Rroxscaffold_6G00418740

LURP-one-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0001888
Physical Location & Seq
Forward (+)
40326621 .. 40340421
13801 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00418740.1

Sequence Viewer

Length: 726 bp
ATGCTGTTGGTGCGCTATTACTTGGGAAGAAGATTATTCTCTTACTTGGCTGAGAGAGAACATACTTGGTCGCGAGAAAATAAAACAATCACAGCGCACGCGCGTGTTGATGCGAGCGTGCGTAGCGATGTGCTTGAGAAAAAACTAGGCTGCTTCTTTTTTTTTCAACAGTGGGCCTTAAAGCATATATTTGTCCCTATTAATGTTAAGTACAATCAGCCTCCAATTATTGCATTACCACAAGACTTGTGTGGACTGTGCTTCTACTCCCTTCTAGCTCCAAAAGTCGATCACCCTCTAAGCATGAGCCCTAAGTACTGTAGTTTCTACCGCATCAATATTTCAATTGTCAGAGAAGTTAAGACCTTAGCTACTGATGATGATGTTAGCATCCTCGTAGTAAAAAATGCCGATGGTAATATCATTGTTGGAGTGAAGCAGAAATTTTATTGGTTTCGTCGTGATCGACTAGTTTTGTACAACGCCGCTGGAAAACCCATTGTCACTCTTCGACGTAAGTCAAAGATGGCAAACAAACGGAAAGCTTTTAGGGGCAATAGCAAACAACTCAGTGATCTTATTTTTACTGCTGAATCATCTGCTTCACAGTTCCATTTAGATACCAAGTTGAATCTGTTCTTAGCAAAGAACAAAACAAAGAATACACCTGACTTTAAGCTCAAAGGAAATTGGTTCGAACGATATATCTTGCGCTGTATATGCTAA

Protein Analysis

241

Amino Acids

28.08

Weight (kDa)

9.94

Isoelectric Point (pI)

37.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOR PF04525 133 - 234 4.3e-16 LURP-one-related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 73, 101, 103
AciI CCGC 2 cut(s) 331, 486
AcsI RAATTY 1 cut(s) 443
AfaI GTAC 3 cut(s) 212, 317, 479
AgsI TTSAA 3 cut(s) 167, 345, 631
AhlI ACTAGT 1 cut(s) 469
AleI CACNNNNGTG 1 cut(s) 102
AluBI AGCT 4 cut(s) 278, 371, 545, 679
AluI AGCT 4 cut(s) 278, 371, 545, 679
AoxI GGCC 1 cut(s) 174
ApeKI GCWGC 1 cut(s) 150
ApoI RAATTY 1 cut(s) 443
AseI ATTAAT 1 cut(s) 201
Asp700I GAANNNNTTC 1 cut(s) 635
AspLEI GCGC 4 cut(s) 15, 97, 103, 714
AspS9I GGNCC 1 cut(s) 174
AsuHPI GGTGA 1 cut(s) 284
AsuII TTCGAA 1 cut(s) 696
BanII GRGCYC 1 cut(s) 311
BbvI GCAGC 1 cut(s) 137
BccI CCATC 2 cut(s) 407, 520
BcuI ACTAGT 1 cut(s) 469
BfaI CTAG 3 cut(s) 146, 275, 470
BfmI CTRYAG 1 cut(s) 319
BisI GCNGC 2 cut(s) 151, 486
BlsI GCNGC 2 cut(s) 152, 487
BmcAI AGTACT 1 cut(s) 317
BmgT120I GGNCC 1 cut(s) 174
BmsI GCATC 3 cut(s) 100, 342, 399
BoxI GACNNNNGTC 1 cut(s) 517
Bpu10I CCTNAGC 1 cut(s) 367
Bpu14I TTCGAA 1 cut(s) 696
BpuEI CTTGAG 1 cut(s) 155
BseGI GGATG 1 cut(s) 390
BseMII CTCAG 2 cut(s) 42, 583
BseXI GCAGC 1 cut(s) 137
Bsh1236I CGCG 3 cut(s) 73, 101, 103
BshFI GGCC 1 cut(s) 176
BslFI GGGAC 1 cut(s) 179
BsmFI GGGAC 1 cut(s) 179
BsnI GGCC 1 cut(s) 176
Bsp119I TTCGAA 1 cut(s) 696
Bsp1286I GDGCHC 1 cut(s) 311
Bsp1407I TGTACA 1 cut(s) 477
Bsp143I GATC 3 cut(s) 289, 463, 574
Bsp68I TCGCGA 1 cut(s) 73
BspACI CCGC 2 cut(s) 331, 486
BspANI GGCC 1 cut(s) 176
BspCNI CTCAG 2 cut(s) 43, 582
BspFNI CGCG 3 cut(s) 73, 101, 103
BspT104I TTCGAA 1 cut(s) 696
BsrGI TGTACA 1 cut(s) 477
BssMI GATC 3 cut(s) 289, 463, 574
Bst4CI ACNGT 4 cut(s) 171, 258, 320, 609
Bst6I CTCTTC 1 cut(s) 513
BstAUI TGTACA 1 cut(s) 477
BstBI TTCGAA 1 cut(s) 696
BstC8I GCNNGC 3 cut(s) 99, 115, 119
BstDEI CTNAG 6 cut(s) 51, 299, 312, 367, 569, 640
BstF5I GGATG 1 cut(s) 390
BstFNI CGCG 3 cut(s) 73, 101, 103
BstHHI GCGC 4 cut(s) 15, 97, 103, 714
BstKTI GATC 3 cut(s) 292, 466, 577
BstMBI GATC 3 cut(s) 289, 463, 574
BstMWI GCNNNNNNNGC 3 cut(s) 10, 123, 720
BstPAI GACNNNNGTC 1 cut(s) 517
BstSFI CTRYAG 1 cut(s) 319
BstUI CGCG 3 cut(s) 73, 101, 103
BstV1I GCAGC 1 cut(s) 137
BsuRI GGCC 1 cut(s) 176
BtgZI GCGATG 1 cut(s) 141
BtsCI GGATG 1 cut(s) 390
BtsIMutI CAGTG 2 cut(s) 176, 577
BtuMI TCGCGA 1 cut(s) 73
Cac8I GCNNGC 3 cut(s) 99, 115, 119
CfoI GCGC 4 cut(s) 15, 97, 103, 714
Cfr13I GGNCC 1 cut(s) 174
Csp6I GTAC 3 cut(s) 211, 316, 478
CspCI CAANNNNNGTGG 2 cut(s) 228, 263
CviAII CATG 1 cut(s) 304
CviJI RGCY 9 cut(s) 50, 150, 176, 220, 278, 309, 371, 545, 679
CviKI_1 RGCY 9 cut(s) 50, 150, 176, 220, 278, 309, 371, 545, 679
CviQI GTAC 3 cut(s) 211, 316, 478
DdeI CTNAG 6 cut(s) 51, 299, 312, 367, 569, 640
DpnI GATC 3 cut(s) 291, 465, 576
DpnII GATC 3 cut(s) 289, 463, 574
Eam1104I CTCTTC 1 cut(s) 513
EarI CTCTTC 1 cut(s) 513
Eco24I GRGCYC 1 cut(s) 311
EcoT38I GRGCYC 1 cut(s) 311
FaeI CATG 1 cut(s) 307
FaiI YATR 7 cut(s) 63, 186, 188, 305, 705, 719, 721
FaqI GGGAC 1 cut(s) 179
FatI CATG 1 cut(s) 303
Fnu4HI GCNGC 2 cut(s) 151, 486
FokI GGATG 1 cut(s) 377
FriOI GRGCYC 1 cut(s) 311
Fsp4HI GCNGC 2 cut(s) 151, 486
FspBI CTAG 3 cut(s) 146, 275, 470
GlaI GCGC 4 cut(s) 14, 96, 102, 713
GluI GCNGC 2 cut(s) 151, 486
HaeIII GGCC 1 cut(s) 176
HhaI GCGC 4 cut(s) 15, 97, 103, 714
Hin1II CATG 1 cut(s) 307
Hin6I GCGC 4 cut(s) 13, 95, 101, 712
HinP1I GCGC 4 cut(s) 13, 95, 101, 712
HindIII AAGCTT 1 cut(s) 543
HinfI GANTC 2 cut(s) 593, 631
HphI GGTGA 1 cut(s) 284
Hpy166II GTNNAC 1 cut(s) 254
Hpy188I TCNGA 1 cut(s) 353
Hpy188III TCNNGA 2 cut(s) 72, 461
Hpy8I GTNNAC 1 cut(s) 254
Hpy99I CGWCG 2 cut(s) 462, 516
HpyAV CCTTC 1 cut(s) 281
HpyCH4III ACNGT 4 cut(s) 171, 258, 320, 609
HpyCH4IV ACGT 1 cut(s) 514
HpyCH4V TGCA 1 cut(s) 233
HpyF10VI GCNNNNNNNGC 3 cut(s) 10, 123, 720
HpyF3I CTNAG 6 cut(s) 51, 299, 312, 367, 569, 640
HpySE526I ACGT 1 cut(s) 514
Hsp92II CATG 1 cut(s) 307
HspAI GCGC 4 cut(s) 13, 95, 101, 712
Kzo9I GATC 3 cut(s) 289, 463, 574
LmnI GCTCC 1 cut(s) 283
LpnPI CCDG 2 cut(s) 474, 681
Lsp1109I GCAGC 1 cut(s) 137
LweI GCATC 3 cut(s) 100, 342, 399
MaeI CTAG 3 cut(s) 146, 275, 470
MaeII ACGT 1 cut(s) 514
MaeIII GTNAC 1 cut(s) 502
MalI GATC 3 cut(s) 291, 465, 576
MboI GATC 3 cut(s) 289, 463, 574
MboII GAAGA 3 cut(s) 39, 42, 500
MfeI CAATTG 1 cut(s) 345
MhlI GDGCHC 1 cut(s) 311
MluCI AATT 4 cut(s) 225, 345, 443, 688
MmeI TCCRAC 1 cut(s) 409
MnlI CCTC 3 cut(s) 231, 306, 404
MroXI GAANNNNTTC 1 cut(s) 635
MseI TTAA 5 cut(s) 179, 201, 207, 360, 675
MslI CAYNNNNRTG 1 cut(s) 102
MspA1I CMGCKG 1 cut(s) 488
MunI CAATTG 1 cut(s) 345
MvnI CGCG 3 cut(s) 73, 101, 103
MwoI GCNNNNNNNGC 3 cut(s) 10, 123, 720
NdeII GATC 3 cut(s) 289, 463, 574
NlaIII CATG 1 cut(s) 307
NmuCI GTSAC 1 cut(s) 502
NruI TCGCGA 1 cut(s) 73
NspV TTCGAA 1 cut(s) 696
OliI CACNNNNGTG 1 cut(s) 102
PcsI WCGNNNNNNNCGW 1 cut(s) 463
PdmI GAANNNNTTC 1 cut(s) 635
PfeI GAWTC 2 cut(s) 593, 631
PkrI GCNGC 2 cut(s) 152, 487
PshAI GACNNNNGTC 1 cut(s) 517
PshBI ATTAAT 1 cut(s) 201
PspPI GGNCC 1 cut(s) 174
RruI TCGCGA 1 cut(s) 73
RsaI GTAC 3 cut(s) 212, 317, 479
RsaNI GTAC 3 cut(s) 211, 316, 478
RseI CAYNNNNRTG 1 cut(s) 102
SaqAI TTAA 5 cut(s) 179, 201, 207, 360, 675
SatI GCNGC 2 cut(s) 151, 486
Sau3AI GATC 3 cut(s) 289, 463, 574
Sau96I GGNCC 1 cut(s) 174
ScaI AGTACT 1 cut(s) 317
SduI GDGCHC 1 cut(s) 311
SetI ASST 7 cut(s) 280, 368, 373, 517, 547, 670, 681
SfaNI GCATC 3 cut(s) 100, 342, 399
SfcI CTRYAG 1 cut(s) 319
SfuI TTCGAA 1 cut(s) 696
SmiMI CAYNNNNRTG 1 cut(s) 102
SmlI CTYRAG 1 cut(s) 134
SmoI CTYRAG 1 cut(s) 134
SpeI ACTAGT 1 cut(s) 469
Sse9I AATT 4 cut(s) 225, 345, 443, 688
SsiI CCGC 2 cut(s) 331, 486
SspI AATATT 1 cut(s) 340
SspMI CTAG 3 cut(s) 146, 275, 470
TaaI ACNGT 4 cut(s) 171, 258, 320, 609
TaiI ACGT 1 cut(s) 517
TaqI TCGA 4 cut(s) 288, 466, 511, 696
TasI AATT 4 cut(s) 225, 345, 443, 688
TatI WGTACW 3 cut(s) 210, 315, 477
TauI GCSGC 1 cut(s) 488
TfiI GAWTC 2 cut(s) 593, 631
Tru1I TTAA 5 cut(s) 179, 201, 207, 360, 675
Tru9I TTAA 5 cut(s) 179, 201, 207, 360, 675
TscAI CASTG 2 cut(s) 176, 577
TseFI GTSAC 1 cut(s) 502
TseI GCWGC 1 cut(s) 150
Tsp45I GTSAC 1 cut(s) 502
TspGWI ACGGA 1 cut(s) 553
TspRI CASTG 2 cut(s) 176, 577
VspI ATTAAT 1 cut(s) 201
XapI RAATTY 1 cut(s) 443
XmnI GAANNNNTTC 1 cut(s) 635
XspI CTAG 3 cut(s) 146, 275, 470
ZrmI AGTACT 1 cut(s) 317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.