Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001888

Physical Location & Seq

Genomic Coordinates Reverse (-)

12283725 .. 12285371

Gene Structure 1647 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G33840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGCAGCAGCCCTATGAGTACCGTTACCCACAAGGCACTGGCCCTTCGGCTCCTCCGCCGCCTCCAAAAGCCGGAGTGATAGTGGATCCAAAGTACTGCTCTCTGCACCCTGTAGATTTGGCGATCGTACGGAAGGTGTTGAAGATAACGGACGGTAACTTCGTGATAACGAATGCGGAAGGAAACTTGTTGTTCAAGGTGAAGGATCCTTTTTTTAGTCTTCACGAGAAGAGGATCTTGATGGATGGTTTTGGAACTAAGGTCTTGACTTTGAAAGGGAAGATAATGACCATGCATGACAGGTGGCTAGTGTTTAGAGGAGGGAGTACGGAGGAGGTTGATCTGCTATACACGGTGAAAAGATCAAACATGGTTCAGATAACCACCAAACTTGATGTGTTTTTGGCTGATAACATAGAGCAGAAGAAATGTGATTACAGACTCGAAGGGGTTTGGCTCGAGACTTCTTGTTTTGTCTACGCTGGCGATTCTGACATCATTCTTGCCCAAATGCGCGAGAAGAAAACGATGCAGAGCGTTCTCTTTGGAAAGGACAATTTCTGCCTCACTGTTAATCCAAATGTTGATTATGCCTTCATTGCCTCTCTCATTGTCATCCTTGTAGAAATACAAATAAGTCTTAGAAAATTAACAAAACAACTCTTGCTTTTAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009725 GO:0009751 GO:0010033 GO:0014070 GO:0042221 GO:0042493 GO:0043207 GO:0046677 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0098542 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOR

Protein Analysis

225

Amino Acids

25.56

Weight (kDa)

8.57

Isoelectric Point (pI)

33.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LOR	PF04525	38 - 207	3.3e-42	LURP-one-related

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001888)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33840 AT1G33840 AT2G14560 AT2G14560 AT2G14560 AT2G14560 AT3G11740 AT5G01750 AT5G01750
fragaria_vesca	FvH4_6g10350 FvH4_6g10360 FvH4_6g10360
malus_domestica	MD04G1169400.v1.1 MD12G1182900.v1.1
prunus_persica	Prupe.6G287400_v2.0.a1 Prupe.6G287500_v2.0.a1 Prupe.6G287900_v2.0.a1
pyrus_communis	pycom04g15000 pycom12g17170
rosa_chinensis	RchiOBHm_Chr3g0461171 RchiOBHm_Chr3g0461181 RchiOBHm_Chr3g0461261
rosa_laevigata	RLG00000024947 RLG00000024948
rosa_multiflora	Rmu_sc0009344.1_g000007 Rmu_sc0009344.1_g000008
rosa_roxburghii	Rroxscaffold_6G00418740 Rroxscaffold_6G00418760 Rroxscaffold_6G00418810 Rroxscaffold_6G00418820
rosa_rugosa	Rorug03G0048800 Rorug03G0048800 Rorug03G0048900 Rorug03G0049300
rosa_samantha	Rh3AG106000 Rh3AG106100 Rh3BG110300 Rh3BG110400 Rh3BG110800 Rh3CG111900 Rh3CG112000 Rh3DG112100 Rh3DG112200 Rh3DG112600
rosa_wichuraiana	Rw3G009090 Rw3G009130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	477
AccII	CGCG	1 cut(s)	516
AciI	CCGC	3 cut(s)	56, 59, 176
AclWI	GGATC	5 cut(s)	80, 93, 200, 213, 242
AfaI	GTAC	4 cut(s)	20, 95, 129, 328
AfiI	CCNNNNNNNGG	1 cut(s)	71
AgsI	TTSAA	3 cut(s)	142, 196, 274
Alw26I	GTCTC	1 cut(s)	455
AlwI	GGATC	5 cut(s)	80, 93, 200, 213, 242
Ama87I	CYCGRG	1 cut(s)	458
AoxI	GGCC	1 cut(s)	40
ApeKI	GCWGC	2 cut(s)	4, 7
ArsI	GACNNNNNNTTYG	2 cut(s)	143, 175
AspLEI	GCGC	1 cut(s)	516
AspS9I	GGNCC	1 cut(s)	41
AsuHPI	GGTGA	2 cut(s)	211, 367
AvaI	CYCGRG	1 cut(s)	458
BamHI	GGATCC	2 cut(s)	85, 205
BauI	CACGAG	1 cut(s)	224
BbsI	GAAGAC	1 cut(s)	212
BbvI	GCAGC	2 cut(s)	16, 19
BccI	CCATC	2 cut(s)	235, 239
BcoDI	GTCTC	1 cut(s)	455
BfaI	CTAG	1 cut(s)	308
BfmI	CTRYAG	1 cut(s)	111
BisI	GCNGC	3 cut(s)	5, 8, 59
BlsI	GCNGC	3 cut(s)	6, 9, 60
BmcAI	AGTACT	1 cut(s)	95
BmeT110I	CYCGRG	1 cut(s)	458
BmgT120I	GGNCC	1 cut(s)	41
BmiI	GGNNCC	3 cut(s)	51, 87, 207
BmsI	GCATC	1 cut(s)	519
BpiI	GAAGAC	1 cut(s)	212
BsaXI	ACNNNNNCTCC	2 cut(s)	66, 96
Bsc4I	CCNNNNNNNGG	1 cut(s)	71
Bse1I	ACTGG	1 cut(s)	43
Bse3DI	GCAATG	1 cut(s)	597
BseGI	GGATG	2 cut(s)	250, 615
BseLI	CCNNNNNNNGG	1 cut(s)	71
BseMI	GCAATG	1 cut(s)	597
BseNI	ACTGG	1 cut(s)	43
BseRI	GAGGAG	3 cut(s)	42, 333, 347
BseXI	GCAGC	2 cut(s)	16, 19
BsgI	GTGCAG	1 cut(s)	89
Bsh1236I	CGCG	1 cut(s)	516
Bsh1285I	CGRYCG	1 cut(s)	126
BshFI	GGCC	1 cut(s)	42
BsiEI	CGRYCG	1 cut(s)	126
BsiHKCI	CYCGRG	1 cut(s)	458
BsiSI	CCGG	1 cut(s)	72
BsiWI	CGTACG	1 cut(s)	127
BslI	CCNNNNNNNGG	1 cut(s)	71
BsmAI	GTCTC	1 cut(s)	455
BsmI	GAATGC	1 cut(s)	178
BsnI	GGCC	1 cut(s)	42
BsoBI	CYCGRG	1 cut(s)	458
Bsp143I	GATC	6 cut(s)	85, 123, 205, 234, 340, 362
BspACI	CCGC	3 cut(s)	56, 59, 176
BspANI	GGCC	1 cut(s)	42
BspFNI	CGCG	1 cut(s)	516
BspLI	GGNNCC	3 cut(s)	51, 87, 207
BspPI	GGATC	5 cut(s)	80, 93, 200, 213, 242
BsrDI	GCAATG	1 cut(s)	597
BsrI	ACTGG	1 cut(s)	43
BssMI	GATC	6 cut(s)	85, 123, 205, 234, 340, 362
BssSI	CACGAG	1 cut(s)	224
Bst2BI	CACGAG	1 cut(s)	224
Bst4CI	ACNGT	4 cut(s)	23, 155, 355, 571
Bst6I	CTCTTC	1 cut(s)	224
BstC8I	GCNNGC	1 cut(s)	484
BstDEI	CTNAG	2 cut(s)	258, 641
BstF5I	GGATG	2 cut(s)	250, 615
BstFNI	CGCG	1 cut(s)	516
BstHHI	GCGC	1 cut(s)	516
BstKTI	GATC	6 cut(s)	88, 126, 208, 237, 343, 365
BstMAI	GTCTC	1 cut(s)	455
BstMBI	GATC	6 cut(s)	85, 123, 205, 234, 340, 362
BstMCI	CGRYCG	1 cut(s)	126
BstMWI	GCNNNNNNNGC	1 cut(s)	599
BstSFI	CTRYAG	1 cut(s)	111
BstUI	CGCG	1 cut(s)	516
BstV1I	GCAGC	2 cut(s)	16, 19
BstV2I	GAAGAC	1 cut(s)	212
BstX2I	RGATCY	3 cut(s)	85, 205, 234
BstYI	RGATCY	3 cut(s)	85, 205, 234
BsuRI	GGCC	1 cut(s)	42
BtsCI	GGATG	2 cut(s)	250, 615
BtsIMutI	CAGTG	2 cut(s)	36, 567
Cac8I	GCNNGC	1 cut(s)	484
CfoI	GCGC	1 cut(s)	516
Cfr13I	GGNCC	1 cut(s)	41
Csp6I	GTAC	4 cut(s)	19, 94, 128, 327
CspCI	CAANNNNNGTGG	2 cut(s)	373, 408
CviAII	CATG	3 cut(s)	292, 296, 370
CviJI	RGCY	7 cut(s)	10, 42, 50, 71, 307, 407, 457
CviKI_1	RGCY	7 cut(s)	10, 42, 50, 71, 307, 407, 457
CviQI	GTAC	4 cut(s)	19, 94, 128, 327
DdeI	CTNAG	2 cut(s)	258, 641
DpnI	GATC	6 cut(s)	87, 125, 207, 236, 342, 364
DpnII	GATC	6 cut(s)	85, 123, 205, 234, 340, 362
Eam1104I	CTCTTC	1 cut(s)	224
EarI	CTCTTC	1 cut(s)	224
EciI	GGCGGA	1 cut(s)	45
Eco88I	CYCGRG	1 cut(s)	458
EcoT22I	ATGCAT	1 cut(s)	297
FaeI	CATG	3 cut(s)	295, 299, 373
FaiI	YATR	7 cut(s)	15, 293, 297, 349, 371, 416, 591
FalI	AAGNNNNNCTT	2 cut(s)	221, 253
FatI	CATG	3 cut(s)	291, 295, 369
FblI	GTMKAC	1 cut(s)	477
Fnu4HI	GCNGC	3 cut(s)	5, 8, 59
FokI	GGATG	2 cut(s)	257, 602
Fsp4HI	GCNGC	3 cut(s)	5, 8, 59
FspBI	CTAG	1 cut(s)	308
GlaI	GCGC	1 cut(s)	515
GluI	GCNGC	3 cut(s)	5, 8, 59
HaeIII	GGCC	1 cut(s)	42
HapII	CCGG	1 cut(s)	72
HhaI	GCGC	1 cut(s)	516
Hin1II	CATG	3 cut(s)	295, 299, 373
Hin6I	GCGC	1 cut(s)	514
HinP1I	GCGC	1 cut(s)	514
HinfI	GANTC	2 cut(s)	441, 488
HpaII	CCGG	1 cut(s)	72
HphI	GGTGA	2 cut(s)	211, 367
Hpy166II	GTNNAC	1 cut(s)	478
Hpy188I	TCNGA	2 cut(s)	378, 493
Hpy188III	TCNNGA	5 cut(s)	163, 224, 238, 265, 460
Hpy8I	GTNNAC	1 cut(s)	478
HpyAV	CCTTC	6 cut(s)	54, 127, 173, 196, 440, 604
HpyCH4III	ACNGT	4 cut(s)	23, 155, 355, 571
HpyCH4V	TGCA	4 cut(s)	4, 106, 295, 532
HpyF10VI	GCNNNNNNNGC	1 cut(s)	599
HpyF3I	CTNAG	2 cut(s)	258, 641
Hsp92II	CATG	3 cut(s)	295, 299, 373
HspAI	GCGC	1 cut(s)	514
Kzo9I	GATC	6 cut(s)	85, 123, 205, 234, 340, 362
LmnI	GCTCC	1 cut(s)	55
LpnPI	CCDG	5 cut(s)	24, 85, 123, 286, 468
Lsp1109I	GCAGC	2 cut(s)	16, 19
LweI	GCATC	1 cut(s)	519
MaeI	CTAG	1 cut(s)	308
MaeIII	GTNAC	2 cut(s)	23, 155
MalI	GATC	6 cut(s)	87, 125, 207, 236, 342, 364
MboI	GATC	6 cut(s)	85, 123, 205, 234, 340, 362
MboII	GAAGA	6 cut(s)	154, 212, 241, 292, 436, 532
MflI	RGATCY	3 cut(s)	85, 205, 234
MluCI	AATT	2 cut(s)	556, 647
MlyI	GAGTC	1 cut(s)	435
MnlI	CCTC	9 cut(s)	63, 72, 225, 311, 314, 325, 328, 575, 613
Mph1103I	ATGCAT	1 cut(s)	297
MseI	TTAA	2 cut(s)	573, 650
MspI	CCGG	1 cut(s)	72
Mva1269I	GAATGC	1 cut(s)	178
MvnI	CGCG	1 cut(s)	516
MwoI	GCNNNNNNNGC	1 cut(s)	599
NdeII	GATC	6 cut(s)	85, 123, 205, 234, 340, 362
NlaIII	CATG	3 cut(s)	295, 299, 373
NlaIV	GGNNCC	3 cut(s)	51, 87, 207
NsiI	ATGCAT	1 cut(s)	297
PaeR7I	CTCGAG	1 cut(s)	458
PcsI	WCGNNNNNNNCGW	1 cut(s)	159
PctI	GAATGC	1 cut(s)	178
PfeI	GAWTC	1 cut(s)	488
Pfl23II	CGTACG	1 cut(s)	127
PkrI	GCNGC	3 cut(s)	6, 9, 60
Ple19I	CGATCG	1 cut(s)	126
PleI	GAGTC	1 cut(s)	435
PpsI	GAGTC	1 cut(s)	435
PspLI	CGTACG	1 cut(s)	127
PspN4I	GGNNCC	3 cut(s)	51, 87, 207
PspPI	GGNCC	1 cut(s)	41
PsuI	RGATCY	3 cut(s)	85, 205, 234
PvuI	CGATCG	1 cut(s)	126
RsaI	GTAC	4 cut(s)	20, 95, 129, 328
RsaNI	GTAC	4 cut(s)	19, 94, 128, 327
SaqAI	TTAA	2 cut(s)	573, 650
SatI	GCNGC	3 cut(s)	5, 8, 59
Sau3AI	GATC	6 cut(s)	85, 123, 205, 234, 340, 362
Sau96I	GGNCC	1 cut(s)	41
ScaI	AGTACT	1 cut(s)	95
SchI	GAGTC	1 cut(s)	435
SetI	ASST	5 cut(s)	138, 201, 264, 305, 339
SfaNI	GCATC	1 cut(s)	519
SfcI	CTRYAG	1 cut(s)	111
Sfr274I	CTCGAG	1 cut(s)	458
SlaI	CTCGAG	1 cut(s)	458
SmlI	CTYRAG	1 cut(s)	458
SmoI	CTYRAG	1 cut(s)	458
Sse9I	AATT	2 cut(s)	556, 647
SsiI	CCGC	3 cut(s)	56, 59, 176
SspMI	CTAG	1 cut(s)	308
TaaI	ACNGT	4 cut(s)	23, 155, 355, 571
TaqI	TCGA	2 cut(s)	444, 459
TasI	AATT	2 cut(s)	556, 647
TatI	WGTACW	1 cut(s)	93
TauI	GCSGC	1 cut(s)	61
TfiI	GAWTC	1 cut(s)	488
Tru1I	TTAA	2 cut(s)	573, 650
Tru9I	TTAA	2 cut(s)	573, 650
TscAI	CASTG	2 cut(s)	43, 574
TseI	GCWGC	2 cut(s)	4, 7
TspDTI	ATGAA	1 cut(s)	586
TspGWI	ACGGA	3 cut(s)	145, 164, 344
TspRI	CASTG	2 cut(s)	43, 574
XhoI	CTCGAG	1 cut(s)	458
XmiI	GTMKAC	1 cut(s)	477
XspI	CTAG	1 cut(s)	308
ZrmI	AGTACT	1 cut(s)	95
Zsp2I	ATGCAT	1 cut(s)	297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.