Rorug04G0432100

Four repeated domains in the Fasciclin I family of proteins, present in many other contexts.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0005034
Physical Location & Seq
Reverse (-)
59055175 .. 59057202
2028 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0432100.1

Sequence Viewer

Length: 2028 bp
ATGATCTTTGGATTAACCTCGGGTCGTCGGATCCTAACCTACCCGGCGGTTCATCCCTGCGAAGCCATAGCTCCGGAGACGCTTCTGATCTCACTCATCGCTCTCACCCACAACATTTGCTCTTACAAATCCAAACTCATCGCCAGCAACAAGCGAAACGCTTTGGAAGCAATCCGCCAAATCGGAGTGATTCGGGTTTTTTTGGAAGAAGAGATCCAGGCCGGGCTGCCGGGTCTTCCGGATTCGACCGTTTTGAGCTTCTCGGAGCTCCATTTGGCTTTCCAGAAGGTTCAGTACTTGCTGGAAGACTGTACCCGGGACGACGCCCGGCTATGGATGCTGATGAATTCGGAGCGGGTTGCGAACCAGTTCCGGATCTTGATTCGGGCCATGGCGACGGCTCTCGATGTTCTGCCTCTTGATGGCATCCACGTGGCAGTTGAGGTGAAGGAGCAGGTCGAATTGGTGATGAGGCAAGCGCGGCGGGTGAGGTTCGAAGTTGACCCGGAAGATAAACGGGTCGTCGAGGCGGTTAAGAAAGTTTTGATCGGGTTCGAGAAACGGGTCGACCCGGATAGGAGTGAGCTGAAGCGGGTACTTGATCATGTTGGGATTCGAAGATGGAGTAGGTGCGAGAAGGAGGTGAGATTTTTGGAATCTGAAATTGGGTTTGAGAATCTGAGAGAGGTGGGGTTGCTGAGCGGCCTGAAGGGGTTGTTGTGCTACTGCCGGTGCGTCATGTTGGGGACTGTGGACGGGTTACCCGGCCCGCGACCCGAACCCAGTAGCCGCAGCGAGCTGGTGAGTTGCCTGAATTTGGAAGATTTCCGGTGTCCGATATCGCTGGAGATAATGACGGATCCGGTGACGATCGGGACGGGTCACAGCTACGACCGGAGCTCCATTATGAAGTGGTTCAGAGCTGGAAAGCCGATTTGTCCGAAAACAGGGGAGAAAATGAAGAGCATGGAGGTGGTGCCTAATTTGGCACTGAAGAGGTTGATTCAGCAGTACTGCAATGAGAATGGGATTCCGTTTGGCGATTCGGGTCGTCGGAATCGCGACATTGGGAGGAGTACAGTTGCAGGCAGCTTGGCGGCTGAGGGAGCAATGAAAATGGTGGCGGAGTTTCTCTGTGGAGGTGTTGGGACTGGATCGAATAAGGCTGCTTATGAGATTCGGCTTCTTTCGAAAACAAGCATTTTTAACAGGTCTTGTTTGGTGGAAGCTGGAGTGGTGCCGCATTTGTTGAAGCTGTTGGCTTCTGCAGATTCGGAGACTCAAGAGAATGCAGTTGCAGGGTTGTTGAATCTGTCCAAGCATTCGAAAGGGAAAGCTGTGATTGTTGAAAATGGCGGTGTGCATTTGGTTGTGGATGTTCTGAAGGAGGGTCTCAAAGTTGAGGCTTGCCAGCATGCTGCTGGTACATTGTTTTATCTTGCTTCGATTGAGGAGTACCGGATATTGATCGGAGAAAACCCGAGGGCCATACCGGCTTTGAGGGAGCTGATCAAGAACGGTTCTGATCGAGGCAAGAAGAATGCATTGGTTGCTATATTCGGCCTGCTTACACACCCTGCAAATCATAGAAGGGTGTTAGCAGCTGGGGTGGTTCCTTTGCTGTTTGAGATACTGACGTCTTTTGACAGTGAAGTTCTTGTGACAGATTCTCTAGCGATTCTCGCAACTCTGGCTGAGAAACCCGAGGGAGCAGTTGCAATTTCGCGTTGCAAGGCTTTGGATTCGATTGTGGGGATTCTGAATTCTTCGACTTCAAGGGTGGCCAAGGAGTTCTGTGTGTCTTTGTTGCTGGCTCTTTGTGCAAATGGTGGCCACAATGTGGTTGCTCTTTTGGTTAAGAGCCCTTCTCTTATGGGATGTTTGTATTCCCAACTTAGTGAAGGCACATCTAGAGCAAGCAAAAGGGCCAGTGCTCTCATCAAGGTCCTCCATGAATTCCATGAAACAAGATCGTCTGGTCCAGTCACTCGGGTTCTTCCACAGGAGCGATTTGTTCACGTTAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

675

Amino Acids

74.03

Weight (kDa)

8.82

Isoelectric Point (pI)

43.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PUB10_N PF25368 81 - 162 5.2e-13 PUB10-like, N-terminal domain
U-box PF04564 274 - 342 5.4e-17 U-box domain
ARM_ARMC5 PF24768 362 - 553 1.4e-09 ARMC5
ARM_PUB PF25598 388 - 650 5.3e-14 Plant U-box protein ARM repeat region
Arm PF00514 403 - 439 2.7e-09 Armadillo/beta-catenin-like repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1640
Acc36I ACCTGC 1 cut(s) 445
AccB1I GGYRCC 2 cut(s) 976, 1237
AccB7I CCANNNNNTGG 1 cut(s) 1840
AccBSI CCGCTC 2 cut(s) 355, 702
AccI GTMKAC 1 cut(s) 567
AccII CGCG 4 cut(s) 481, 772, 1062, 1726
AccIII TCCGGA 3 cut(s) 73, 238, 372
AclWI GGATC 7 cut(s) 25, 38, 208, 383, 854, 867, 1162
AcoI YGGCCR 2 cut(s) 1782, 1831
AcsI RAATTY 4 cut(s) 346, 814, 1762, 1955
AcuI CTGAAG 4 cut(s) 608, 728, 1013, 1403
AcvI CACGTG 1 cut(s) 433
AcyI GRCGYC 2 cut(s) 324, 1637
AdeI CACNNNGTG 1 cut(s) 1840
AfaI GTAC 7 cut(s) 296, 313, 597, 1013, 1078, 1426, 1457
AfiI CCNNNNNNNGG 5 cut(s) 333, 422, 817, 947, 1840
AgsI TTSAA 4 cut(s) 1252, 1309, 1349, 1776
AjnI CCWGG 1 cut(s) 216
AjuI GAANNNNNNNTTGG 4 cut(s) 648, 680, 1529, 1561
Alw21I GWGCWC 3 cut(s) 270, 902, 1936
Alw26I GTCTC 3 cut(s) 71, 1271, 1397
AlwI GGATC 7 cut(s) 25, 38, 208, 383, 854, 867, 1162
Ama87I CYCGRG 5 cut(s) 19, 315, 1480, 1703, 1989
Aor13HI TCCGGA 3 cut(s) 73, 238, 372
AoxI GGCC 9 cut(s) 219, 387, 703, 766, 1485, 1561, 1782, 1831, 1926
ApeKI GCWGC 6 cut(s) 226, 792, 1089, 1166, 1418, 1601
ApoI RAATTY 4 cut(s) 346, 814, 1762, 1955
Asp700I GAANNNNTTC 2 cut(s) 368, 914
AspLEI GCGC 1 cut(s) 481
AspS9I GGNCC 6 cut(s) 387, 767, 1485, 1926, 1945, 1979
AsuC2I CCSGG 9 cut(s) 44, 223, 231, 316, 317, 328, 506, 572, 765
AsuHPI GGTGA 7 cut(s) 97, 457, 478, 499, 655, 814, 877
AsuII TTCGAA 4 cut(s) 495, 616, 1190, 1325
AvaI CYCGRG 5 cut(s) 19, 315, 1480, 1703, 1989
AvaII GGWCC 2 cut(s) 1945, 1979
BaeI ACNNNNGTAYC 2 cut(s) 1622, 1655
BalI TGGCCA 2 cut(s) 1784, 1833
BamHI GGATCC 2 cut(s) 30, 859
BanI GGYRCC 2 cut(s) 976, 1237
BanII GRGCYC 3 cut(s) 270, 902, 1865
BarI GAAGNNNNNNTAC 2 cut(s) 278, 310
BbrPI CACGTG 1 cut(s) 433
BbsI GAAGAC 2 cut(s) 227, 312
Bbv12I GWGCWC 3 cut(s) 270, 902, 1936
BbvCI CCTCAGC 1 cut(s) 1101
BbvI GCAGC 6 cut(s) 213, 804, 1101, 1153, 1405, 1613
BccI CCATC 2 cut(s) 416, 615
BceAI ACGGC 1 cut(s) 414
BciT130I CCWGG 1 cut(s) 218
BclI TGATCA 2 cut(s) 601, 1509
BcnI CCSGG 9 cut(s) 44, 223, 231, 316, 317, 328, 506, 572, 765
BcoDI GTCTC 3 cut(s) 71, 1271, 1397
BfaI CTAG 2 cut(s) 1673, 1911
BfmI CTRYAG 1 cut(s) 1266
BfuAI ACCTGC 1 cut(s) 445
BglI GCCNNNNNGGC 1 cut(s) 1493
BlpI GCTNAGC 1 cut(s) 698
BmcAI AGTACT 2 cut(s) 296, 1013
Bme18I GGWCC 2 cut(s) 1945, 1979
BmeT110I CYCGRG 5 cut(s) 19, 315, 1480, 1703, 1989
BmgT120I GGNCC 6 cut(s) 387, 767, 1485, 1926, 1945, 1979
BmiI GGNNCC 5 cut(s) 32, 861, 978, 1239, 1614
BmrI ACTGGG 1 cut(s) 777
BmsI GCATC 2 cut(s) 327, 435
BmuI ACTGGG 1 cut(s) 777
BpiI GAAGAC 2 cut(s) 227, 312
BplI GAGNNNNNCTC 2 cut(s) 1852, 1884
BpmI CTGGAG 2 cut(s) 866, 1251
Bpu10I CCTNAGC 1 cut(s) 1101
Bpu1102I GCTNAGC 1 cut(s) 698
Bpu14I TTCGAA 4 cut(s) 495, 616, 1190, 1325
BpuEI CTTGAG 1 cut(s) 1266
BpuMI CCSGG 9 cut(s) 44, 223, 231, 316, 317, 328, 506, 572, 765
BsaAI YACGTR 1 cut(s) 433
BsaBI GATNNNNATC 1 cut(s) 1466
BsaHI GRCGYC 2 cut(s) 324, 1637
BsaI GGTCTC 1 cut(s) 1397
BsaJI CCNNGG 6 cut(s) 18, 315, 390, 1481, 1704, 1785
BsaWI WCCGGW 7 cut(s) 73, 238, 372, 828, 862, 894, 1458
BsaXI ACNNNNNCTCC 2 cut(s) 884, 914
Bsc4I CCNNNNNNNGG 5 cut(s) 333, 422, 817, 947, 1840
Bse118I RCCGGY 2 cut(s) 729, 1492
Bse1I ACTGG 5 cut(s) 367, 783, 1156, 1929, 1982
Bse3DI GCAATG 2 cut(s) 1024, 1116
Bse8I GATNNNNATC 1 cut(s) 1466
BseAI TCCGGA 3 cut(s) 73, 238, 372
BseBI CCWGG 1 cut(s) 218
BseDI CCNNGG 6 cut(s) 18, 315, 390, 1481, 1704, 1785
BseGI GGATG 5 cut(s) 52, 342, 426, 1381, 1883
BseJI GATNNNNATC 1 cut(s) 1466
BseLI CCNNNNNNNGG 5 cut(s) 333, 422, 817, 947, 1840
BseMI GCAATG 2 cut(s) 1024, 1116
BseMII CTCAG 4 cut(s) 671, 689, 1092, 1686
BseNI ACTGG 5 cut(s) 367, 783, 1156, 1929, 1982
BseRI GAGGAG 2 cut(s) 1087, 1466
BseXI GCAGC 6 cut(s) 213, 804, 1101, 1153, 1405, 1613
BseYI CCCAGC 1 cut(s) 1604
Bsh1236I CGCG 4 cut(s) 481, 772, 1062, 1726
Bsh1285I CGRYCG 3 cut(s) 249, 873, 895
BshFI GGCC 9 cut(s) 221, 389, 705, 768, 1487, 1563, 1784, 1833, 1928
BshNI GGYRCC 2 cut(s) 976, 1237
BsiEI CGRYCG 3 cut(s) 249, 873, 895
BsiHKAI GWGCWC 3 cut(s) 270, 902, 1936
BsiHKCI CYCGRG 5 cut(s) 19, 315, 1480, 1703, 1989
BslFI GGGAC 4 cut(s) 332, 760, 889, 1162
BslI CCNNNNNNNGG 5 cut(s) 333, 422, 817, 947, 1840
BsmAI GTCTC 3 cut(s) 71, 1271, 1397
BsmBI CGTCTC 1 cut(s) 71
BsmFI GGGAC 4 cut(s) 332, 760, 889, 1162
BsmI GAATGC 3 cut(s) 1294, 1321, 1546
BsnI GGCC 9 cut(s) 221, 389, 705, 768, 1487, 1563, 1784, 1833, 1928
Bso31I GGTCTC 1 cut(s) 1397
BsoBI CYCGRG 5 cut(s) 19, 315, 1480, 1703, 1989
Bsp119I TTCGAA 4 cut(s) 495, 616, 1190, 1325
Bsp1286I GDGCHC 4 cut(s) 270, 902, 1865, 1936
Bsp13I TCCGGA 3 cut(s) 73, 238, 372
Bsp1720I GCTNAGC 1 cut(s) 698
Bsp19I CCATGG 1 cut(s) 390
Bsp68I TCGCGA 1 cut(s) 1062
BspANI GGCC 9 cut(s) 221, 389, 705, 768, 1487, 1563, 1784, 1833, 1928
BspCNI CTCAG 4 cut(s) 672, 690, 1093, 1687
BspEI TCCGGA 3 cut(s) 73, 238, 372
BspFNI CGCG 4 cut(s) 481, 772, 1062, 1726
BspLI GGNNCC 5 cut(s) 32, 861, 978, 1239, 1614
BspMAI CTGCAG 1 cut(s) 1270
BspMI ACCTGC 1 cut(s) 445
BspPI GGATC 7 cut(s) 25, 38, 208, 383, 854, 867, 1162
BspQI GCTCTTC 1 cut(s) 956
BspT104I TTCGAA 4 cut(s) 495, 616, 1190, 1325
BspT107I GGYRCC 2 cut(s) 976, 1237
BspTNI GGTCTC 1 cut(s) 1397
BsrBI CCGCTC 2 cut(s) 355, 702
BsrDI GCAATG 2 cut(s) 1024, 1116
BsrFI RCCGGY 2 cut(s) 729, 1492
BsrI ACTGG 5 cut(s) 367, 783, 1156, 1929, 1982
BssAI RCCGGY 2 cut(s) 729, 1492
BssECI CCNNGG 6 cut(s) 18, 315, 390, 1481, 1704, 1785
BssNI GRCGYC 2 cut(s) 324, 1637
BssT1I CCWWGG 2 cut(s) 390, 1785
Bst2UI CCWGG 1 cut(s) 218
Bst4CI ACNGT 6 cut(s) 250, 311, 751, 1081, 1520, 1649
Bst6I CTCTTC 3 cut(s) 204, 956, 989
BstACI GRCGYC 2 cut(s) 324, 1637
BstAPI GCANNNNNTGC 1 cut(s) 1550
BstBAI YACGTR 1 cut(s) 433
BstBI TTCGAA 4 cut(s) 495, 616, 1190, 1325
BstDEI CTNAG 5 cut(s) 680, 698, 1101, 1695, 1895
BstDSI CCRYGG 1 cut(s) 390
BstEII GGTNACC 1 cut(s) 759
BstF5I GGATG 5 cut(s) 52, 342, 426, 1381, 1883
BstFNI CGCG 4 cut(s) 481, 772, 1062, 1726
BstHHI GCGC 1 cut(s) 481
BstMAI GTCTC 3 cut(s) 71, 1271, 1397
BstMCI CGRYCG 3 cut(s) 249, 873, 895
BstMWI GCNNNNNNNGC 9 cut(s) 167, 337, 481, 1106, 1493, 1550, 1682, 1691, 1820
BstNI CCWGG 1 cut(s) 218
BstNSI RCATGY 1 cut(s) 1418
BstPI GGTNACC 1 cut(s) 759
BstSFI CTRYAG 1 cut(s) 1266
BstUI CGCG 4 cut(s) 481, 772, 1062, 1726
BstV1I GCAGC 6 cut(s) 213, 804, 1101, 1153, 1405, 1613
BstV2I GAAGAC 2 cut(s) 227, 312
BstX2I RGATCY 4 cut(s) 30, 213, 375, 859
BstYI RGATCY 4 cut(s) 30, 213, 375, 859
BsuRI GGCC 9 cut(s) 221, 389, 705, 768, 1487, 1563, 1784, 1833, 1928
BtgI CCRYGG 1 cut(s) 390
BtgZI GCGATG 2 cut(s) 82, 124
BtsCI GGATG 5 cut(s) 52, 342, 426, 1381, 1883
BtsIMutI CAGTG 3 cut(s) 989, 1654, 1936
BtuMI TCGCGA 1 cut(s) 1062
BveI ACCTGC 1 cut(s) 445
CfoI GCGC 1 cut(s) 481
Cfr10I RCCGGY 2 cut(s) 729, 1492
Cfr13I GGNCC 6 cut(s) 387, 767, 1485, 1926, 1945, 1979
Cfr9I CCCGGG 1 cut(s) 315
CseI GACGC 3 cut(s) 88, 332, 724
Csp6I GTAC 7 cut(s) 295, 312, 596, 1012, 1077, 1425, 1456
CspCI CAANNNNNGTGG 2 cut(s) 98, 133
CviAII CATG 7 cut(s) 391, 605, 739, 967, 1415, 1952, 1961
CviQI GTAC 7 cut(s) 295, 312, 596, 1012, 1077, 1425, 1456
DdeI CTNAG 5 cut(s) 680, 698, 1101, 1695, 1895
DraIII CACNNNGTG 1 cut(s) 1840
EaeI YGGCCR 2 cut(s) 1782, 1831
Eam1104I CTCTTC 3 cut(s) 204, 956, 989
EarI CTCTTC 3 cut(s) 204, 956, 989
EciI GGCGGA 2 cut(s) 164, 1139
Ecl136II GAGCTC 2 cut(s) 268, 900
Eco130I CCWWGG 2 cut(s) 390, 1785
Eco24I GRGCYC 3 cut(s) 270, 902, 1865
Eco31I GGTCTC 1 cut(s) 1397
Eco32I GATATC 1 cut(s) 840
Eco47I GGWCC 2 cut(s) 1945, 1979
Eco53kI GAGCTC 2 cut(s) 268, 900
Eco57I CTGAAG 4 cut(s) 608, 728, 1013, 1403
Eco72I CACGTG 1 cut(s) 433
Eco88I CYCGRG 5 cut(s) 19, 315, 1480, 1703, 1989
Eco91I GGTNACC 1 cut(s) 759
EcoICRI GAGCTC 2 cut(s) 268, 900
EcoO109I RGGNCCY 1 cut(s) 1945
EcoO65I GGTNACC 1 cut(s) 759
EcoRI GAATTC 3 cut(s) 346, 1762, 1955
EcoRII CCWGG 1 cut(s) 216
EcoRV GATATC 1 cut(s) 840
EcoT14I CCWWGG 2 cut(s) 390, 1785
EcoT22I ATGCAT 1 cut(s) 1546
EcoT38I GRGCYC 3 cut(s) 270, 902, 1865
ErhI CCWWGG 2 cut(s) 390, 1785
Esp3I CGTCTC 1 cut(s) 71
FaeI CATG 7 cut(s) 394, 608, 742, 970, 1418, 1955, 1964
FaqI GGGAC 4 cut(s) 332, 760, 889, 1162
FatI CATG 7 cut(s) 390, 604, 738, 966, 1414, 1951, 1960
FauI CCCGC 4 cut(s) 348, 477, 585, 777
FbaI TGATCA 2 cut(s) 601, 1509
FblI GTMKAC 1 cut(s) 567
FokI GGATG 5 cut(s) 39, 349, 413, 1388, 1890
FriOI GRGCYC 3 cut(s) 270, 902, 1865
FspBI CTAG 2 cut(s) 1673, 1911
GlaI GCGC 1 cut(s) 480
GsaI CCCAGC 1 cut(s) 1608
GsuI CTGGAG 2 cut(s) 866, 1251
HaeIII GGCC 9 cut(s) 221, 389, 705, 768, 1487, 1563, 1784, 1833, 1928
HgaI GACGC 3 cut(s) 88, 332, 724
HhaI GCGC 1 cut(s) 481
Hin1I GRCGYC 2 cut(s) 324, 1637
Hin1II CATG 7 cut(s) 394, 608, 742, 970, 1418, 1955, 1964
Hin6I GCGC 1 cut(s) 479
HinP1I GCGC 1 cut(s) 479
HincII GTYRAC 2 cut(s) 502, 568
HindII GTYRAC 2 cut(s) 502, 568
HphI GGTGA 7 cut(s) 97, 457, 478, 499, 655, 814, 877
Hpy166II GTNNAC 4 cut(s) 502, 568, 754, 2017
Hpy8I GTNNAC 4 cut(s) 502, 568, 754, 2017
Hpy99I CGWCG 5 cut(s) 30, 326, 400, 527, 1056
HpyAV CCTTC 8 cut(s) 280, 442, 631, 703, 1378, 1584, 1875, 1895
HpyCH4III ACNGT 6 cut(s) 250, 311, 751, 1081, 1520, 1649
HpyCH4IV ACGT 3 cut(s) 432, 1637, 2019
HpyF10VI GCNNNNNNNGC 9 cut(s) 167, 337, 481, 1106, 1493, 1550, 1682, 1691, 1820
HpyF3I CTNAG 5 cut(s) 680, 698, 1101, 1695, 1895
HpySE526I ACGT 3 cut(s) 432, 1637, 2019
Hsp92I GRCGYC 2 cut(s) 324, 1637
Hsp92II CATG 7 cut(s) 394, 608, 742, 970, 1418, 1955, 1964
HspAI GCGC 1 cut(s) 479
Kpn2I TCCGGA 3 cut(s) 73, 238, 372
Ksp22I TGATCA 2 cut(s) 601, 1509
LguI GCTCTTC 1 cut(s) 956
Lsp1109I GCAGC 6 cut(s) 213, 804, 1101, 1153, 1405, 1613
LweI GCATC 2 cut(s) 327, 435
MaeI CTAG 2 cut(s) 1673, 1911
MaeII ACGT 3 cut(s) 432, 1637, 2019
MaeIII GTNAC 5 cut(s) 759, 865, 881, 1660, 1984
MbiI CCGCTC 2 cut(s) 355, 702
MflI RGATCY 4 cut(s) 30, 213, 375, 859
MhlI GDGCHC 4 cut(s) 270, 902, 1865, 1936
MlsI TGGCCA 2 cut(s) 1784, 1833
MluCI AATT 8 cut(s) 346, 461, 663, 814, 982, 1719, 1762, 1955
MluNI TGGCCA 2 cut(s) 1784, 1833
MlyI GAGTC 1 cut(s) 1273
MmeI TCCRAC 2 cut(s) 8, 1034
Mox20I TGGCCA 2 cut(s) 1784, 1833
Mph1103I ATGCAT 1 cut(s) 1546
MroI TCCGGA 3 cut(s) 73, 238, 372
MroXI GAANNNNTTC 2 cut(s) 368, 914
MscI TGGCCA 2 cut(s) 1784, 1833
MseI TTAA 4 cut(s) 14, 534, 1206, 1857
MslI CAYNNNNRTG 2 cut(s) 431, 971
Msp20I TGGCCA 2 cut(s) 1784, 1833
MspA1I CMGCKG 1 cut(s) 1604
Mva1269I GAATGC 3 cut(s) 1294, 1321, 1546
MvaI CCWGG 1 cut(s) 218
MvnI CGCG 4 cut(s) 481, 772, 1062, 1726
MwoI GCNNNNNNNGC 9 cut(s) 167, 337, 481, 1106, 1493, 1550, 1682, 1691, 1820
NciI CCSGG 9 cut(s) 44, 223, 231, 316, 317, 328, 506, 572, 765
NcoI CCATGG 1 cut(s) 390
NlaIII CATG 7 cut(s) 394, 608, 742, 970, 1418, 1955, 1964
NlaIV GGNNCC 5 cut(s) 32, 861, 978, 1239, 1614
NmuCI GTSAC 4 cut(s) 865, 881, 1660, 1984
NruI TCGCGA 1 cut(s) 1062
NsiI ATGCAT 1 cut(s) 1546
NspI RCATGY 1 cut(s) 1418
NspV TTCGAA 4 cut(s) 495, 616, 1190, 1325
PaeI GCATGC 1 cut(s) 1418
PciSI GCTCTTC 1 cut(s) 956
PctI GAATGC 3 cut(s) 1294, 1321, 1546
PdmI GAANNNNTTC 2 cut(s) 368, 914
PflMI CCANNNNNTGG 1 cut(s) 1840
Ple19I CGATCG 1 cut(s) 873
PleI GAGTC 1 cut(s) 1273
PmaCI CACGTG 1 cut(s) 433
PmlI CACGTG 1 cut(s) 433
PpsI GAGTC 1 cut(s) 1273
Ppu21I YACGTR 1 cut(s) 433
PpuMI RGGWCCY 1 cut(s) 1945
Psp124BI GAGCTC 2 cut(s) 270, 902
Psp5II RGGWCCY 1 cut(s) 1945
Psp6I CCWGG 1 cut(s) 216
PspCI CACGTG 1 cut(s) 433
PspEI GGTNACC 1 cut(s) 759
PspFI CCCAGC 1 cut(s) 1604
PspGI CCWGG 1 cut(s) 216
PspN4I GGNNCC 5 cut(s) 32, 861, 978, 1239, 1614
PspPI GGNCC 6 cut(s) 387, 767, 1485, 1926, 1945, 1979
PspPPI RGGWCCY 1 cut(s) 1945
PstI CTGCAG 1 cut(s) 1270
PsuI RGATCY 4 cut(s) 30, 213, 375, 859
PvuI CGATCG 1 cut(s) 873
PvuII CAGCTG 1 cut(s) 1604
RruI TCGCGA 1 cut(s) 1062
RsaI GTAC 7 cut(s) 296, 313, 597, 1013, 1078, 1426, 1457
RsaNI GTAC 7 cut(s) 295, 312, 596, 1012, 1077, 1425, 1456
RseI CAYNNNNRTG 2 cut(s) 431, 971
SacI GAGCTC 2 cut(s) 270, 902
SalI GTCGAC 1 cut(s) 566
SapI GCTCTTC 1 cut(s) 956
SaqAI TTAA 4 cut(s) 14, 534, 1206, 1857
Sau96I GGNCC 6 cut(s) 387, 767, 1485, 1926, 1945, 1979
ScaI AGTACT 2 cut(s) 296, 1013
SchI GAGTC 1 cut(s) 1273
SduI GDGCHC 4 cut(s) 270, 902, 1865, 1936
SfaNI GCATC 2 cut(s) 327, 435
SfcI CTRYAG 1 cut(s) 1266
SfuI TTCGAA 4 cut(s) 495, 616, 1190, 1325
SinI GGWCC 2 cut(s) 1945, 1979
SmaI CCCGGG 1 cut(s) 317
SmiMI CAYNNNNRTG 2 cut(s) 431, 971
SmlI CTYRAG 1 cut(s) 1281
SmoI CTYRAG 1 cut(s) 1281
SphI GCATGC 1 cut(s) 1418
Sse9I AATT 8 cut(s) 346, 461, 663, 814, 982, 1719, 1762, 1955
SspMI CTAG 2 cut(s) 1673, 1911
SstI GAGCTC 2 cut(s) 270, 902
StyI CCWWGG 2 cut(s) 390, 1785
TaaI ACNGT 6 cut(s) 250, 311, 751, 1081, 1520, 1649
TaiI ACGT 3 cut(s) 435, 1640, 2022
TasI AATT 8 cut(s) 346, 461, 663, 814, 982, 1719, 1762, 1955
TatI WGTACW 3 cut(s) 294, 1011, 1076
TauI GCSGC 5 cut(s) 484, 705, 792, 1100, 1243
Tru1I TTAA 4 cut(s) 14, 534, 1206, 1857
Tru9I TTAA 4 cut(s) 14, 534, 1206, 1857
TscAI CASTG 3 cut(s) 996, 1654, 1936
TseFI GTSAC 4 cut(s) 865, 881, 1660, 1984
TseI GCWGC 6 cut(s) 226, 792, 1089, 1166, 1418, 1601
Tsp45I GTSAC 4 cut(s) 865, 881, 1660, 1984
TspDTI ATGAA 7 cut(s) 41, 359, 923, 974, 1127, 1968, 1977
TspGWI ACGGA 2 cut(s) 872, 1023
TspMI CCCGGG 1 cut(s) 315
TspRI CASTG 3 cut(s) 996, 1654, 1936
Van91I CCANNNNNTGG 1 cut(s) 1840
VpaK11BI GGWCC 2 cut(s) 1945, 1979
XapI RAATTY 4 cut(s) 346, 814, 1762, 1955
XbaI TCTAGA 1 cut(s) 1910
XceI RCATGY 1 cut(s) 1418
XcmI CCANNNNNNNNNTGG 1 cut(s) 1418
XmaI CCCGGG 1 cut(s) 315
XmiI GTMKAC 1 cut(s) 567
XmnI GAANNNNTTC 2 cut(s) 368, 914
XspI CTAG 2 cut(s) 1673, 1911
ZraI GACGTC 1 cut(s) 1638
ZrmI AGTACT 2 cut(s) 296, 1013
Zsp2I ATGCAT 1 cut(s) 1546
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.