Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0001888

Physical Location & Seq

Genomic Coordinates Forward (+)

26585506 .. 26586904

Gene Structure 1399 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G287500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGAAACAACCAGAAGCTAGCGCACCATCGATAGCCTACGCTAATCCGGCATCATTAGAGTACGCTGATCCCGGGACAATAGCCTATGCTCATCCCGCCGTTGCGATCGTCAGCCCTCACTTCTGCAGCCCCCAACCTGTAGATCTTGCAATTGTTAGAAAAGTTTTGACCATAACCGATGGCAACTTTGTGGTCTCTGATATCAATGGCAACGTCATTTTTAAAGTCAAGGGAGCTCATTTAAGCTTTCGTGACCACAGGATCTTACTTGACACAGCTGGTTATCCCATCATCACTCTAAGAAAGAAGTTCGTAAGTGCACATGATAGATGGCAAGTTTTTAGAGGGGATAGCACAGAAACAAGGGATCTGATTTTTAGTGCTAAGAGGTCCTCGATGTTCCAATTTAAGACCAAATTGGATATTTTCTTAGCAAATAACATAGCCGAGAAAGCACCTGACTTCAGGATCAAAGGAAGTTGGTTTGAACGATCTTGTGTCATATATGGTGGGAACTCTTCCACCATCGTTGCCCAAATGCATAAGAAGCGGACAGTTCAAAGCGTGTTGTTTGGAAAGGACAATTTCATGGTGACAGTGTACCCAGGCATTGACTATGCATTCATCATCGCGCTTATTGTGATTCTTGATGAGATTAATGAAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009725 GO:0009751 GO:0010033 GO:0014070 GO:0042221 GO:0042493 GO:0043207 GO:0046677 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0098542 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOR

Protein Analysis

223

Amino Acids

24.76

Weight (kDa)

9.02

Isoelectric Point (pI)

37.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001888)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33840 AT1G33840 AT2G14560 AT2G14560 AT2G14560 AT2G14560 AT3G11740 AT5G01750 AT5G01750
fragaria_vesca	FvH4_6g10350 FvH4_6g10360 FvH4_6g10360
malus_domestica	MD04G1169400.v1.1 MD12G1182900.v1.1
prunus_persica	Prupe.6G287400_v2.0.a1 Prupe.6G287500_v2.0.a1 Prupe.6G287900_v2.0.a1
pyrus_communis	pycom04g15000 pycom12g17170
rosa_chinensis	RchiOBHm_Chr3g0461171 RchiOBHm_Chr3g0461181 RchiOBHm_Chr3g0461261
rosa_laevigata	RLG00000024947 RLG00000024948
rosa_multiflora	Rmu_sc0009344.1_g000007 Rmu_sc0009344.1_g000008
rosa_roxburghii	Rroxscaffold_6G00418740 Rroxscaffold_6G00418760 Rroxscaffold_6G00418810 Rroxscaffold_6G00418820
rosa_rugosa	Rorug03G0048800 Rorug03G0048800 Rorug03G0048900 Rorug03G0049300
rosa_samantha	Rh3AG106000 Rh3AG106100 Rh3BG110300 Rh3BG110400 Rh3BG110800 Rh3CG111900 Rh3CG112000 Rh3DG112100 Rh3DG112200 Rh3DG112600
rosa_wichuraiana	Rw3G009090 Rw3G009130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	632
AciI	CCGC	2 cut(s)	96, 550
AclWI	GGATC	4 cut(s)	62, 269, 375, 476
AcuI	CTGAAG	1 cut(s)	448
AfaI	GTAC	2 cut(s)	62, 602
AgsI	TTSAA	2 cut(s)	488, 560
AjnI	CCWGG	1 cut(s)	604
AluBI	AGCT	4 cut(s)	17, 236, 246, 278
AluI	AGCT	4 cut(s)	17, 236, 246, 278
Alw21I	GWGCWC	2 cut(s)	238, 322
Alw26I	GTCTC	1 cut(s)	199
Alw44I	GTGCAC	1 cut(s)	318
AlwI	GGATC	4 cut(s)	62, 269, 375, 476
Ama87I	CYCGRG	1 cut(s)	71
ApaLI	GTGCAC	1 cut(s)	318
ApeKI	GCWGC	1 cut(s)	126
AseI	ATTAAT	1 cut(s)	657
AspLEI	GCGC	2 cut(s)	23, 634
AspS9I	GGNCC	1 cut(s)	390
AsuC2I	CCSGG	2 cut(s)	72, 73
AsuHPI	GGTGA	1 cut(s)	604
AsuNHI	GCTAGC	1 cut(s)	17
AvaI	CYCGRG	1 cut(s)	71
AvaII	GGWCC	1 cut(s)	390
BaeGI	GKGCMC	1 cut(s)	322
BanII	GRGCYC	1 cut(s)	238
Bbv12I	GWGCWC	2 cut(s)	238, 322
BbvI	GCAGC	1 cut(s)	138
BccI	CCATC	5 cut(s)	34, 173, 296, 324, 533
BceAI	ACGGC	1 cut(s)	83
BciT130I	CCWGG	1 cut(s)	606
BcnI	CCSGG	2 cut(s)	72, 73
BcoDI	GTCTC	1 cut(s)	199
BfaI	CTAG	1 cut(s)	18
BfmI	CTRYAG	2 cut(s)	124, 138
BglII	AGATCT	1 cut(s)	142
BisI	GCNGC	1 cut(s)	127
BlsI	GCNGC	1 cut(s)	128
Bme1390I	CCNGG	3 cut(s)	72, 73, 606
Bme18I	GGWCC	1 cut(s)	390
BmeT110I	CYCGRG	1 cut(s)	71
BmgT120I	GGNCC	1 cut(s)	390
BmrFI	CCNGG	3 cut(s)	72, 73, 606
BmsI	GCATC	1 cut(s)	59
BmtI	GCTAGC	1 cut(s)	21
BpuMI	CCSGG	2 cut(s)	72, 73
Bsa29I	ATCGAT	1 cut(s)	29
BsaI	GGTCTC	1 cut(s)	199
BsaJI	CCNNGG	2 cut(s)	71, 604
BseBI	CCWGG	1 cut(s)	606
BseCI	ATCGAT	1 cut(s)	29
BseDI	CCNNGG	2 cut(s)	71, 604
BseGI	GGATG	1 cut(s)	91
BseSI	GKGCMC	1 cut(s)	322
BseXI	GCAGC	1 cut(s)	138
Bsh1236I	CGCG	1 cut(s)	632
Bsh1285I	CGRYCG	1 cut(s)	108
BshVI	ATCGAT	1 cut(s)	29
BsiEI	CGRYCG	1 cut(s)	108
BsiHKAI	GWGCWC	2 cut(s)	238, 322
BsiHKCI	CYCGRG	1 cut(s)	71
BsiSI	CCGG	2 cut(s)	47, 72
BslFI	GGGAC	1 cut(s)	88
BsmAI	GTCTC	1 cut(s)	199
BsmFI	GGGAC	1 cut(s)	88
BsmI	GAATGC	1 cut(s)	620
Bso31I	GGTCTC	1 cut(s)	199
BsoBI	CYCGRG	1 cut(s)	71
Bsp1286I	GDGCHC	2 cut(s)	238, 322
Bsp143I	GATC	7 cut(s)	67, 105, 142, 261, 367, 468, 491
BspACI	CCGC	2 cut(s)	96, 550
BspDI	ATCGAT	1 cut(s)	29
BspFNI	CGCG	1 cut(s)	632
BspMAI	CTGCAG	1 cut(s)	128
BspOI	GCTAGC	1 cut(s)	21
BspPI	GGATC	4 cut(s)	62, 269, 375, 476
BspTNI	GGTCTC	1 cut(s)	199
BssECI	CCNNGG	2 cut(s)	71, 604
BssMI	GATC	7 cut(s)	67, 105, 142, 261, 367, 468, 491
Bst2UI	CCWGG	1 cut(s)	606
Bst4CI	ACNGT	2 cut(s)	556, 598
Bst6I	CTCTTC	1 cut(s)	523
BstC8I	GCNNGC	1 cut(s)	19
BstDEI	CTNAG	3 cut(s)	299, 384, 430
BstF5I	GGATG	1 cut(s)	91
BstFNI	CGCG	1 cut(s)	632
BstHHI	GCGC	2 cut(s)	23, 634
BstKTI	GATC	7 cut(s)	70, 108, 145, 264, 370, 471, 494
BstMAI	GTCTC	1 cut(s)	199
BstMBI	GATC	7 cut(s)	67, 105, 142, 261, 367, 468, 491
BstMCI	CGRYCG	1 cut(s)	108
BstMWI	GCNNNNNNNGC	4 cut(s)	47, 95, 452, 547
BstNI	CCWGG	1 cut(s)	606
BstSCI	CCNGG	3 cut(s)	70, 71, 604
BstSFI	CTRYAG	2 cut(s)	124, 138
BstSLI	GKGCMC	1 cut(s)	322
BstUI	CGCG	1 cut(s)	632
BstV1I	GCAGC	1 cut(s)	138
BstX2I	RGATCY	3 cut(s)	142, 261, 367
BstYI	RGATCY	3 cut(s)	142, 261, 367
Bsu15I	ATCGAT	1 cut(s)	29
BsuTUI	ATCGAT	1 cut(s)	29
BtgZI	GCGATG	1 cut(s)	613
BtsCI	GGATG	1 cut(s)	91
BtsIMutI	CAGTG	1 cut(s)	603
Cac8I	GCNNGC	1 cut(s)	19
CfoI	GCGC	2 cut(s)	23, 634
Cfr13I	GGNCC	1 cut(s)	390
Cfr9I	CCCGGG	1 cut(s)	71
ClaI	ATCGAT	1 cut(s)	29
Csp6I	GTAC	2 cut(s)	61, 601
CspCI	CAANNNNNGTGG	2 cut(s)	511, 546
CviAII	CATG	2 cut(s)	323, 589
CviJI	RGCY	9 cut(s)	17, 35, 83, 114, 129, 236, 246, 278, 446
CviKI_1	RGCY	9 cut(s)	17, 35, 83, 114, 129, 236, 246, 278, 446
CviQI	GTAC	2 cut(s)	61, 601
DdeI	CTNAG	3 cut(s)	299, 384, 430
DpnI	GATC	7 cut(s)	69, 107, 144, 263, 369, 470, 493
DpnII	GATC	7 cut(s)	67, 105, 142, 261, 367, 468, 491
DraI	TTTAAA	1 cut(s)	223
Eam1104I	CTCTTC	1 cut(s)	523
EarI	CTCTTC	1 cut(s)	523
Ecl136II	GAGCTC	1 cut(s)	236
Eco24I	GRGCYC	1 cut(s)	238
Eco31I	GGTCTC	1 cut(s)	199
Eco32I	GATATC	1 cut(s)	202
Eco47I	GGWCC	1 cut(s)	390
Eco53kI	GAGCTC	1 cut(s)	236
Eco57I	CTGAAG	1 cut(s)	448
Eco88I	CYCGRG	1 cut(s)	71
EcoICRI	GAGCTC	1 cut(s)	236
EcoO109I	RGGNCCY	1 cut(s)	390
EcoRII	CCWGG	1 cut(s)	604
EcoRV	GATATC	1 cut(s)	202
EcoT22I	ATGCAT	2 cut(s)	543, 622
EcoT38I	GRGCYC	1 cut(s)	238
FaeI	CATG	2 cut(s)	326, 592
FaqI	GGGAC	1 cut(s)	88
FatI	CATG	2 cut(s)	322, 588
FauI	CCCGC	1 cut(s)	103
Fnu4HI	GCNGC	1 cut(s)	127
FokI	GGATG	1 cut(s)	78
FriOI	GRGCYC	1 cut(s)	238
Fsp4HI	GCNGC	1 cut(s)	127
FspBI	CTAG	1 cut(s)	18
GlaI	GCGC	2 cut(s)	22, 633
GluI	GCNGC	1 cut(s)	127
HapII	CCGG	2 cut(s)	47, 72
HhaI	GCGC	2 cut(s)	23, 634
Hin1II	CATG	2 cut(s)	326, 592
Hin6I	GCGC	2 cut(s)	21, 632
HinP1I	GCGC	2 cut(s)	21, 632
HindIII	AAGCTT	1 cut(s)	244
HinfI	GANTC	1 cut(s)	643
HpaII	CCGG	2 cut(s)	47, 72
HphI	GGTGA	1 cut(s)	604
Hpy166II	GTNNAC	2 cut(s)	320, 601
Hpy188I	TCNGA	2 cut(s)	199, 372
Hpy188III	TCNNGA	3 cut(s)	251, 466, 647
Hpy8I	GTNNAC	2 cut(s)	320, 601
HpyCH4III	ACNGT	2 cut(s)	556, 598
HpyCH4IV	ACGT	1 cut(s)	213
HpyCH4V	TGCA	5 cut(s)	126, 149, 320, 541, 620
HpyF10VI	GCNNNNNNNGC	4 cut(s)	47, 95, 452, 547
HpyF3I	CTNAG	3 cut(s)	299, 384, 430
HpySE526I	ACGT	1 cut(s)	213
Hsp92II	CATG	2 cut(s)	326, 592
HspAI	GCGC	2 cut(s)	21, 632
Kzo9I	GATC	7 cut(s)	67, 105, 142, 261, 367, 468, 491
LmnI	GCTCC	1 cut(s)	233
Lsp1109I	GCAGC	1 cut(s)	138
LweI	GCATC	1 cut(s)	59
MaeI	CTAG	1 cut(s)	18
MaeII	ACGT	1 cut(s)	213
MaeIII	GTNAC	2 cut(s)	251, 592
MalI	GATC	7 cut(s)	69, 107, 144, 263, 369, 470, 493
MboI	GATC	7 cut(s)	67, 105, 142, 261, 367, 468, 491
MboII	GAAGA	1 cut(s)	510
MfeI	CAATTG	1 cut(s)	150
MflI	RGATCY	3 cut(s)	142, 261, 367
MhlI	GDGCHC	2 cut(s)	238, 322
MluCI	AATT	5 cut(s)	150, 404, 416, 583, 664
MnlI	CCTC	4 cut(s)	126, 338, 381, 403
Mph1103I	ATGCAT	2 cut(s)	543, 622
MseI	TTAA	5 cut(s)	222, 242, 408, 657, 667
MspA1I	CMGCKG	1 cut(s)	278
MspI	CCGG	2 cut(s)	47, 72
MspR9I	CCNGG	3 cut(s)	72, 73, 606
MunI	CAATTG	1 cut(s)	150
Mva1269I	GAATGC	1 cut(s)	620
MvaI	CCWGG	1 cut(s)	606
MvnI	CGCG	1 cut(s)	632
MwoI	GCNNNNNNNGC	4 cut(s)	47, 95, 452, 547
NciI	CCSGG	2 cut(s)	72, 73
NdeII	GATC	7 cut(s)	67, 105, 142, 261, 367, 468, 491
NheI	GCTAGC	1 cut(s)	17
NlaIII	CATG	2 cut(s)	326, 592
NmeAIII	GCCGAG	1 cut(s)	472
NmuCI	GTSAC	2 cut(s)	251, 592
NsiI	ATGCAT	2 cut(s)	543, 622
PctI	GAATGC	1 cut(s)	620
PfeI	GAWTC	1 cut(s)	643
PkrI	GCNGC	1 cut(s)	128
Ple19I	CGATCG	1 cut(s)	108
PpuMI	RGGWCCY	1 cut(s)	390
PshBI	ATTAAT	1 cut(s)	657
Psp124BI	GAGCTC	1 cut(s)	238
Psp5II	RGGWCCY	1 cut(s)	390
Psp6I	CCWGG	1 cut(s)	604
PspGI	CCWGG	1 cut(s)	604
PspPI	GGNCC	1 cut(s)	390
PspPPI	RGGWCCY	1 cut(s)	390
PstI	CTGCAG	1 cut(s)	128
PsuI	RGATCY	3 cut(s)	142, 261, 367
PvuI	CGATCG	1 cut(s)	108
PvuII	CAGCTG	1 cut(s)	278
RsaI	GTAC	2 cut(s)	62, 602
RsaNI	GTAC	2 cut(s)	61, 601
SacI	GAGCTC	1 cut(s)	238
SaqAI	TTAA	5 cut(s)	222, 242, 408, 657, 667
SatI	GCNGC	1 cut(s)	127
Sau3AI	GATC	7 cut(s)	67, 105, 142, 261, 367, 468, 491
Sau96I	GGNCC	1 cut(s)	390
ScrFI	CCNGG	3 cut(s)	72, 73, 606
SduI	GDGCHC	2 cut(s)	238, 322
SetI	ASST	8 cut(s)	19, 139, 216, 238, 248, 280, 392, 460
SfaNI	GCATC	1 cut(s)	59
SfcI	CTRYAG	2 cut(s)	124, 138
SinI	GGWCC	1 cut(s)	390
SmaI	CCCGGG	1 cut(s)	73
Sse9I	AATT	5 cut(s)	150, 404, 416, 583, 664
SsiI	CCGC	2 cut(s)	96, 550
SspMI	CTAG	1 cut(s)	18
SstI	GAGCTC	1 cut(s)	238
StyD4I	CCNGG	3 cut(s)	70, 71, 604
TaaI	ACNGT	2 cut(s)	556, 598
TaiI	ACGT	1 cut(s)	216
TaqI	TCGA	2 cut(s)	29, 395
TasI	AATT	5 cut(s)	150, 404, 416, 583, 664
TfiI	GAWTC	1 cut(s)	643
Tru1I	TTAA	5 cut(s)	222, 242, 408, 657, 667
Tru9I	TTAA	5 cut(s)	222, 242, 408, 657, 667
TscAI	CASTG	1 cut(s)	603
TseFI	GTSAC	2 cut(s)	251, 592
TseI	GCWGC	1 cut(s)	126
Tsp45I	GTSAC	2 cut(s)	251, 592
TspDTI	ATGAA	3 cut(s)	17, 577, 613
TspMI	CCCGGG	1 cut(s)	71
TspRI	CASTG	1 cut(s)	603
VneI	GTGCAC	1 cut(s)	318
VpaK11BI	GGWCC	1 cut(s)	390
VspI	ATTAAT	1 cut(s)	657
XmaI	CCCGGG	1 cut(s)	71
XspI	CTAG	1 cut(s)	18
Zsp2I	ATGCAT	2 cut(s)	543, 622

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.