RLG00000032358

Four repeated domains in the Fasciclin I family of proteins, present in many other contexts.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0005034
Physical Location & Seq
Reverse (-)
13928320 .. 13929521
1202 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032358

Sequence Viewer

Length: 831 bp
ATGGCGCCTCCATCTCTCTTCATTCTCCTCATCACCGCCTCTCTCACCCTCTTCAATCCATCCTCCTCCGCCGCCGCCTCCTCTTCTCCCCCAACCACCTCACCCCCATCACCGCCACCACAACCACCTCTTCCACCACCTCCACCTCCACCTCCATCACCATCACCGCCGCCGCCGTCACCTCCATCATCACCACCGCCGCCGCGATCAAAAATCTCAAGACCACCACTACTTCCGCTGCCGCCTCCATCTCCACTGCCTCCGCCTCCTCCGGCCGCAAGAGCGACGGGTCAGCAACTCAACAACATCATCGACGCTTTGATCGGCTCAGGCGACTTCGGGAGCTGGGTCAACATCATCACGGCCGCGAATCCGCTCGCCCTTCCACTGAGCGCCACCGTCTTCGTGCCTCAAAACGACGCCGTGACGCGTGTGCCGGCCGCCGACCCGTTCCTGTTGCCTTACCACGTGGTGCCTCAGCGGCTCACCTTCGCCGACCTCCGCCTCTTCAAGACCAACTCTCGCCTCCCGACTCTCCTTCCCGGAAAGTTCATCGTCGTCACCAGCAATTCCGAGTCCAATTTCACCGTTGACGACTCGACTATCACCCAGCCCGACGTCTACGTCACCGCCAACGTCGTCGTCCACGGCGTCGCTAGGGTTCTTGATTACTCTGTTTACGGCGTCGCAACAGTCGACTCTATGCCGAAGCCAAAGCAGCAGCCGTCGCCAGCGCCGCTGAGTCCGGGGCAGCTTCTTCCGGCCGGAGTCAGCATCCCGCCTTGGAAGTCCGAGTTGCATGTGAAGCATTACATTGAAGAGATGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

277

Amino Acids

29.02

Weight (kDa)

8.93

Isoelectric Point (pI)

85.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fasciclin PF02469 124 - 222 4.3e-11 Fasciclin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 623
AatII GACGTC 1 cut(s) 621
AccB1I GGYRCC 2 cut(s) 4, 472
AccBSI CCGCTC 1 cut(s) 376
AccI GTMKAC 2 cut(s) 621, 696
AccII CGCG 3 cut(s) 205, 368, 430
AcoI YGGCCR 4 cut(s) 273, 363, 438, 762
AcvI CACGTG 1 cut(s) 469
AcyI GRCGYC 5 cut(s) 5, 420, 618, 651, 684
AdeI CACNNNGTG 1 cut(s) 472
AflIII ACRYGT 1 cut(s) 428
AgsI TTSAA 3 cut(s) 55, 511, 818
AluBI AGCT 2 cut(s) 345, 754
AluI AGCT 2 cut(s) 345, 754
AoxI GGCC 4 cut(s) 273, 363, 438, 762
ApeKI GCWGC 4 cut(s) 238, 718, 721, 751
AspLEI GCGC 3 cut(s) 7, 395, 736
AsuC2I CCSGG 2 cut(s) 543, 747
BanI GGYRCC 2 cut(s) 4, 472
BbrPI CACGTG 1 cut(s) 469
BbsI GAAGAC 1 cut(s) 394
BbvCI CCTCAGC 1 cut(s) 477
BbvI GCAGC 4 cut(s) 225, 730, 733, 763
BccI CCATC 7 cut(s) 19, 67, 115, 163, 169, 193, 256
BceAI ACGGC 6 cut(s) 160, 378, 407, 664, 697, 709
BcnI CCSGG 2 cut(s) 543, 747
BfaI CTAG 1 cut(s) 657
BfoI RGCGCY 3 cut(s) 8, 396, 737
BglI GCCNNNNNGGC 1 cut(s) 481
Bme1390I CCNGG 2 cut(s) 543, 747
BmiI GGNNCC 2 cut(s) 6, 474
BmrFI CCNGG 2 cut(s) 543, 747
BmsI GCATC 1 cut(s) 783
BpiI GAAGAC 1 cut(s) 394
Bpu10I CCTNAGC 2 cut(s) 328, 477
BpuEI CTTGAG 1 cut(s) 202
BpuMI CCSGG 2 cut(s) 543, 747
BsaAI YACGTR 1 cut(s) 469
BsaHI GRCGYC 5 cut(s) 5, 420, 618, 651, 684
BsaJI CCNNGG 3 cut(s) 646, 746, 782
Bse118I RCCGGY 1 cut(s) 436
BseDI CCNNGG 3 cut(s) 646, 746, 782
BseGI GGATG 2 cut(s) 59, 774
BseMII CTCAG 4 cut(s) 342, 380, 491, 731
BseRI GAGGAG 4 cut(s) 17, 55, 70, 258
BseX3I CGGCCG 4 cut(s) 273, 363, 438, 762
BseXI GCAGC 4 cut(s) 225, 730, 733, 763
BseYI CCCAGC 2 cut(s) 345, 609
Bsh1236I CGCG 3 cut(s) 205, 368, 430
Bsh1285I CGRYCG 4 cut(s) 276, 366, 441, 765
BshFI GGCC 4 cut(s) 275, 365, 440, 764
BshNI GGYRCC 2 cut(s) 4, 472
BsiEI CGRYCG 4 cut(s) 276, 366, 441, 765
BsiSI CCGG 6 cut(s) 272, 437, 543, 746, 761, 765
BsnI GGCC 4 cut(s) 275, 365, 440, 764
Bsp143I GATC 2 cut(s) 206, 321
BspANI GGCC 4 cut(s) 275, 365, 440, 764
BspCNI CTCAG 4 cut(s) 341, 381, 490, 732
BspFNI CGCG 3 cut(s) 205, 368, 430
BspLI GGNNCC 2 cut(s) 6, 474
BspT107I GGYRCC 2 cut(s) 4, 472
BsrBI CCGCTC 1 cut(s) 376
BsrFI RCCGGY 1 cut(s) 436
BssAI RCCGGY 1 cut(s) 436
BssECI CCNNGG 3 cut(s) 646, 746, 782
BssMI GATC 2 cut(s) 206, 321
BssNI GRCGYC 5 cut(s) 5, 420, 618, 651, 684
BssT1I CCWWGG 1 cut(s) 782
Bst4CI ACNGT 3 cut(s) 400, 589, 694
Bst6I CTCTTC 6 cut(s) 23, 56, 88, 135, 512, 813
BstACI GRCGYC 5 cut(s) 5, 420, 618, 651, 684
BstBAI YACGTR 1 cut(s) 469
BstC8I GCNNGC 3 cut(s) 378, 438, 732
BstDEI CTNAG 4 cut(s) 328, 389, 477, 740
BstDSI CCRYGG 1 cut(s) 646
BstF5I GGATG 2 cut(s) 59, 774
BstFNI CGCG 3 cut(s) 205, 368, 430
BstH2I RGCGCY 3 cut(s) 8, 396, 737
BstHHI GCGC 3 cut(s) 7, 395, 736
BstKTI GATC 2 cut(s) 209, 324
BstMBI GATC 2 cut(s) 206, 321
BstMCI CGRYCG 4 cut(s) 276, 366, 441, 765
BstMWI GCNNNNNNNGC 6 cut(s) 281, 481, 718, 727, 736, 805
BstNSI RCATGY 1 cut(s) 803
BstSCI CCNGG 2 cut(s) 541, 745
BstUI CGCG 3 cut(s) 205, 368, 430
BstV1I GCAGC 4 cut(s) 225, 730, 733, 763
BstV2I GAAGAC 1 cut(s) 394
BstZI CGGCCG 4 cut(s) 273, 363, 438, 762
BsuRI GGCC 4 cut(s) 275, 365, 440, 764
BtgI CCRYGG 1 cut(s) 646
BtsCI GGATG 2 cut(s) 59, 774
BtsI GCAGTG 1 cut(s) 254
BtsIMutI CAGTG 2 cut(s) 254, 386
Cac8I GCNNGC 3 cut(s) 378, 438, 732
CfoI GCGC 3 cut(s) 7, 395, 736
Cfr10I RCCGGY 1 cut(s) 436
CseI GACGC 5 cut(s) 323, 428, 436, 640, 673
CviAII CATG 1 cut(s) 800
DdeI CTNAG 4 cut(s) 328, 389, 477, 740
DinI GGCGCC 1 cut(s) 6
DpnI GATC 2 cut(s) 208, 323
DpnII GATC 2 cut(s) 206, 321
DraIII CACNNNGTG 1 cut(s) 472
DrdI GACNNNNNNGTC 1 cut(s) 623
DseDI GACNNNNNNGTC 1 cut(s) 623
EaeI YGGCCR 4 cut(s) 273, 363, 438, 762
EagI CGGCCG 4 cut(s) 273, 363, 438, 762
Eam1104I CTCTTC 6 cut(s) 23, 56, 88, 135, 512, 813
EarI CTCTTC 6 cut(s) 23, 56, 88, 135, 512, 813
EciI GGCGGA 3 cut(s) 58, 252, 491
EclXI CGGCCG 4 cut(s) 273, 363, 438, 762
Eco130I CCWWGG 1 cut(s) 782
Eco52I CGGCCG 4 cut(s) 273, 363, 438, 762
Eco72I CACGTG 1 cut(s) 469
EcoT14I CCWWGG 1 cut(s) 782
EgeI GGCGCC 1 cut(s) 6
EheI GGCGCC 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 782
FaeI CATG 1 cut(s) 803
FaiI YATR 2 cut(s) 704, 801
FatI CATG 1 cut(s) 799
FauI CCCGC 1 cut(s) 786
FblI GTMKAC 2 cut(s) 621, 696
FokI GGATG 2 cut(s) 46, 761
FspBI CTAG 1 cut(s) 657
GlaI GCGC 3 cut(s) 6, 394, 735
GsaI CCCAGC 2 cut(s) 349, 613
HaeII RGCGCY 3 cut(s) 8, 396, 737
HaeIII GGCC 4 cut(s) 275, 365, 440, 764
HapII CCGG 6 cut(s) 272, 437, 543, 746, 761, 765
HgaI GACGC 5 cut(s) 323, 428, 436, 640, 673
HhaI GCGC 3 cut(s) 7, 395, 736
Hin1I GRCGYC 5 cut(s) 5, 420, 618, 651, 684
Hin1II CATG 1 cut(s) 803
Hin6I GCGC 3 cut(s) 5, 393, 734
HinP1I GCGC 3 cut(s) 5, 393, 734
HincII GTYRAC 3 cut(s) 352, 592, 697
HindII GTYRAC 3 cut(s) 352, 592, 697
HinfI GANTC 7 cut(s) 370, 532, 575, 596, 698, 742, 768
HpaII CCGG 6 cut(s) 272, 437, 543, 746, 761, 765
Hpy166II GTNNAC 6 cut(s) 352, 592, 622, 646, 679, 697
Hpy188I TCNGA 2 cut(s) 574, 793
Hpy188III TCNNGA 5 cut(s) 219, 340, 511, 529, 665
Hpy8I GTNNAC 6 cut(s) 352, 592, 622, 646, 679, 697
HpyAV CCTTC 3 cut(s) 392, 499, 548
HpyCH4III ACNGT 3 cut(s) 400, 589, 694
HpyCH4IV ACGT 4 cut(s) 468, 618, 624, 636
HpyCH4V TGCA 1 cut(s) 799
HpyF10VI GCNNNNNNNGC 6 cut(s) 281, 481, 718, 727, 736, 805
HpyF3I CTNAG 4 cut(s) 328, 389, 477, 740
HpySE526I ACGT 4 cut(s) 468, 618, 624, 636
Hsp92I GRCGYC 5 cut(s) 5, 420, 618, 651, 684
Hsp92II CATG 1 cut(s) 803
HspAI GCGC 3 cut(s) 5, 393, 734
KasI GGCGCC 1 cut(s) 4
KroI GCCGGC 1 cut(s) 436
KroNI GCCGGC 1 cut(s) 438
Kzo9I GATC 2 cut(s) 206, 321
LmnI GCTCC 1 cut(s) 342
Lsp1109I GCAGC 4 cut(s) 225, 730, 733, 763
LweI GCATC 1 cut(s) 783
MaeI CTAG 1 cut(s) 657
MaeII ACGT 4 cut(s) 468, 618, 624, 636
MaeIII GTNAC 4 cut(s) 177, 424, 559, 625
MalI GATC 2 cut(s) 208, 323
MbiI CCGCTC 1 cut(s) 376
MboI GATC 2 cut(s) 206, 321
MboII GAAGA 8 cut(s) 10, 43, 75, 122, 394, 499, 749, 830
MluCI AATT 2 cut(s) 568, 580
MluI ACGCGT 1 cut(s) 428
Mly113I GGCGCC 1 cut(s) 5
MlyI GAGTC 6 cut(s) 526, 584, 590, 692, 751, 777
MroNI GCCGGC 1 cut(s) 436
MspA1I CMGCKG 3 cut(s) 238, 481, 739
MspI CCGG 6 cut(s) 272, 437, 543, 746, 761, 765
MspR9I CCNGG 2 cut(s) 543, 747
MvnI CGCG 3 cut(s) 205, 368, 430
MwoI GCNNNNNNNGC 6 cut(s) 281, 481, 718, 727, 736, 805
NaeI GCCGGC 1 cut(s) 438
NarI GGCGCC 1 cut(s) 5
NciI CCSGG 2 cut(s) 543, 747
NdeII GATC 2 cut(s) 206, 321
NgoMIV GCCGGC 1 cut(s) 436
NlaIII CATG 1 cut(s) 803
NlaIV GGNNCC 2 cut(s) 6, 474
NmuCI GTSAC 4 cut(s) 177, 424, 559, 625
NspI RCATGY 1 cut(s) 803
PcsI WCGNNNNNNNCGW 3 cut(s) 330, 648, 693
PdiI GCCGGC 1 cut(s) 438
PfeI GAWTC 1 cut(s) 370
PfoI TCCNGGA 1 cut(s) 541
PleI GAGTC 6 cut(s) 526, 583, 590, 692, 750, 776
PluTI GGCGCC 1 cut(s) 8
PmaCI CACGTG 1 cut(s) 469
PmlI CACGTG 1 cut(s) 469
PpsI GAGTC 6 cut(s) 526, 583, 590, 692, 750, 776
Ppu21I YACGTR 1 cut(s) 469
PspCI CACGTG 1 cut(s) 469
PspFI CCCAGC 2 cut(s) 345, 609
PspN4I GGNNCC 2 cut(s) 6, 474
SalI GTCGAC 1 cut(s) 695
Sau3AI GATC 2 cut(s) 206, 321
SchI GAGTC 6 cut(s) 526, 584, 590, 692, 751, 777
ScrFI CCNGG 2 cut(s) 543, 747
SfaNI GCATC 1 cut(s) 783
SfoI GGCGCC 1 cut(s) 6
SmlI CTYRAG 1 cut(s) 217
SmoI CTYRAG 1 cut(s) 217
Sse9I AATT 2 cut(s) 568, 580
SspDI GGCGCC 1 cut(s) 4
SspMI CTAG 1 cut(s) 657
StyD4I CCNGG 2 cut(s) 541, 745
StyI CCWWGG 1 cut(s) 782
TaaI ACNGT 3 cut(s) 400, 589, 694
TaiI ACGT 4 cut(s) 471, 621, 627, 639
TaqI TCGA 3 cut(s) 312, 599, 696
TasI AATT 2 cut(s) 568, 580
TfiI GAWTC 1 cut(s) 370
TscAI CASTG 2 cut(s) 261, 393
TseFI GTSAC 4 cut(s) 177, 424, 559, 625
TseI GCWGC 4 cut(s) 238, 718, 721, 751
Tsp45I GTSAC 4 cut(s) 177, 424, 559, 625
TspDTI ATGAA 2 cut(s) 10, 541
TspRI CASTG 2 cut(s) 261, 393
XceI RCATGY 1 cut(s) 803
XmiI GTMKAC 2 cut(s) 621, 696
XspI CTAG 1 cut(s) 657
ZraI GACGTC 1 cut(s) 619
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.