Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001888

Physical Location & Seq

Genomic Coordinates Forward (+)

6213617 .. 6215932

Gene Structure 2316 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G14560.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGCAGCAGCCCTGTGTGATAGTGGGTTCGAAGTACTGCTCACCAAACCCTGTAGGTTTGGCGATCGTCCGTAAGGTGATGAAGATAACGGACGGTAACTTCGTGATAACGAGTGCGGACGGTAAGTTATTGTTCAAGGTGAAGGATCCTTTGTTTAGTCTTCACGGCAAGAGGATCTTGCTGGATTGTTCTGGAGCTAAGGTCTTAACTTTGAGAGGGAAGATGATGACCATGCATGACAGGTGGCAAGTGTTTAGAGGAGGGAGTACGGAGGAGGGTGCTCTACTATACACGGTGAAAAGATCGTCGATGATTCAGCTAGCCCCTAAACTTGAGGTGTTTTTGGCTAACAACGTAGAGGAGAAGATATGTGATTTCAAAGTCAAAGGGGCCTGGCTCGACGACTCTTGTGTTGTCTACGCCGGCGATTCTGACACCATTATTGCCCACATGTGCGGAAAGCAAACGATGCGAGGCTTTTTCTTCGGAAAGGACCATTTCTCCGTCACTGTTGATAAGAACGTTGATTATGCCTTCATTGCATCTCTCATTGTCATCCTTGTAGAAATAGAAAAAGCTGGTTTTATTACGAAAATGACAACACAAATGATAATAGGTTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009725 GO:0009751 GO:0010033 GO:0014070 GO:0042221 GO:0042493 GO:0043207 GO:0046677 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0098542 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOR

Protein Analysis

207

Amino Acids

22.99

Weight (kDa)

8.99

Isoelectric Point (pI)

26.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LOR	PF04525	80 - 247	8e-42	LURP-one-related

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001888)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33840 AT1G33840 AT2G14560 AT2G14560 AT2G14560 AT2G14560 AT3G11740 AT5G01750 AT5G01750
fragaria_vesca	FvH4_6g10350 FvH4_6g10360 FvH4_6g10360
malus_domestica	MD04G1169400.v1.1 MD12G1182900.v1.1
prunus_persica	Prupe.6G287400_v2.0.a1 Prupe.6G287500_v2.0.a1 Prupe.6G287900_v2.0.a1
pyrus_communis	pycom04g15000 pycom12g17170
rosa_chinensis	RchiOBHm_Chr3g0461171 RchiOBHm_Chr3g0461181 RchiOBHm_Chr3g0461261
rosa_laevigata	RLG00000024947 RLG00000024948
rosa_multiflora	Rmu_sc0009344.1_g000007 Rmu_sc0009344.1_g000008
rosa_roxburghii	Rroxscaffold_6G00418740 Rroxscaffold_6G00418760 Rroxscaffold_6G00418810 Rroxscaffold_6G00418820
rosa_rugosa	Rorug03G0048800 Rorug03G0048800 Rorug03G0048900 Rorug03G0049300
rosa_samantha	Rh3AG106000 Rh3AG106100 Rh3BG110300 Rh3BG110400 Rh3BG110800 Rh3CG111900 Rh3CG112000 Rh3DG112100 Rh3DG112200 Rh3DG112600
rosa_wichuraiana	Rw3G009090 Rw3G009130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	417
AciI	CCGC	2 cut(s)	116, 456
AclI	AACGTT	1 cut(s)	522
AclWI	GGATC	3 cut(s)	140, 153, 182
AfaI	GTAC	2 cut(s)	35, 268
AflIII	ACRYGT	1 cut(s)	450
AgsI	TTSAA	2 cut(s)	136, 379
AjnI	CCWGG	1 cut(s)	392
AluBI	AGCT	3 cut(s)	197, 319, 578
AluI	AGCT	3 cut(s)	197, 319, 578
Alw21I	GWGCWC	1 cut(s)	283
AlwI	GGATC	3 cut(s)	140, 153, 182
AoxI	GGCC	1 cut(s)	390
ApeKI	GCWGC	2 cut(s)	4, 7
ArsI	GACNNNNNNTTYG	2 cut(s)	83, 115
AspS9I	GGNCC	2 cut(s)	390, 493
AsuHPI	GGTGA	4 cut(s)	33, 88, 151, 307
AsuII	TTCGAA	1 cut(s)	29
AsuNHI	GCTAGC	1 cut(s)	319
AvaII	GGWCC	1 cut(s)	493
BamHI	GGATCC	1 cut(s)	145
BbsI	GAAGAC	1 cut(s)	152
Bbv12I	GWGCWC	1 cut(s)	283
BbvI	GCAGC	2 cut(s)	16, 19
BceAI	ACGGC	1 cut(s)	181
BciT130I	CCWGG	1 cut(s)	394
BfaI	CTAG	1 cut(s)	320
BfmI	CTRYAG	1 cut(s)	51
BisI	GCNGC	2 cut(s)	5, 8
BlsI	GCNGC	2 cut(s)	6, 9
BmcAI	AGTACT	1 cut(s)	35
Bme1390I	CCNGG	1 cut(s)	394
Bme18I	GGWCC	1 cut(s)	493
BmgT120I	GGNCC	2 cut(s)	390, 493
BmiI	GGNNCC	2 cut(s)	147, 391
BmrFI	CCNGG	1 cut(s)	394
BmsI	GCATC	2 cut(s)	459, 551
BmtI	GCTAGC	1 cut(s)	323
BpiI	GAAGAC	1 cut(s)	152
BpmI	CTGGAG	1 cut(s)	213
Bpu10I	CCTNAGC	1 cut(s)	198
Bpu14I	TTCGAA	1 cut(s)	29
BpuEI	CTTGAG	1 cut(s)	353
BsaXI	ACNNNNNCTCC	4 cut(s)	186, 216, 485, 515
Bse118I	RCCGGY	1 cut(s)	422
Bse3DI	GCAATG	1 cut(s)	537
BseBI	CCWGG	1 cut(s)	394
BseGI	GGATG	1 cut(s)	555
BseMI	GCAATG	1 cut(s)	537
BseRI	GAGGAG	3 cut(s)	273, 287, 374
BseXI	GCAGC	2 cut(s)	16, 19
Bsh1285I	CGRYCG	1 cut(s)	66
BshFI	GGCC	1 cut(s)	392
BsiEI	CGRYCG	1 cut(s)	66
BsiHKAI	GWGCWC	1 cut(s)	283
BsiSI	CCGG	1 cut(s)	423
BsnI	GGCC	1 cut(s)	392
Bsp119I	TTCGAA	1 cut(s)	29
Bsp1286I	GDGCHC	1 cut(s)	283
Bsp143I	GATC	4 cut(s)	63, 145, 174, 302
BspACI	CCGC	2 cut(s)	116, 456
BspANI	GGCC	1 cut(s)	392
BspLI	GGNNCC	2 cut(s)	147, 391
BspOI	GCTAGC	1 cut(s)	323
BspPI	GGATC	3 cut(s)	140, 153, 182
BspT104I	TTCGAA	1 cut(s)	29
BsrDI	GCAATG	1 cut(s)	537
BsrFI	RCCGGY	1 cut(s)	422
BssAI	RCCGGY	1 cut(s)	422
BssMI	GATC	4 cut(s)	63, 145, 174, 302
Bst2UI	CCWGG	1 cut(s)	394
Bst4CI	ACNGT	4 cut(s)	95, 122, 295, 511
BstAPI	GCANNNNNTGC	1 cut(s)	469
BstBI	TTCGAA	1 cut(s)	29
BstC8I	GCNNGC	2 cut(s)	321, 424
BstDEI	CTNAG	1 cut(s)	198
BstF5I	GGATG	1 cut(s)	555
BstKTI	GATC	4 cut(s)	66, 148, 177, 305
BstMBI	GATC	4 cut(s)	63, 145, 174, 302
BstMCI	CGRYCG	1 cut(s)	66
BstMWI	GCNNNNNNNGC	2 cut(s)	469, 539
BstNI	CCWGG	1 cut(s)	394
BstNSI	RCATGY	1 cut(s)	454
BstSCI	CCNGG	1 cut(s)	392
BstSFI	CTRYAG	1 cut(s)	51
BstV1I	GCAGC	2 cut(s)	16, 19
BstV2I	GAAGAC	1 cut(s)	152
BstX2I	RGATCY	2 cut(s)	145, 174
BstYI	RGATCY	2 cut(s)	145, 174
BsuRI	GGCC	1 cut(s)	392
BtsCI	GGATG	1 cut(s)	555
BtsIMutI	CAGTG	1 cut(s)	507
Cac8I	GCNNGC	2 cut(s)	321, 424
Cfr10I	RCCGGY	1 cut(s)	422
Cfr13I	GGNCC	2 cut(s)	390, 493
Csp6I	GTAC	2 cut(s)	34, 267
CviAII	CATG	3 cut(s)	232, 236, 451
CviJI	RGCY	9 cut(s)	10, 197, 319, 323, 347, 392, 397, 477, 578
CviKI_1	RGCY	9 cut(s)	10, 197, 319, 323, 347, 392, 397, 477, 578
CviQI	GTAC	2 cut(s)	34, 267
DdeI	CTNAG	1 cut(s)	198
DpnI	GATC	4 cut(s)	65, 147, 176, 304
DpnII	GATC	4 cut(s)	63, 145, 174, 302
Eco47I	GGWCC	1 cut(s)	493
EcoO109I	RGGNCCY	1 cut(s)	390
EcoRII	CCWGG	1 cut(s)	392
EcoT22I	ATGCAT	1 cut(s)	237
FaeI	CATG	3 cut(s)	235, 239, 454
FaiI	YATR	6 cut(s)	233, 237, 289, 370, 452, 531
FalI	AAGNNNNNCTT	2 cut(s)	161, 193
FatI	CATG	3 cut(s)	231, 235, 450
FblI	GTMKAC	1 cut(s)	417
Fnu4HI	GCNGC	2 cut(s)	5, 8
FokI	GGATG	1 cut(s)	542
Fsp4HI	GCNGC	2 cut(s)	5, 8
FspBI	CTAG	1 cut(s)	320
GluI	GCNGC	2 cut(s)	5, 8
GsuI	CTGGAG	1 cut(s)	213
HaeIII	GGCC	1 cut(s)	392
HapII	CCGG	1 cut(s)	423
Hin1II	CATG	3 cut(s)	235, 239, 454
HinfI	GANTC	3 cut(s)	313, 404, 428
HpaII	CCGG	1 cut(s)	423
HphI	GGTGA	4 cut(s)	33, 88, 151, 307
Hpy166II	GTNNAC	1 cut(s)	418
Hpy188I	TCNGA	2 cut(s)	433, 488
Hpy188III	TCNNGA	2 cut(s)	103, 192
Hpy8I	GTNNAC	1 cut(s)	418
Hpy99I	CGWCG	2 cut(s)	310, 404
HpyAV	CCTTC	2 cut(s)	136, 544
HpyCH4III	ACNGT	4 cut(s)	95, 122, 295, 511
HpyCH4IV	ACGT	2 cut(s)	354, 522
HpyCH4V	TGCA	3 cut(s)	4, 235, 542
HpyF10VI	GCNNNNNNNGC	2 cut(s)	469, 539
HpyF3I	CTNAG	1 cut(s)	198
HpySE526I	ACGT	2 cut(s)	354, 522
Hsp92II	CATG	3 cut(s)	235, 239, 454
KroI	GCCGGC	1 cut(s)	422
KroNI	GCCGGC	1 cut(s)	424
Kzo9I	GATC	4 cut(s)	63, 145, 174, 302
LmnI	GCTCC	1 cut(s)	194
LpnPI	CCDG	9 cut(s)	25, 63, 167, 177, 226, 379, 406, 436, 564
Lsp1109I	GCAGC	2 cut(s)	16, 19
LweI	GCATC	2 cut(s)	459, 551
MaeI	CTAG	1 cut(s)	320
MaeII	ACGT	2 cut(s)	354, 522
MaeIII	GTNAC	2 cut(s)	95, 505
MalI	GATC	4 cut(s)	65, 147, 176, 304
MboI	GATC	4 cut(s)	63, 145, 174, 302
MboII	GAAGA	5 cut(s)	94, 152, 232, 376, 475
MflI	RGATCY	2 cut(s)	145, 174
MhlI	GDGCHC	1 cut(s)	283
MlyI	GAGTC	1 cut(s)	398
MnlI	CCTC	9 cut(s)	165, 209, 251, 254, 265, 268, 328, 352, 467
Mph1103I	ATGCAT	1 cut(s)	237
MreI	CGCCGGCG	1 cut(s)	422
MroNI	GCCGGC	1 cut(s)	422
MseI	TTAA	1 cut(s)	206
MspI	CCGG	1 cut(s)	423
MspR9I	CCNGG	1 cut(s)	394
MvaI	CCWGG	1 cut(s)	394
MwoI	GCNNNNNNNGC	2 cut(s)	469, 539
NaeI	GCCGGC	1 cut(s)	424
NdeII	GATC	4 cut(s)	63, 145, 174, 302
NgoMIV	GCCGGC	1 cut(s)	422
NheI	GCTAGC	1 cut(s)	319
NlaIII	CATG	3 cut(s)	235, 239, 454
NlaIV	GGNNCC	2 cut(s)	147, 391
NmuCI	GTSAC	1 cut(s)	505
NsiI	ATGCAT	1 cut(s)	237
NspI	RCATGY	1 cut(s)	454
NspV	TTCGAA	1 cut(s)	29
PciI	ACATGT	1 cut(s)	450
PcsI	WCGNNNNNNNCGW	1 cut(s)	99
PdiI	GCCGGC	1 cut(s)	424
PfeI	GAWTC	2 cut(s)	313, 428
PkrI	GCNGC	2 cut(s)	6, 9
Ple19I	CGATCG	1 cut(s)	66
PleI	GAGTC	1 cut(s)	398
PpsI	GAGTC	1 cut(s)	398
PscI	ACATGT	1 cut(s)	450
Psp1406I	AACGTT	1 cut(s)	522
Psp6I	CCWGG	1 cut(s)	392
PspGI	CCWGG	1 cut(s)	392
PspN4I	GGNNCC	2 cut(s)	147, 391
PspPI	GGNCC	2 cut(s)	390, 493
PsuI	RGATCY	2 cut(s)	145, 174
PvuI	CGATCG	1 cut(s)	66
RsaI	GTAC	2 cut(s)	35, 268
RsaNI	GTAC	2 cut(s)	34, 267
SaqAI	TTAA	1 cut(s)	206
SatI	GCNGC	2 cut(s)	5, 8
Sau3AI	GATC	4 cut(s)	63, 145, 174, 302
Sau96I	GGNCC	2 cut(s)	390, 493
ScaI	AGTACT	1 cut(s)	35
SchI	GAGTC	1 cut(s)	398
ScrFI	CCNGG	1 cut(s)	394
SduI	GDGCHC	1 cut(s)	283
SfaNI	GCATC	2 cut(s)	459, 551
SfcI	CTRYAG	1 cut(s)	51
SfuI	TTCGAA	1 cut(s)	29
SgrAI	CRCCGGYG	1 cut(s)	422
SinI	GGWCC	1 cut(s)	493
SmlI	CTYRAG	1 cut(s)	332
SmoI	CTYRAG	1 cut(s)	332
SsiI	CCGC	2 cut(s)	116, 456
SspMI	CTAG	1 cut(s)	320
StyD4I	CCNGG	1 cut(s)	392
TaaI	ACNGT	4 cut(s)	95, 122, 295, 511
TaiI	ACGT	2 cut(s)	357, 525
TaqI	TCGA	3 cut(s)	29, 308, 399
TatI	WGTACW	1 cut(s)	33
TfiI	GAWTC	2 cut(s)	313, 428
Tru1I	TTAA	1 cut(s)	206
Tru9I	TTAA	1 cut(s)	206
TscAI	CASTG	1 cut(s)	514
TseFI	GTSAC	1 cut(s)	505
TseI	GCWGC	2 cut(s)	4, 7
Tsp45I	GTSAC	1 cut(s)	505
TspDTI	ATGAA	2 cut(s)	95, 526
TspGWI	ACGGA	4 cut(s)	59, 104, 284, 493
TspRI	CASTG	1 cut(s)	514
VpaK11BI	GGWCC	1 cut(s)	493
XceI	RCATGY	1 cut(s)	454
XmiI	GTMKAC	1 cut(s)	417
XspI	CTAG	1 cut(s)	320
ZrmI	AGTACT	1 cut(s)	35
Zsp2I	ATGCAT	1 cut(s)	237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.