FvH4_5g21920

Four repeated domains in the Fasciclin I family of proteins, present in many other contexts.

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Reverse (-)
13292559 .. 13293071
513 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g21920.t1

Sequence Viewer

Length: 513 bp
ATGACGCAGCATATGAACAACATCGTCGACGCTCTGATCGGATCCAGCGACTTTAGGAGCTGGGTCAACATCATCATGGCGGCAAATCCGCTCTCCCTCCCACTCAGCACCACCGTCTTGATGCCGAAAAACGTCGCCGTTTCACGCCTTCCCGTCGTCGACCCGTTCTTGCTGCCTTACCACGTCGTCCCTCAGTTCCTCACCTTCGTCGATCTCCGCCTCTTCAAGAACAGCTCCTGCCTCCTGACTTTCCTCCCCGAGAAGTTCATCGTCATCACCAAAACACTGAGTCCAATTTCACCGTCGATGACGCCACTATCACCCAGCCCGACTCTCCTCCATTCTTCAACCTCCGGCTCCACCTCGATTGCGTCTCTGATACCGTTGACGAAGCCTACATCTTCGATCCCGACGCCGATGCCTGCATCTCCGATTTCGTCAACGATGACTTCATCTCTGAGAGTCTATCCAGGACTCGATCGTCGATCACCGCCGCACTCCCAATCACTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

171

Amino Acids

18.4

Weight (kDa)

9.89

Isoelectric Point (pI)

70.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 480
AccBSI CCGCTC 1 cut(s) 91
AccI GTMKAC 2 cut(s) 27, 159
AciI CCGC 5 cut(s) 80, 89, 217, 491, 494
AclWI GGATC 3 cut(s) 36, 49, 400
AcyI GRCGYC 2 cut(s) 311, 413
AgsI TTSAA 2 cut(s) 226, 348
AjiI CACGTC 1 cut(s) 184
AjnI CCWGG 1 cut(s) 469
AluBI AGCT 2 cut(s) 60, 234
AluI AGCT 2 cut(s) 60, 234
Alw26I GTCTC 1 cut(s) 378
AlwI GGATC 3 cut(s) 36, 49, 400
AlwNI CAGNNNCTG 1 cut(s) 237
Ama87I CYCGRG 1 cut(s) 257
ApeKI GCWGC 2 cut(s) 7, 172
AsuHPI GGTGA 5 cut(s) 193, 268, 291, 312, 480
AvaI CYCGRG 1 cut(s) 257
BamHI GGATCC 1 cut(s) 41
BbvI GCAGC 2 cut(s) 19, 159
BceAI ACGGC 1 cut(s) 122
BcgI CGANNNNNNTGC 2 cut(s) 400, 434
BciT130I CCWGG 1 cut(s) 471
BcoDI GTCTC 1 cut(s) 378
BisI GCNGC 4 cut(s) 8, 81, 173, 494
BlsI GCNGC 4 cut(s) 9, 82, 174, 495
Bme1390I CCNGG 1 cut(s) 471
BmeT110I CYCGRG 1 cut(s) 257
BmgBI CACGTC 1 cut(s) 184
BmiI GGNNCC 2 cut(s) 43, 358
BmrFI CCNGG 1 cut(s) 471
BmsI GCATC 3 cut(s) 111, 408, 434
BsaHI GRCGYC 2 cut(s) 311, 413
BseBI CCWGG 1 cut(s) 471
BseMII CTCAG 4 cut(s) 118, 206, 278, 449
BseRI GAGGAG 1 cut(s) 326
BseXI GCAGC 2 cut(s) 19, 159
BseYI CCCAGC 2 cut(s) 60, 323
Bsh1285I CGRYCG 1 cut(s) 481
BsiEI CGRYCG 1 cut(s) 481
BsiHKCI CYCGRG 1 cut(s) 257
BsiSI CCGG 1 cut(s) 354
BslFI GGGAC 1 cut(s) 173
BsmAI GTCTC 1 cut(s) 378
BsmBI CGTCTC 1 cut(s) 378
BsmFI GGGAC 1 cut(s) 173
BsoBI CYCGRG 1 cut(s) 257
Bsp143I GATC 6 cut(s) 36, 41, 211, 405, 478, 485
BspACI CCGC 5 cut(s) 80, 89, 217, 491, 494
BspCNI CTCAG 4 cut(s) 117, 205, 279, 450
BspLI GGNNCC 2 cut(s) 43, 358
BspPI GGATC 3 cut(s) 36, 49, 400
BsrBI CCGCTC 1 cut(s) 91
BssMI GATC 6 cut(s) 36, 41, 211, 405, 478, 485
BssNI GRCGYC 2 cut(s) 311, 413
Bst2UI CCWGG 1 cut(s) 471
Bst4CI ACNGT 3 cut(s) 115, 303, 384
Bst6I CTCTTC 1 cut(s) 227
BstACI GRCGYC 2 cut(s) 311, 413
BstC8I GCNNGC 1 cut(s) 423
BstDEI CTNAG 4 cut(s) 104, 192, 287, 458
BstKTI GATC 6 cut(s) 39, 44, 214, 408, 481, 488
BstMAI GTCTC 1 cut(s) 378
BstMBI GATC 6 cut(s) 36, 41, 211, 405, 478, 485
BstMCI CGRYCG 1 cut(s) 481
BstNI CCWGG 1 cut(s) 471
BstSCI CCNGG 1 cut(s) 469
BstV1I GCAGC 2 cut(s) 19, 159
BstX2I RGATCY 1 cut(s) 41
BstYI RGATCY 1 cut(s) 41
BtrI CACGTC 1 cut(s) 184
BtsIMutI CAGTG 1 cut(s) 284
Cac8I GCNNGC 1 cut(s) 423
CaiI CAGNNNCTG 1 cut(s) 237
CseI GACGC 5 cut(s) 13, 38, 319, 360, 421
CspCI CAANNNNNGTGG 2 cut(s) 349, 384
CviAII CATG 1 cut(s) 76
CviJI RGCY 5 cut(s) 60, 234, 327, 357, 394
CviKI_1 RGCY 5 cut(s) 60, 234, 327, 357, 394
DdeI CTNAG 4 cut(s) 104, 192, 287, 458
DpnI GATC 6 cut(s) 38, 43, 213, 407, 480, 487
DpnII GATC 6 cut(s) 36, 41, 211, 405, 478, 485
DrdI GACNNNNNNGTC 1 cut(s) 480
DseDI GACNNNNNNGTC 1 cut(s) 480
Eam1104I CTCTTC 1 cut(s) 227
EarI CTCTTC 1 cut(s) 227
EciI GGCGGA 1 cut(s) 206
Eco88I CYCGRG 1 cut(s) 257
EcoRII CCWGG 1 cut(s) 469
Esp3I CGTCTC 1 cut(s) 378
FaeI CATG 1 cut(s) 79
FaiI YATR 3 cut(s) 12, 14, 77
FaqI GGGAC 1 cut(s) 173
FatI CATG 1 cut(s) 75
FauNDI CATATG 1 cut(s) 12
FblI GTMKAC 2 cut(s) 27, 159
Fnu4HI GCNGC 4 cut(s) 8, 81, 173, 494
Fsp4HI GCNGC 4 cut(s) 8, 81, 173, 494
GluI GCNGC 4 cut(s) 8, 81, 173, 494
GsaI CCCAGC 2 cut(s) 64, 327
HapII CCGG 1 cut(s) 354
HgaI GACGC 5 cut(s) 13, 38, 319, 360, 421
Hin1I GRCGYC 2 cut(s) 311, 413
Hin1II CATG 1 cut(s) 79
HincII GTYRAC 5 cut(s) 28, 67, 160, 387, 441
HindII GTYRAC 5 cut(s) 28, 67, 160, 387, 441
HinfI GANTC 4 cut(s) 289, 331, 462, 474
HpaII CCGG 1 cut(s) 354
HphI GGTGA 5 cut(s) 193, 268, 291, 312, 480
Hpy166II GTNNAC 5 cut(s) 28, 67, 160, 387, 441
Hpy188I TCNGA 6 cut(s) 36, 41, 378, 432, 459, 512
Hpy188III TCNNGA 4 cut(s) 118, 226, 244, 409
Hpy8I GTNNAC 5 cut(s) 28, 67, 160, 387, 441
HpyAV CCTTC 2 cut(s) 158, 214
HpyCH4III ACNGT 3 cut(s) 115, 303, 384
HpyCH4IV ACGT 2 cut(s) 132, 183
HpyCH4V TGCA 1 cut(s) 425
HpyF3I CTNAG 4 cut(s) 104, 192, 287, 458
HpySE526I ACGT 2 cut(s) 132, 183
Hsp92I GRCGYC 2 cut(s) 311, 413
Hsp92II CATG 1 cut(s) 79
Kzo9I GATC 6 cut(s) 36, 41, 211, 405, 478, 485
LmnI GCTCC 3 cut(s) 57, 239, 362
LpnPI CCDG 9 cut(s) 46, 58, 250, 257, 337, 367, 435, 456, 483
Lsp1109I GCAGC 2 cut(s) 19, 159
LweI GCATC 3 cut(s) 111, 408, 434
MaeII ACGT 2 cut(s) 132, 183
MalI GATC 6 cut(s) 38, 43, 213, 407, 480, 487
MbiI CCGCTC 1 cut(s) 91
MboI GATC 6 cut(s) 36, 41, 211, 405, 478, 485
MboII GAAGA 3 cut(s) 214, 336, 393
MflI RGATCY 1 cut(s) 41
MluCI AATT 1 cut(s) 294
MlyI GAGTC 4 cut(s) 298, 325, 468, 471
MnlI CCTC 9 cut(s) 107, 201, 209, 230, 251, 263, 347, 361, 373
MslI CAYNNNNRTG 1 cut(s) 74
MspI CCGG 1 cut(s) 354
MspR9I CCNGG 1 cut(s) 471
MvaI CCWGG 1 cut(s) 471
NdeI CATATG 1 cut(s) 12
NdeII GATC 6 cut(s) 36, 41, 211, 405, 478, 485
NlaIII CATG 1 cut(s) 79
NlaIV GGNNCC 2 cut(s) 43, 358
PcsI WCGNNNNNNNCGW 1 cut(s) 45
PfoI TCCNGGA 1 cut(s) 469
PkrI GCNGC 4 cut(s) 9, 82, 174, 495
Ple19I CGATCG 1 cut(s) 481
PleI GAGTC 4 cut(s) 297, 325, 468, 470
PpsI GAGTC 4 cut(s) 297, 325, 468, 470
Psp6I CCWGG 1 cut(s) 469
PspFI CCCAGC 2 cut(s) 60, 323
PspGI CCWGG 1 cut(s) 469
PspN4I GGNNCC 2 cut(s) 43, 358
PstNI CAGNNNCTG 1 cut(s) 237
PsuI RGATCY 1 cut(s) 41
PvuI CGATCG 1 cut(s) 481
RseI CAYNNNNRTG 1 cut(s) 74
SalI GTCGAC 2 cut(s) 26, 158
SatI GCNGC 4 cut(s) 8, 81, 173, 494
Sau3AI GATC 6 cut(s) 36, 41, 211, 405, 478, 485
SchI GAGTC 4 cut(s) 298, 325, 468, 471
ScrFI CCNGG 1 cut(s) 471
SetI ASST 7 cut(s) 62, 135, 186, 206, 236, 353, 365
SfaNI GCATC 3 cut(s) 111, 408, 434
SgrDI CGTCGACG 1 cut(s) 26
SmiMI CAYNNNNRTG 1 cut(s) 74
Sse9I AATT 1 cut(s) 294
SsiI CCGC 5 cut(s) 80, 89, 217, 491, 494
StyD4I CCNGG 1 cut(s) 469
TaaI ACNGT 3 cut(s) 115, 303, 384
TaiI ACGT 2 cut(s) 135, 186
TaqI TCGA 8 cut(s) 27, 159, 210, 305, 365, 404, 477, 484
TasI AATT 1 cut(s) 294
TauI GCSGC 2 cut(s) 83, 496
TscAI CASTG 1 cut(s) 291
TseI GCWGC 2 cut(s) 7, 172
TspDTI ATGAA 3 cut(s) 29, 256, 441
TspRI CASTG 1 cut(s) 291
XmiI GTMKAC 2 cut(s) 27, 159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.