Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0001888

Physical Location & Seq

Genomic Coordinates Forward (+)

8990577 .. 8991566

Gene Structure 990 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG110300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGCAACAAGCAAGCGCACCACCATCCGGCGCTAATCCGAGCGCAAGCGCAGTTCCGGTAGCATACGCTAATCCCACTGTTGCGATCATCAGCCCTAATTTCTGCACTCCCTACCCTGTTGATCTTGGTATTGTCCGAAAAGTTCTAACCATAACCGATGGCAACTTTGTAGTCACGGATGTCAATGGTAACACTGTTTTCAAAGTGAAAGGAGCGCACTTGAGCCTACGTGACCGTCGAGTTTTACTTGACGCTGCTGGCTACCCCATTGTAACTTTCCGAAAGAAGTTGAGGTCGGTACATGAAAGATGGCAAGTTTTCAGGGGAGATAGCACAGAATCGAGTAACCTGGTATTTAGTGTTAAGCAATCTTCAATGATTCAGATGAAGACCAAATTGGATGTGTTCTTAGCAAATAACACAGGAGAGTATGCACCTGACTTCCAGGTTAAAGGAAGTTGGTTTGAAAGATCTTGTGTTATACACGCTGGCAACTCCTCCACCATTATTGCCCAAATGCATAAGAAGCACACAGTTTCAAGCGTGTTGTTTGGGAAGGACAATTTCAGTGTCACAGTATATCCCGGGGTTGACTACGCTTTCATCGTTGCGCTTATTGTCATCCTTGATGAGATCAATGCTGACTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009725 GO:0009751 GO:0010033 GO:0014070 GO:0042221 GO:0042493 GO:0043207 GO:0046677 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0098542 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOR

Protein Analysis

216

Amino Acids

23.58

Weight (kDa)

9.08

Isoelectric Point (pI)

36.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LOR	PF04525	41 - 210	1.8e-53	LURP-one-related

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001888)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33840 AT1G33840 AT2G14560 AT2G14560 AT2G14560 AT2G14560 AT3G11740 AT5G01750 AT5G01750
fragaria_vesca	FvH4_6g10350 FvH4_6g10360 FvH4_6g10360
malus_domestica	MD04G1169400.v1.1 MD12G1182900.v1.1
prunus_persica	Prupe.6G287400_v2.0.a1 Prupe.6G287500_v2.0.a1 Prupe.6G287900_v2.0.a1
pyrus_communis	pycom04g15000 pycom12g17170
rosa_chinensis	RchiOBHm_Chr3g0461171 RchiOBHm_Chr3g0461181 RchiOBHm_Chr3g0461261
rosa_laevigata	RLG00000024947 RLG00000024948
rosa_multiflora	Rmu_sc0009344.1_g000007 Rmu_sc0009344.1_g000008
rosa_roxburghii	Rroxscaffold_6G00418740 Rroxscaffold_6G00418760 Rroxscaffold_6G00418810 Rroxscaffold_6G00418820
rosa_rugosa	Rorug03G0048800 Rorug03G0048800 Rorug03G0048900 Rorug03G0049300
rosa_samantha	Rh3AG106000 Rh3AG106100 Rh3BG110300 Rh3BG110400 Rh3BG110800 Rh3CG111900 Rh3CG112000 Rh3DG112100 Rh3DG112200 Rh3DG112600
rosa_wichuraiana	Rw3G009090 Rw3G009130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	300
AfiI	CCNNNNNNNGG	1 cut(s)	26
AgsI	TTSAA	4 cut(s)	202, 375, 467, 540
AjnI	CCWGG	2 cut(s)	348, 444
AjuI	GAANNNNNNNTTGG	2 cut(s)	380, 412
Ama87I	CYCGRG	1 cut(s)	584
ApeKI	GCWGC	1 cut(s)	254
AspLEI	GCGC	6 cut(s)	17, 32, 44, 50, 217, 613
AsuC2I	CCSGG	2 cut(s)	585, 586
AvaI	CYCGRG	1 cut(s)	584
BbsI	GAAGAC	1 cut(s)	395
BbvI	GCAGC	1 cut(s)	241
BccI	CCATC	3 cut(s)	31, 152, 303
BciT130I	CCWGG	2 cut(s)	350, 446
BcnI	CCSGG	2 cut(s)	585, 586
BfoI	RGCGCY	1 cut(s)	33
BglII	AGATCT	1 cut(s)	470
BisI	GCNGC	1 cut(s)	255
BlsI	GCNGC	1 cut(s)	256
Bme1390I	CCNGG	4 cut(s)	350, 446, 585, 586
BmeT110I	CYCGRG	1 cut(s)	584
BmrFI	CCNGG	4 cut(s)	350, 446, 585, 586
BpiI	GAAGAC	1 cut(s)	395
BpuEI	CTTGAG	1 cut(s)	241
BpuMI	CCSGG	2 cut(s)	585, 586
BsaAI	YACGTR	1 cut(s)	230
BsaJI	CCNNGG	2 cut(s)	584, 585
BsaWI	WCCGGW	1 cut(s)	55
Bsc4I	CCNNNNNNNGG	1 cut(s)	26
BseBI	CCWGG	2 cut(s)	350, 446
BseDI	CCNNGG	2 cut(s)	584, 585
BseGI	GGATG	4 cut(s)	23, 184, 406, 621
BseLI	CCNNNNNNNGG	1 cut(s)	26
BseRI	GAGGAG	1 cut(s)	487
BseXI	GCAGC	1 cut(s)	241
BsgI	GTGCAG	1 cut(s)	88
BsiHKCI	CYCGRG	1 cut(s)	584
BsiSI	CCGG	3 cut(s)	27, 56, 585
BslI	CCNNNNNNNGG	1 cut(s)	26
BsoBI	CYCGRG	1 cut(s)	584
Bsp143I	GATC	4 cut(s)	84, 121, 470, 633
BssECI	CCNNGG	2 cut(s)	584, 585
BssMI	GATC	4 cut(s)	84, 121, 470, 633
Bst2UI	CCWGG	2 cut(s)	350, 446
Bst4CI	ACNGT	5 cut(s)	79, 196, 236, 535, 577
BstBAI	YACGTR	1 cut(s)	230
BstC8I	GCNNGC	4 cut(s)	13, 46, 259, 490
BstDEI	CTNAG	1 cut(s)	409
BstF5I	GGATG	4 cut(s)	23, 184, 406, 621
BstH2I	RGCGCY	1 cut(s)	33
BstHHI	GCGC	6 cut(s)	17, 32, 44, 50, 217, 613
BstKTI	GATC	4 cut(s)	87, 124, 473, 636
BstMBI	GATC	4 cut(s)	84, 121, 470, 633
BstMWI	GCNNNNNNNGC	1 cut(s)	526
BstNI	CCWGG	2 cut(s)	350, 446
BstSCI	CCNGG	4 cut(s)	348, 444, 583, 584
BstV1I	GCAGC	1 cut(s)	241
BstV2I	GAAGAC	1 cut(s)	395
BstX2I	RGATCY	1 cut(s)	470
BstYI	RGATCY	1 cut(s)	470
BtsCI	GGATG	4 cut(s)	23, 184, 406, 621
BtsIMutI	CAGTG	3 cut(s)	75, 192, 574
Cac8I	GCNNGC	4 cut(s)	13, 46, 259, 490
CfoI	GCGC	6 cut(s)	17, 32, 44, 50, 217, 613
Cfr9I	CCCGGG	1 cut(s)	584
CseI	GACGC	1 cut(s)	260
CsiI	ACCWGGT	1 cut(s)	348
Csp6I	GTAC	1 cut(s)	299
CspCI	CAANNNNNGTGG	2 cut(s)	490, 525
CviAII	CATG	1 cut(s)	302
CviJI	RGCY	3 cut(s)	93, 225, 261
CviKI_1	RGCY	3 cut(s)	93, 225, 261
CviQI	GTAC	1 cut(s)	299
DdeI	CTNAG	1 cut(s)	409
DpnI	GATC	4 cut(s)	86, 123, 472, 635
DpnII	GATC	4 cut(s)	84, 121, 470, 633
Eco88I	CYCGRG	1 cut(s)	584
EcoRII	CCWGG	2 cut(s)	348, 444
EcoT22I	ATGCAT	1 cut(s)	522
FaeI	CATG	1 cut(s)	305
FaiI	YATR	7 cut(s)	64, 152, 303, 432, 482, 522, 580
FatI	CATG	1 cut(s)	301
Fnu4HI	GCNGC	1 cut(s)	255
FokI	GGATG	4 cut(s)	10, 191, 413, 608
Fsp4HI	GCNGC	1 cut(s)	255
GlaI	GCGC	6 cut(s)	16, 31, 43, 49, 216, 612
GluI	GCNGC	1 cut(s)	255
HaeII	RGCGCY	1 cut(s)	33
HapII	CCGG	3 cut(s)	27, 56, 585
HgaI	GACGC	1 cut(s)	260
HhaI	GCGC	6 cut(s)	17, 32, 44, 50, 217, 613
Hin1II	CATG	1 cut(s)	305
Hin6I	GCGC	6 cut(s)	15, 30, 42, 48, 215, 611
HinP1I	GCGC	6 cut(s)	15, 30, 42, 48, 215, 611
HincII	GTYRAC	1 cut(s)	592
HindII	GTYRAC	1 cut(s)	592
HinfI	GANTC	3 cut(s)	338, 379, 644
HpaII	CCGG	3 cut(s)	27, 56, 585
Hpy166II	GTNNAC	1 cut(s)	592
Hpy188I	TCNGA	4 cut(s)	39, 137, 281, 384
Hpy188III	TCNNGA	1 cut(s)	648
Hpy8I	GTNNAC	1 cut(s)	592
Hpy99I	CGWCG	1 cut(s)	240
HpyAV	CCTTC	1 cut(s)	550
HpyCH4III	ACNGT	5 cut(s)	79, 196, 236, 535, 577
HpyCH4IV	ACGT	1 cut(s)	229
HpyCH4V	TGCA	4 cut(s)	4, 105, 434, 520
HpyF10VI	GCNNNNNNNGC	1 cut(s)	526
HpyF3I	CTNAG	1 cut(s)	409
HpySE526I	ACGT	1 cut(s)	229
Hsp92II	CATG	1 cut(s)	305
HspAI	GCGC	6 cut(s)	15, 30, 42, 48, 215, 611
Kzo9I	GATC	4 cut(s)	84, 121, 470, 633
LmnI	GCTCC	1 cut(s)	212
Lsp1109I	GCAGC	1 cut(s)	241
MabI	ACCWGGT	1 cut(s)	348
MaeII	ACGT	1 cut(s)	229
MaeIII	GTNAC	6 cut(s)	172, 188, 230, 271, 344, 571
MalI	GATC	4 cut(s)	86, 123, 472, 635
MboI	GATC	4 cut(s)	84, 121, 470, 633
MboII	GAAGA	2 cut(s)	363, 400
MflI	RGATCY	1 cut(s)	470
MluCI	AATT	3 cut(s)	97, 395, 562
MlyI	GAGTC	1 cut(s)	638
MnlI	CCTC	2 cut(s)	285, 508
Mph1103I	ATGCAT	1 cut(s)	522
MseI	TTAA	2 cut(s)	363, 450
MspI	CCGG	3 cut(s)	27, 56, 585
MspR9I	CCNGG	4 cut(s)	350, 446, 585, 586
MvaI	CCWGG	2 cut(s)	350, 446
MwoI	GCNNNNNNNGC	1 cut(s)	526
NciI	CCSGG	2 cut(s)	585, 586
NdeII	GATC	4 cut(s)	84, 121, 470, 633
NlaIII	CATG	1 cut(s)	305
NmuCI	GTSAC	3 cut(s)	172, 230, 571
NsiI	ATGCAT	1 cut(s)	522
PcsI	WCGNNNNNNNCGW	2 cut(s)	235, 603
PfeI	GAWTC	2 cut(s)	338, 379
PkrI	GCNGC	1 cut(s)	256
PleI	GAGTC	1 cut(s)	638
PpsI	GAGTC	1 cut(s)	638
Ppu21I	YACGTR	1 cut(s)	230
Psp6I	CCWGG	2 cut(s)	348, 444
PspGI	CCWGG	2 cut(s)	348, 444
PsuI	RGATCY	1 cut(s)	470
RsaI	GTAC	1 cut(s)	300
RsaNI	GTAC	1 cut(s)	299
SaqAI	TTAA	2 cut(s)	363, 450
SatI	GCNGC	1 cut(s)	255
Sau3AI	GATC	4 cut(s)	84, 121, 470, 633
SchI	GAGTC	1 cut(s)	638
ScrFI	CCNGG	4 cut(s)	350, 446, 585, 586
SetI	ASST	5 cut(s)	232, 296, 351, 439, 450
SexAI	ACCWGGT	1 cut(s)	348
SmaI	CCCGGG	1 cut(s)	586
SmlI	CTYRAG	1 cut(s)	220
SmoI	CTYRAG	1 cut(s)	220
Sse9I	AATT	3 cut(s)	97, 395, 562
StyD4I	CCNGG	4 cut(s)	348, 444, 583, 584
TaaI	ACNGT	5 cut(s)	79, 196, 236, 535, 577
TaiI	ACGT	1 cut(s)	232
TaqI	TCGA	2 cut(s)	238, 341
TasI	AATT	3 cut(s)	97, 395, 562
TfiI	GAWTC	2 cut(s)	338, 379
Tru1I	TTAA	2 cut(s)	363, 450
Tru9I	TTAA	2 cut(s)	363, 450
TscAI	CASTG	3 cut(s)	82, 199, 574
TseFI	GTSAC	3 cut(s)	172, 230, 571
TseI	GCWGC	1 cut(s)	254
Tsp45I	GTSAC	3 cut(s)	172, 230, 571
TspDTI	ATGAA	3 cut(s)	318, 401, 592
TspGWI	ACGGA	1 cut(s)	191
TspMI	CCCGGG	1 cut(s)	584
TspRI	CASTG	3 cut(s)	82, 199, 574
XmaI	CCCGGG	1 cut(s)	584
Zsp2I	ATGCAT	1 cut(s)	522

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.