 cut(s) 93
Bsp143I GATC 2 cut(s) 282, 457
Bsp68I TCGCGA 1 cut(s) 617
BspANI GGCC 1 cut(s) 93
BspCNI CTCAG 2 cut(s) 363, 451
BspFNI CGCG 1 cut(s) 617
BspLI GGNNCC 4 cut(s) 6, 94, 289, 711
BspMI ACCTGC 1 cut(s) 697
BspT107I GGYRCC 1 cut(s) 4
BsrBI CCGCTC 1 cut(s) 337
BsrFI RCCGGY 2 cut(s) 89, 719
BssAI RCCGGY 2 cut(s) 89, 719
BssECI CCNNGG 3 cut(s) 502, 607, 701
BssMI GATC 2 cut(s) 282, 457
BssNI GRCGYC 6 cut(s) 5, 558, 579, 612, 645, 723
Bst2UI CCWGG 1 cut(s) 702
Bst4CI ACNGT 4 cut(s) 165, 361, 550, 655
Bst6I CTCTTC 2 cut(s) 41, 473
BstACI GRCGYC 6 cut(s) 5, 558, 579, 612, 645, 723
BstC8I GCNNGC 2 cut(s) 91, 721
BstDEI CTNAG 3 cut(s) 350, 438, 663
BstDSI CCRYGG 1 cut(s) 607
BstF5I GGATG 2 cut(s) 113, 137
BstFNI CGCG 1 cut(s) 617
BstH2I RGCGCY 3 cut(s) 8, 357, 445
BstHHI GCGC 4 cut(s) 7, 253, 356, 444
BstKTI GATC 2 cut(s) 285, 460
BstMAI GTCTC 1 cut(s) 393
BstMBI GATC 2 cut(s) 282, 457
BstMWI GCNNNNNNNGC 6 cut(s) 242, 673, 679, 682, 688, 691
BstNI CCWGG 1 cut(s) 702
BstSCI CCNGG 2 cut(s) 502, 700
BstUI CGCG 1 cut(s) 617
BstV1I GCAGC 5 cut(s) 248, 265, 405, 685, 694
BstV2I GAAGAC 1 cut(s) 355
BsuRI GGCC 1 cut(s) 93
BtgI CCRYGG 1 cut(s) 607
BtgZI GCGATG 1 cut(s) 174
BtrI CACGTC 1 cut(s) 430
BtsCI GGATG 2 cut(s) 113, 137
BtuMI TCGCGA 1 cut(s) 617
BveI ACCTGC 1 cut(s) 697
Cac8I GCNNGC 2 cut(s) 91, 721
CfoI GCGC 4 cut(s) 7, 253, 356, 444
Cfr10I RCCGGY 2 cut(s) 89, 719
Cfr13I GGNCC 1 cut(s) 92
CseI GACGC 5 cut(s) 284, 566, 601, 634, 712
CviAII CATG 2 cut(s) 367, 793
CviJI RGCY 6 cut(s) 93, 288, 306, 574, 667, 800
CviKI_1 RGCY 6 cut(s) 93, 288, 306, 574, 667, 800
DdeI CTNAG 3 cut(s) 350, 438, 663
DinI GGCGCC 1 cut(s) 6
DpnI GATC 2 cut(s) 284, 459
DpnII GATC 2 cut(s) 282, 457
DrdI GACNNNNNNGTC 1 cut(s) 584
DseDI GACNNNNNNGTC 1 cut(s) 584
Eam1104I CTCTTC 2 cut(s) 41, 473
EarI CTCTTC 2 cut(s) 41, 473
EciI GGCGGA 2 cut(s) 88, 452
EcoRII CCWGG 1 cut(s) 700
EgeI GGCGCC 1 cut(s) 6
EheI GGCGCC 1 cut(s) 6
FaeI CATG 2 cut(s) 370, 796
FaiI YATR 2 cut(s) 368, 794
FaqI GGGAC 1 cut(s) 419
FatI CATG 2 cut(s) 366, 792
FauI CCCGC 1 cut(s) 724
FblI GTMKAC 3 cut(s) 273, 582, 657
FokI GGATG 2 cut(s) 100, 124
GlaI GCGC 4 cut(s) 6, 252, 355, 443
GsaI CCCAGC 2 cut(s) 310, 574
HaeII RGCGCY 3 cut(s) 8, 357, 445
HaeIII GGCC 1 cut(s) 93
HapII CCGG 9 cut(s) 90, 233, 291, 371, 504, 720, 734, 747, 782
HgaI GACGC 5 cut(s) 284, 566, 601, 634, 712
HhaI GCGC 4 cut(s) 7, 253, 356, 444
Hin1I GRCGYC 6 cut(s) 5, 558, 579, 612, 645, 723
Hin1II CATG 2 cut(s) 370, 796
Hin6I GCGC 4 cut(s) 5, 251, 354, 442
HinP1I GCGC 4 cut(s) 5, 251, 354, 442
HincII GTYRAC 4 cut(s) 274, 313, 658, 727
HindII GTYRAC 4 cut(s) 274, 313, 658, 727
HinfI GANTC 7 cut(s) 331, 493, 536, 659, 697, 789, 823
HpaII CCGG 9 cut(s) 90, 233, 291, 371, 504, 720, 734, 747, 782
Hpy166II GTNNAC 7 cut(s) 274, 313, 583, 607, 640, 658, 727
Hpy188I TCNGA 2 cut(s) 282, 828
Hpy188III TCNNGA 5 cut(s) 301, 472, 490, 616, 626
Hpy8I GTNNAC 7 cut(s) 274, 313, 583, 607, 640, 658, 727
HpyAV CCTTC 6 cut(s) 39, 50, 90, 192, 216, 460
HpyCH4III ACNGT 4 cut(s) 165, 361, 550, 655
HpyCH4IV ACGT 5 cut(s) 429, 579, 585, 597, 621
HpyCH4V TGCA 1 cut(s) 806
HpyF10VI GCNNNNNNNGC 6 cut(s) 242, 673, 679, 682, 688, 691
HpyF3I CTNAG 3 cut(s) 350, 438, 663
HpySE526I ACGT 5 cut(s) 429, 579, 585, 597, 621
Hsp92I GRCGYC 6 cut(s) 5, 558, 579, 612, 645, 723
Hsp92II CATG 2 cut(s) 370, 796
HspAI GCGC 4 cut(s) 5, 251, 354, 442
KasI GGCGCC 1 cut(s) 4
KroI GCCGGC 2 cut(s) 89, 719
KroNI GCCGGC 2 cut(s) 91, 721
Kzo9I GATC 2 cut(s) 282, 457
LmnI GCTCC 2 cut(s) 293, 303
Lsp1109I GCAGC 5 cut(s) 248, 265, 405, 685, 694
MaeII ACGT 5 cut(s) 429, 579, 585, 597, 621
MaeIII GTNAC 2 cut(s) 520, 586
MalI GATC 2 cut(s) 284, 459
MbiI CCGCTC 1 cut(s) 337
MboI GATC 2 cut(s) 282, 457
MboII GAAGA 3 cut(s) 28, 355, 460
MluCI AATT 1 cut(s) 541
Mly113I GGCGCC 1 cut(s) 5
MlyI GAGTC 4 cut(s) 487, 545, 653, 706
MreI CGCCGGCG 1 cut(s) 719
MroNI GCCGGC 2 cut(s) 89, 719
MspI CCGG 9 cut(s) 90, 233, 291, 371, 504, 720, 734, 747, 782
MspR9I CCNGG 2 cut(s) 504, 702
MvaI CCWGG 1 cut(s) 702
MvnI CGCG 1 cut(s) 617
MwoI GCNNNNNNNGC 6 cut(s) 242, 673, 679, 682, 688, 691
NaeI GCCGGC 2 cut(s) 91, 721
NarI GGCGCC 1 cut(s) 5
NciI CCSGG 1 cut(s) 504
NdeII GATC 2 cut(s) 282, 457
NgoMIV GCCGGC 2 cut(s) 89, 719
NlaIII CATG 2 cut(s) 370, 796
NlaIV GGNNCC 4 cut(s) 6, 94, 289, 711
NmeAIII GCCGAG 1 cut(s) 720
NmuCI GTSAC 2 cut(s) 520, 586
NruI TCGCGA 1 cut(s) 617
PcsI WCGNNNNNNNCGW 3 cut(s) 291, 609, 654
PdiI GCCGGC 2 cut(s) 91, 721
PfeI GAWTC 3 cut(s) 331, 789, 823
PleI GAGTC 4 cut(s) 487, 544, 653, 705
PluTI GGCGCC 1 cut(s) 8
PpsI GAGTC 4 cut(s) 487, 544, 653, 705
Psp1406I AACGTT 1 cut(s) 621
Psp6I CCWGG 1 cut(s) 700
PspFI CCCAGC 2 cut(s) 306, 570
PspGI CCWGG 1 cut(s) 700
PspN4I GGNNCC 4 cut(s) 6, 94, 289, 711
PspPI GGNCC 1 cut(s) 92
RruI TCGCGA 1 cut(s) 617
SalI GTCGAC 2 cut(s) 272, 656
Sau3AI GATC 2 cut(s) 282, 457
Sau96I GGNCC 1 cut(s) 92
SchI GAGTC 4 cut(s) 487, 545, 653, 706
ScrFI CCNGG 2 cut(s) 504, 702
SfoI GGCGCC 1 cut(s) 6
SgrAI CRCCGGYG 1 cut(s) 719
SgrDI CGTCGACG 1 cut(s) 272
Sse9I AATT 1 cut(s) 541
SspDI GGCGCC 1 cut(s) 4
StyD4I CCNGG 2 cut(s) 502, 700
TaaI ACNGT 4 cut(s) 165, 361, 550, 655
TaiI ACGT 5 cut(s) 432, 582, 588, 600, 624
TaqI TCGA 2 cut(s) 273, 657
TasI AATT 1 cut(s) 541
TauI GCSGC 8 cut(s) 59, 62, 172, 196, 226, 329, 383, 694
TfiI GAWTC 3 cut(s) 331, 789, 823
TseFI GTSAC 2 cut(s) 520, 586
TseI GCWGC 5 cut(s) 236, 253, 418, 673, 682
Tsp45I GTSAC 2 cut(s) 520, 586
TspDTI ATGAA 4 cut(s) 275, 355, 502, 781
XmiI GTMKAC 3 cut(s) 273, 582, 657
ZraI GACGTC 1 cut(s) 580
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.