Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0001888

Physical Location & Seq

Genomic Coordinates Reverse (-)

26612591 .. 26613356

Gene Structure 766 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G287900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGAATGCTATTAGAATTGTAAGAAAAGGCATGCTCTCCTTCACTGTAGGCAACCTTGTAGTCACTCGCATCGATGTCAATATCATCTTCAAAGTGGAACATAAACACTCTCACTCCATCGGGCGTCGACTCTTAATTGACCCTGCTGGAAATCCCATTCTCACTCTACCTCGATCAAATAACACCACTGAGAATGCACGTGACTTCAAAATCAAAGGAAGTTGGCTCCAACGATCTTGCGTCATATATGCTGGGAAGTCTTCTACCATCATTGCCCAAATGCATAAGAAGCAGACTGCTAACTTGTTTGCCAATGATACTTTCATAGTGACAATTTCTCCTGGTATTGATTATGCATTCATAGTTGCGCTTATTGTGATTCTTGATGCAATTAACCTTGATAATGGCGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009725 GO:0009751 GO:0010033 GO:0014070 GO:0042221 GO:0042493 GO:0043207 GO:0046677 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0098542 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOR

Protein Analysis

138

Amino Acids

15.19

Weight (kDa)

9.84

Isoelectric Point (pI)

37.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001888)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33840 AT1G33840 AT2G14560 AT2G14560 AT2G14560 AT2G14560 AT3G11740 AT5G01750 AT5G01750
fragaria_vesca	FvH4_6g10350 FvH4_6g10360 FvH4_6g10360
malus_domestica	MD04G1169400.v1.1 MD12G1182900.v1.1
prunus_persica	Prupe.6G287400_v2.0.a1 Prupe.6G287500_v2.0.a1 Prupe.6G287900_v2.0.a1
pyrus_communis	pycom04g15000 pycom12g17170
rosa_chinensis	RchiOBHm_Chr3g0461171 RchiOBHm_Chr3g0461181 RchiOBHm_Chr3g0461261
rosa_laevigata	RLG00000024947 RLG00000024948
rosa_multiflora	Rmu_sc0009344.1_g000007 Rmu_sc0009344.1_g000008
rosa_roxburghii	Rroxscaffold_6G00418740 Rroxscaffold_6G00418760 Rroxscaffold_6G00418810 Rroxscaffold_6G00418820
rosa_rugosa	Rorug03G0048800 Rorug03G0048800 Rorug03G0048900 Rorug03G0049300
rosa_samantha	Rh3AG106000 Rh3AG106100 Rh3BG110300 Rh3BG110400 Rh3BG110800 Rh3CG111900 Rh3CG112000 Rh3DG112100 Rh3DG112200 Rh3DG112600
rosa_wichuraiana	Rw3G009090 Rw3G009130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	127
AcvI	CACGTG	1 cut(s)	200
AcyI	GRCGYC	1 cut(s)	124
AgsI	TTSAA	2 cut(s)	91, 208
AjnI	CCWGG	1 cut(s)	340
AjuI	GAANNNNNNNTTGG	2 cut(s)	305, 337
AspLEI	GCGC	1 cut(s)	370
BbrPI	CACGTG	1 cut(s)	200
BbsI	GAAGAC	1 cut(s)	252
BccI	CCATC	2 cut(s)	125, 275
BciT130I	CCWGG	1 cut(s)	342
BfmI	CTRYAG	1 cut(s)	45
Bme1390I	CCNGG	1 cut(s)	342
BmiI	GGNNCC	1 cut(s)	227
BmrFI	CCNGG	1 cut(s)	342
BmsI	GCATC	2 cut(s)	78, 376
BpiI	GAAGAC	1 cut(s)	252
Bsa29I	ATCGAT	1 cut(s)	72
BsaAI	YACGTR	1 cut(s)	200
BsaHI	GRCGYC	1 cut(s)	124
BsaXI	ACNNNNNCTCC	4 cut(s)	98, 128, 322, 352
Bse3DI	GCAATG	1 cut(s)	270
BseBI	CCWGG	1 cut(s)	342
BseCI	ATCGAT	1 cut(s)	72
BseMI	GCAATG	1 cut(s)	270
BseMII	CTCAG	1 cut(s)	180
BseYI	CCCAGC	1 cut(s)	251
BshVI	ATCGAT	1 cut(s)	72
BsmI	GAATGC	3 cut(s)	10, 199, 356
Bsp143I	GATC	2 cut(s)	173, 233
BspCNI	CTCAG	1 cut(s)	181
BspDI	ATCGAT	1 cut(s)	72
BspLI	GGNNCC	1 cut(s)	227
BsrDI	GCAATG	1 cut(s)	270
BssMI	GATC	2 cut(s)	173, 233
BssNI	GRCGYC	1 cut(s)	124
Bst2UI	CCWGG	1 cut(s)	342
Bst4CI	ACNGT	1 cut(s)	46
BstACI	GRCGYC	1 cut(s)	124
BstBAI	YACGTR	1 cut(s)	200
BstC8I	GCNNGC	1 cut(s)	32
BstDEI	CTNAG	1 cut(s)	189
BstHHI	GCGC	1 cut(s)	370
BstKTI	GATC	2 cut(s)	176, 236
BstMBI	GATC	2 cut(s)	173, 233
BstMWI	GCNNNNNNNGC	1 cut(s)	289
BstNI	CCWGG	1 cut(s)	342
BstNSI	RCATGY	1 cut(s)	34
BstSCI	CCNGG	1 cut(s)	340
BstSFI	CTRYAG	1 cut(s)	45
BstV2I	GAAGAC	1 cut(s)	252
Bsu15I	ATCGAT	1 cut(s)	72
BsuTUI	ATCGAT	1 cut(s)	72
BtsIMutI	CAGTG	2 cut(s)	42, 186
Cac8I	GCNNGC	1 cut(s)	32
CfoI	GCGC	1 cut(s)	370
ClaI	ATCGAT	1 cut(s)	72
CseI	GACGC	2 cut(s)	113, 229
CviAII	CATG	1 cut(s)	31
CviJI	RGCY	1 cut(s)	226
CviKI_1	RGCY	1 cut(s)	226
DdeI	CTNAG	1 cut(s)	189
DpnI	GATC	2 cut(s)	175, 235
DpnII	GATC	2 cut(s)	173, 233
Eco72I	CACGTG	1 cut(s)	200
EcoRII	CCWGG	1 cut(s)	340
EcoT22I	ATGCAT	2 cut(s)	285, 358
FaeI	CATG	1 cut(s)	34
FaiI	YATR	9 cut(s)	32, 102, 245, 247, 249, 285, 326, 354, 362
FatI	CATG	1 cut(s)	30
FblI	GTMKAC	1 cut(s)	127
GlaI	GCGC	1 cut(s)	369
GsaI	CCCAGC	1 cut(s)	255
HgaI	GACGC	2 cut(s)	113, 229
HhaI	GCGC	1 cut(s)	370
Hin1I	GRCGYC	1 cut(s)	124
Hin1II	CATG	1 cut(s)	34
Hin6I	GCGC	1 cut(s)	368
HinP1I	GCGC	1 cut(s)	368
HincII	GTYRAC	1 cut(s)	128
HindII	GTYRAC	1 cut(s)	128
HinfI	GANTC	2 cut(s)	129, 379
Hpy166II	GTNNAC	1 cut(s)	128
Hpy188III	TCNNGA	1 cut(s)	383
Hpy8I	GTNNAC	1 cut(s)	128
Hpy99I	CGWCG	1 cut(s)	129
HpyAV	CCTTC	1 cut(s)	49
HpyCH4III	ACNGT	1 cut(s)	46
HpyCH4IV	ACGT	1 cut(s)	199
HpyCH4V	TGCA	4 cut(s)	197, 283, 356, 389
HpyF10VI	GCNNNNNNNGC	1 cut(s)	289
HpyF3I	CTNAG	1 cut(s)	189
HpySE526I	ACGT	1 cut(s)	199
Hsp92I	GRCGYC	1 cut(s)	124
Hsp92II	CATG	1 cut(s)	34
HspAI	GCGC	1 cut(s)	368
Kzo9I	GATC	2 cut(s)	173, 233
LmnI	GCTCC	1 cut(s)	231
LpnPI	CCDG	5 cut(s)	132, 156, 237, 327, 354
LweI	GCATC	2 cut(s)	78, 376
MaeII	ACGT	1 cut(s)	199
MaeIII	GTNAC	3 cut(s)	61, 200, 328
MalI	GATC	2 cut(s)	175, 235
MboI	GATC	2 cut(s)	173, 233
MboII	GAAGA	2 cut(s)	79, 252
MluCI	AATT	4 cut(s)	15, 135, 333, 390
MlyI	GAGTC	1 cut(s)	123
MmeI	TCCRAC	1 cut(s)	253
MnlI	CCTC	1 cut(s)	180
Mph1103I	ATGCAT	2 cut(s)	285, 358
MseI	TTAA	3 cut(s)	134, 393, 412
MspR9I	CCNGG	1 cut(s)	342
Mva1269I	GAATGC	3 cut(s)	10, 199, 356
MvaI	CCWGG	1 cut(s)	342
MwoI	GCNNNNNNNGC	1 cut(s)	289
NdeII	GATC	2 cut(s)	173, 233
NlaIII	CATG	1 cut(s)	34
NlaIV	GGNNCC	1 cut(s)	227
NmuCI	GTSAC	3 cut(s)	61, 200, 328
NsiI	ATGCAT	2 cut(s)	285, 358
NspI	RCATGY	1 cut(s)	34
PaeI	GCATGC	1 cut(s)	34
PctI	GAATGC	3 cut(s)	10, 199, 356
PfeI	GAWTC	1 cut(s)	379
PleI	GAGTC	1 cut(s)	123
PmaCI	CACGTG	1 cut(s)	200
PmlI	CACGTG	1 cut(s)	200
PpsI	GAGTC	1 cut(s)	123
Ppu21I	YACGTR	1 cut(s)	200
Psp6I	CCWGG	1 cut(s)	340
PspCI	CACGTG	1 cut(s)	200
PspFI	CCCAGC	1 cut(s)	251
PspGI	CCWGG	1 cut(s)	340
PspN4I	GGNNCC	1 cut(s)	227
SalI	GTCGAC	1 cut(s)	126
SaqAI	TTAA	3 cut(s)	134, 393, 412
Sau3AI	GATC	2 cut(s)	173, 233
SchI	GAGTC	1 cut(s)	123
ScrFI	CCNGG	1 cut(s)	342
SetI	ASST	4 cut(s)	57, 172, 202, 399
SfaNI	GCATC	2 cut(s)	78, 376
SfcI	CTRYAG	1 cut(s)	45
SphI	GCATGC	1 cut(s)	34
Sse9I	AATT	4 cut(s)	15, 135, 333, 390
StyD4I	CCNGG	1 cut(s)	340
TaaI	ACNGT	1 cut(s)	46
TaiI	ACGT	1 cut(s)	202
TaqI	TCGA	3 cut(s)	72, 127, 172
TasI	AATT	4 cut(s)	15, 135, 333, 390
TfiI	GAWTC	1 cut(s)	379
Tru1I	TTAA	3 cut(s)	134, 393, 412
Tru9I	TTAA	3 cut(s)	134, 393, 412
TscAI	CASTG	2 cut(s)	49, 193
TseFI	GTSAC	3 cut(s)	61, 200, 328
Tsp45I	GTSAC	3 cut(s)	61, 200, 328
TspDTI	ATGAA	3 cut(s)	17, 313, 349
TspRI	CASTG	2 cut(s)	49, 193
XceI	RCATGY	1 cut(s)	34
XmiI	GTMKAC	1 cut(s)	127
Zsp2I	ATGCAT	2 cut(s)	285, 358

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.