Rh3DG112600

LURP-one-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0001888
Physical Location & Seq
Reverse (-)
9268155 .. 9268928
774 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG112600.1

Sequence Viewer

Length: 366 bp
ATGTGCAGTTCATCCACGAATGGAACGTTAATTTATAGGGGCAGTAGCAAAGAACCAAGTGATCTGGTTTTTAGTGCAATCAAATCTTCAATGTTTCAGTTCAATACAAGATTGCATATTTTCTTAGCAAGAAACACCACAATGAATGCGCCCGATTTCAAGATTAAGGGAAGCTGGCTCCAACGATCCTGCCTCATATATGCTGGGGATTCTTCCACCATCATTGCCGAAATGCATAAGAAGGACACAGTTCAAAGTGTGCTGTTTGGCAAGGACAATTTCATGGTTAGAGTATGTCCTGGTATTGACTATGCATCCACTGCCACGCTTATTGTGATCCTTGATGCGATTAATGGTGATAGATAG

Protein Analysis

121

Amino Acids

13.38

Weight (kDa)

8.88

Isoelectric Point (pI)

38.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOR PF04525 11 - 115 1.5e-24 LURP-one-related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 26
AclWI GGATC 2 cut(s) 180, 331
AgsI TTSAA 4 cut(s) 90, 103, 160, 254
AjnI CCWGG 1 cut(s) 298
AluBI AGCT 1 cut(s) 174
AluI AGCT 1 cut(s) 174
AlwI GGATC 2 cut(s) 180, 331
AseI ATTAAT 1 cut(s) 351
AspLEI GCGC 1 cut(s) 151
BccI CCATC 1 cut(s) 227
BciT130I CCWGG 1 cut(s) 300
Bme1390I CCNGG 1 cut(s) 300
BmiI GGNNCC 1 cut(s) 179
BmrFI CCNGG 1 cut(s) 300
BmsI GCATC 2 cut(s) 323, 334
Bse3DI GCAATG 1 cut(s) 222
BseBI CCWGG 1 cut(s) 300
BseGI GGATG 2 cut(s) 11, 314
BseMI GCAATG 1 cut(s) 222
BseYI CCCAGC 1 cut(s) 203
BsgI GTGCAG 1 cut(s) 25
BsmI GAATGC 1 cut(s) 151
Bsp143I GATC 3 cut(s) 61, 185, 336
BspLI GGNNCC 1 cut(s) 179
BspPI GGATC 2 cut(s) 180, 331
BsrDI GCAATG 1 cut(s) 222
BssMI GATC 3 cut(s) 61, 185, 336
Bst2UI CCWGG 1 cut(s) 300
Bst4CI ACNGT 1 cut(s) 250
BstAPI GCANNNNNTGC 1 cut(s) 320
BstC8I GCNNGC 1 cut(s) 176
BstDEI CTNAG 1 cut(s) 124
BstF5I GGATG 2 cut(s) 11, 314
BstHHI GCGC 1 cut(s) 151
BstKTI GATC 3 cut(s) 64, 188, 339
BstMBI GATC 3 cut(s) 61, 185, 336
BstMWI GCNNNNNNNGC 1 cut(s) 320
BstNI CCWGG 1 cut(s) 300
BstSCI CCNGG 1 cut(s) 298
BtsCI GGATG 2 cut(s) 11, 314
BtsI GCAGTG 1 cut(s) 318
BtsIMutI CAGTG 1 cut(s) 318
Cac8I GCNNGC 1 cut(s) 176
CfoI GCGC 1 cut(s) 151
CspCI CAANNNNNGTGG 4 cut(s) 205, 240, 313, 348
CviAII CATG 1 cut(s) 283
CviJI RGCY 2 cut(s) 174, 178
CviKI_1 RGCY 2 cut(s) 174, 178
DdeI CTNAG 1 cut(s) 124
DpnI GATC 3 cut(s) 63, 187, 338
DpnII GATC 3 cut(s) 61, 185, 336
EcoRII CCWGG 1 cut(s) 298
EcoT22I ATGCAT 2 cut(s) 237, 316
FaeI CATG 1 cut(s) 286
FaiI YATR 9 cut(s) 36, 117, 197, 199, 201, 237, 284, 295, 312
FatI CATG 1 cut(s) 282
FokI GGATG 1 cut(s) 301
GlaI GCGC 1 cut(s) 150
GsaI CCCAGC 1 cut(s) 207
HhaI GCGC 1 cut(s) 151
Hin1II CATG 1 cut(s) 286
Hin6I GCGC 1 cut(s) 149
HinP1I GCGC 1 cut(s) 149
HinfI GANTC 1 cut(s) 209
Hpy188III TCNNGA 1 cut(s) 160
HpyAV CCTTC 1 cut(s) 235
HpyCH4III ACNGT 1 cut(s) 250
HpyCH4IV ACGT 1 cut(s) 26
HpyCH4V TGCA 5 cut(s) 6, 77, 115, 235, 314
HpyF10VI GCNNNNNNNGC 1 cut(s) 320
HpyF3I CTNAG 1 cut(s) 124
HpySE526I ACGT 1 cut(s) 26
Hsp92II CATG 1 cut(s) 286
HspAI GCGC 1 cut(s) 149
Kzo9I GATC 3 cut(s) 61, 185, 336
LmnI GCTCC 1 cut(s) 183
LpnPI CCDG 6 cut(s) 50, 160, 189, 202, 285, 312
LweI GCATC 2 cut(s) 323, 334
MaeII ACGT 1 cut(s) 26
MalI GATC 3 cut(s) 63, 187, 338
MboI GATC 3 cut(s) 61, 185, 336
MboII GAAGA 2 cut(s) 78, 204
MluCI AATT 2 cut(s) 30, 277
MmeI TCCRAC 1 cut(s) 205
MnlI CCTC 1 cut(s) 203
Mph1103I ATGCAT 2 cut(s) 237, 316
MseI TTAA 3 cut(s) 29, 165, 351
MslI CAYNNNNRTG 1 cut(s) 140
MspR9I CCNGG 1 cut(s) 300
Mva1269I GAATGC 1 cut(s) 151
MvaI CCWGG 1 cut(s) 300
MwoI GCNNNNNNNGC 1 cut(s) 320
NdeII GATC 3 cut(s) 61, 185, 336
NlaIII CATG 1 cut(s) 286
NlaIV GGNNCC 1 cut(s) 179
NsiI ATGCAT 2 cut(s) 237, 316
PcsI WCGNNNNNNNCGW 1 cut(s) 23
PctI GAATGC 1 cut(s) 151
PfeI GAWTC 1 cut(s) 209
PshBI ATTAAT 1 cut(s) 351
Psp1406I AACGTT 1 cut(s) 26
Psp6I CCWGG 1 cut(s) 298
PspFI CCCAGC 1 cut(s) 203
PspGI CCWGG 1 cut(s) 298
PspN4I GGNNCC 1 cut(s) 179
RseI CAYNNNNRTG 1 cut(s) 140
SaqAI TTAA 3 cut(s) 29, 165, 351
Sau3AI GATC 3 cut(s) 61, 185, 336
ScrFI CCNGG 1 cut(s) 300
SetI ASST 2 cut(s) 29, 176
SfaNI GCATC 2 cut(s) 323, 334
SmiMI CAYNNNNRTG 1 cut(s) 140
Sse9I AATT 2 cut(s) 30, 277
StyD4I CCNGG 1 cut(s) 298
TaaI ACNGT 1 cut(s) 250
TaiI ACGT 1 cut(s) 29
TasI AATT 2 cut(s) 30, 277
TfiI GAWTC 1 cut(s) 209
Tru1I TTAA 3 cut(s) 29, 165, 351
Tru9I TTAA 3 cut(s) 29, 165, 351
TscAI CASTG 1 cut(s) 325
TspDTI ATGAA 2 cut(s) 158, 271
TspRI CASTG 1 cut(s) 325
VspI ATTAAT 1 cut(s) 351
Zsp2I ATGCAT 2 cut(s) 237, 316
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.