Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0001888

Physical Location & Seq

Genomic Coordinates Forward (+)

19505078 .. 19506187

Gene Structure 1110 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g17170.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGATAAGATCGATCTTTAAAGTGAAGGGAGTTCGATGGAGCCGTCATGATCGTCGAGTCTTGCTCGATACTGCCGGATATCCTATTGTCACCCTAAGAAAGAAGTTGATGAGTGCACATGAAAGATGGCAAGTTTTCCGGGGGGATAGCAAAGACTCAAGGGATCTGATTTTTAGTGCCAAGAGATCTTCACTGCTGCAATTTAATACCAAACTAGATGTTTTCTTAGCACAAAACACAGCAGAGAATGCACCGGACTTCAGAGTCAAGGGAAGTTGGTTTGAACGATCTTGTACCATATATGCTGGGAACTCCTCCACAATCATTGCCCAAATGCATAAGAAGCGAACAGTTGCAAGCATGTTGATTGGCAAGGACAATTTCATGGTGACAGTGTATCCCGGGATTGACTACGCTTTCATTGTCGCGCTTATTGTGATTCTTGATGAGATTAATAGTGATGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009725 GO:0009751 GO:0010033 GO:0014070 GO:0042221 GO:0042493 GO:0043207 GO:0046677 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0098542 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOR

Protein Analysis

156

Amino Acids

17.78

Weight (kDa)

9.83

Isoelectric Point (pI)

50.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001888)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33840 AT1G33840 AT2G14560 AT2G14560 AT2G14560 AT2G14560 AT3G11740 AT5G01750 AT5G01750
fragaria_vesca	FvH4_6g10350 FvH4_6g10360 FvH4_6g10360
malus_domestica	MD04G1169400.v1.1 MD12G1182900.v1.1
prunus_persica	Prupe.6G287400_v2.0.a1 Prupe.6G287500_v2.0.a1 Prupe.6G287900_v2.0.a1
pyrus_communis	pycom04g15000 pycom12g17170
rosa_chinensis	RchiOBHm_Chr3g0461171 RchiOBHm_Chr3g0461181 RchiOBHm_Chr3g0461261
rosa_laevigata	RLG00000024947 RLG00000024948
rosa_multiflora	Rmu_sc0009344.1_g000007 Rmu_sc0009344.1_g000008
rosa_roxburghii	Rroxscaffold_6G00418740 Rroxscaffold_6G00418760 Rroxscaffold_6G00418810 Rroxscaffold_6G00418820
rosa_rugosa	Rorug03G0048800 Rorug03G0048800 Rorug03G0048900 Rorug03G0049300
rosa_samantha	Rh3AG106000 Rh3AG106100 Rh3BG110300 Rh3BG110400 Rh3BG110800 Rh3CG111900 Rh3CG112000 Rh3DG112100 Rh3DG112200 Rh3DG112600
rosa_wichuraiana	Rw3G009090 Rw3G009130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	263
AccII	CGCG	1 cut(s)	428
AclWI	GGATC	1 cut(s)	171
AcuI	CTGAAG	1 cut(s)	244
AfaI	GTAC	1 cut(s)	295
AgsI	TTSAA	1 cut(s)	284
Alw21I	GWGCWC	1 cut(s)	118
Alw44I	GTGCAC	1 cut(s)	114
AlwI	GGATC	1 cut(s)	171
Ama87I	CYCGRG	1 cut(s)	401
ApaLI	GTGCAC	1 cut(s)	114
ApeKI	GCWGC	1 cut(s)	196
AseI	ATTAAT	1 cut(s)	453
AspLEI	GCGC	1 cut(s)	430
AsuC2I	CCSGG	3 cut(s)	140, 402, 403
AsuHPI	GGTGA	2 cut(s)	82, 400
AvaI	CYCGRG	1 cut(s)	401
BaeGI	GKGCMC	1 cut(s)	118
Bbv12I	GWGCWC	1 cut(s)	118
BbvI	GCAGC	1 cut(s)	183
BccI	CCATC	2 cut(s)	30, 120
BceAI	ACGGC	1 cut(s)	27
BciVI	GTATCC	1 cut(s)	408
BcnI	CCSGG	3 cut(s)	140, 402, 403
BfaI	CTAG	1 cut(s)	215
BfuI	GTATCC	1 cut(s)	408
BglII	AGATCT	1 cut(s)	185
BisI	GCNGC	1 cut(s)	197
BlsI	GCNGC	1 cut(s)	198
Bme1390I	CCNGG	3 cut(s)	140, 402, 403
BmeT110I	CYCGRG	1 cut(s)	401
BmiI	GGNNCC	1 cut(s)	41
BmrFI	CCNGG	3 cut(s)	140, 402, 403
BplI	GAGNNNNNCTC	2 cut(s)	48, 80
BpuEI	CTTGAG	1 cut(s)	142
BpuMI	CCSGG	3 cut(s)	140, 402, 403
Bsa29I	ATCGAT	1 cut(s)	11
BsaJI	CCNNGG	2 cut(s)	139, 401
BsaWI	WCCGGW	1 cut(s)	253
Bse3DI	GCAATG	1 cut(s)	324
BseCI	ATCGAT	1 cut(s)	11
BseDI	CCNNGG	2 cut(s)	139, 401
BseMI	GCAATG	1 cut(s)	324
BseRI	GAGGAG	1 cut(s)	304
BseSI	GKGCMC	1 cut(s)	118
BseXI	GCAGC	1 cut(s)	183
BseYI	CCCAGC	1 cut(s)	305
Bsh1236I	CGCG	1 cut(s)	428
BshVI	ATCGAT	1 cut(s)	11
BsiHKAI	GWGCWC	1 cut(s)	118
BsiHKCI	CYCGRG	1 cut(s)	401
BsiSI	CCGG	4 cut(s)	75, 139, 254, 402
BsmI	GAATGC	1 cut(s)	253
BsoBI	CYCGRG	1 cut(s)	401
Bsp1286I	GDGCHC	1 cut(s)	118
Bsp143I	GATC	6 cut(s)	8, 12, 49, 163, 185, 287
BspDI	ATCGAT	1 cut(s)	11
BspFNI	CGCG	1 cut(s)	428
BspHI	TCATGA	1 cut(s)	46
BspLI	GGNNCC	1 cut(s)	41
BspPI	GGATC	1 cut(s)	171
BsrDI	GCAATG	1 cut(s)	324
BssECI	CCNNGG	2 cut(s)	139, 401
BssMI	GATC	6 cut(s)	8, 12, 49, 163, 185, 287
Bst4CI	ACNGT	2 cut(s)	352, 394
BstAPI	GCANNNNNTGC	1 cut(s)	248
BstC8I	GCNNGC	1 cut(s)	358
BstDEI	CTNAG	2 cut(s)	95, 226
BstFNI	CGCG	1 cut(s)	428
BstHHI	GCGC	1 cut(s)	430
BstKTI	GATC	6 cut(s)	11, 15, 52, 166, 188, 290
BstMBI	GATC	6 cut(s)	8, 12, 49, 163, 185, 287
BstMWI	GCNNNNNNNGC	2 cut(s)	248, 343
BstNSI	RCATGY	1 cut(s)	364
BstSCI	CCNGG	3 cut(s)	138, 400, 401
BstSLI	GKGCMC	1 cut(s)	118
BstUI	CGCG	1 cut(s)	428
BstV1I	GCAGC	1 cut(s)	183
BstX2I	RGATCY	2 cut(s)	163, 185
BstYI	RGATCY	2 cut(s)	163, 185
Bsu15I	ATCGAT	1 cut(s)	11
BsuI	GTATCC	1 cut(s)	408
BsuTUI	ATCGAT	1 cut(s)	11
BtsI	GCAGTG	1 cut(s)	191
BtsIMutI	CAGTG	2 cut(s)	191, 399
Cac8I	GCNNGC	1 cut(s)	358
CciI	TCATGA	1 cut(s)	46
CfoI	GCGC	1 cut(s)	430
Cfr9I	CCCGGG	1 cut(s)	401
ClaI	ATCGAT	1 cut(s)	11
Csp6I	GTAC	1 cut(s)	294
CspCI	CAANNNNNGTGG	2 cut(s)	307, 342
CviAII	CATG	4 cut(s)	47, 119, 361, 385
CviJI	RGCY	1 cut(s)	42
CviKI_1	RGCY	1 cut(s)	42
CviQI	GTAC	1 cut(s)	294
DdeI	CTNAG	2 cut(s)	95, 226
DpnI	GATC	6 cut(s)	10, 14, 51, 165, 187, 289
DpnII	GATC	6 cut(s)	8, 12, 49, 163, 185, 287
DraI	TTTAAA	1 cut(s)	19
DrdI	GACNNNNNNGTC	1 cut(s)	263
DseDI	GACNNNNNNGTC	1 cut(s)	263
Eco32I	GATATC	1 cut(s)	80
Eco57I	CTGAAG	1 cut(s)	244
Eco88I	CYCGRG	1 cut(s)	401
EcoRV	GATATC	1 cut(s)	80
EcoT22I	ATGCAT	1 cut(s)	339
FaeI	CATG	4 cut(s)	50, 122, 364, 388
FaiI	YATR	8 cut(s)	48, 120, 299, 301, 303, 339, 362, 386
FatI	CATG	4 cut(s)	46, 118, 360, 384
Fnu4HI	GCNGC	1 cut(s)	197
Fsp4HI	GCNGC	1 cut(s)	197
FspBI	CTAG	1 cut(s)	215
GlaI	GCGC	1 cut(s)	429
GluI	GCNGC	1 cut(s)	197
GsaI	CCCAGC	1 cut(s)	309
HapII	CCGG	4 cut(s)	75, 139, 254, 402
HhaI	GCGC	1 cut(s)	430
Hin1II	CATG	4 cut(s)	50, 122, 364, 388
Hin6I	GCGC	1 cut(s)	428
HinP1I	GCGC	1 cut(s)	428
HinfI	GANTC	4 cut(s)	57, 155, 264, 439
HpaII	CCGG	4 cut(s)	75, 139, 254, 402
HphI	GGTGA	2 cut(s)	82, 400
Hpy166II	GTNNAC	1 cut(s)	116
Hpy188I	TCNGA	2 cut(s)	168, 263
Hpy188III	TCNNGA	2 cut(s)	47, 443
Hpy8I	GTNNAC	1 cut(s)	116
Hpy99I	CGWCG	1 cut(s)	57
HpyAV	CCTTC	1 cut(s)	19
HpyCH4III	ACNGT	2 cut(s)	352, 394
HpyCH4V	TGCA	5 cut(s)	116, 199, 251, 337, 356
HpyF10VI	GCNNNNNNNGC	2 cut(s)	248, 343
HpyF3I	CTNAG	2 cut(s)	95, 226
Hsp92II	CATG	4 cut(s)	50, 122, 364, 388
HspAI	GCGC	1 cut(s)	428
Kzo9I	GATC	6 cut(s)	8, 12, 49, 163, 185, 287
LmnI	GCTCC	1 cut(s)	39
LpnPI	CCDG	5 cut(s)	88, 152, 267, 291, 415
Lsp1109I	GCAGC	1 cut(s)	183
MaeI	CTAG	1 cut(s)	215
MaeIII	GTNAC	2 cut(s)	88, 388
MalI	GATC	6 cut(s)	10, 14, 51, 165, 187, 289
MboI	GATC	6 cut(s)	8, 12, 49, 163, 185, 287
MboII	GAAGA	1 cut(s)	180
MflI	RGATCY	2 cut(s)	163, 185
MhlI	GDGCHC	1 cut(s)	118
MluCI	AATT	2 cut(s)	200, 379
MlyI	GAGTC	3 cut(s)	66, 149, 273
MnlI	CCTC	1 cut(s)	325
Mph1103I	ATGCAT	1 cut(s)	339
MseI	TTAA	4 cut(s)	18, 204, 453, 466
MspI	CCGG	4 cut(s)	75, 139, 254, 402
MspR9I	CCNGG	3 cut(s)	140, 402, 403
Mva1269I	GAATGC	1 cut(s)	253
MvnI	CGCG	1 cut(s)	428
MwoI	GCNNNNNNNGC	2 cut(s)	248, 343
NciI	CCSGG	3 cut(s)	140, 402, 403
NdeII	GATC	6 cut(s)	8, 12, 49, 163, 185, 287
NlaIII	CATG	4 cut(s)	50, 122, 364, 388
NlaIV	GGNNCC	1 cut(s)	41
NmuCI	GTSAC	2 cut(s)	88, 388
NsiI	ATGCAT	1 cut(s)	339
NspI	RCATGY	1 cut(s)	364
PagI	TCATGA	1 cut(s)	46
PcsI	WCGNNNNNNNCGW	1 cut(s)	40
PctI	GAATGC	1 cut(s)	253
PfeI	GAWTC	1 cut(s)	439
PkrI	GCNGC	1 cut(s)	198
PleI	GAGTC	3 cut(s)	65, 149, 272
PpsI	GAGTC	3 cut(s)	65, 149, 272
PshBI	ATTAAT	1 cut(s)	453
PspFI	CCCAGC	1 cut(s)	305
PspN4I	GGNNCC	1 cut(s)	41
PsuI	RGATCY	2 cut(s)	163, 185
RsaI	GTAC	1 cut(s)	295
RsaNI	GTAC	1 cut(s)	294
SaqAI	TTAA	4 cut(s)	18, 204, 453, 466
SatI	GCNGC	1 cut(s)	197
Sau3AI	GATC	6 cut(s)	8, 12, 49, 163, 185, 287
SchI	GAGTC	3 cut(s)	66, 149, 273
ScrFI	CCNGG	3 cut(s)	140, 402, 403
SduI	GDGCHC	1 cut(s)	118
SmaI	CCCGGG	1 cut(s)	403
SmlI	CTYRAG	1 cut(s)	157
SmoI	CTYRAG	1 cut(s)	157
Sse9I	AATT	2 cut(s)	200, 379
SspMI	CTAG	1 cut(s)	215
StyD4I	CCNGG	3 cut(s)	138, 400, 401
TaaI	ACNGT	2 cut(s)	352, 394
TaqI	TCGA	4 cut(s)	11, 34, 55, 66
TasI	AATT	2 cut(s)	200, 379
TfiI	GAWTC	1 cut(s)	439
Tru1I	TTAA	4 cut(s)	18, 204, 453, 466
Tru9I	TTAA	4 cut(s)	18, 204, 453, 466
TscAI	CASTG	2 cut(s)	198, 399
TseFI	GTSAC	2 cut(s)	88, 388
TseI	GCWGC	1 cut(s)	196
Tsp45I	GTSAC	2 cut(s)	88, 388
TspDTI	ATGAA	3 cut(s)	135, 373, 409
TspMI	CCCGGG	1 cut(s)	401
TspRI	CASTG	2 cut(s)	198, 399
VneI	GTGCAC	1 cut(s)	114
VspI	ATTAAT	1 cut(s)	453
XceI	RCATGY	1 cut(s)	364
XmaI	CCCGGG	1 cut(s)	401
XspI	CTAG	1 cut(s)	215
Zsp2I	ATGCAT	1 cut(s)	339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.