Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009344.1

Orthogroup ID

OG0001888

Physical Location & Seq

Genomic Coordinates Forward (+)

16519 .. 17299

Gene Structure 781 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009344.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

atggcacaagcaatcatcagccctcacttctgcagtccgtaccctgttgatcttggaatcgtcagacaagttctgtccggcaacttttcagtcaaggatgttaatggcaatactgttttcaaagtgaaaggagcatttttgagcttgcgtgaacgccgagtcttagttgatggtgctgggaatcccattgtcactcttcaaaagaagttgaagacgaaattgcacgttttcttggcaaataataaaggagagtatgctcctgacttcaaggtgaagggaagttggtttgaacaatcttgtgttgtatattctgggaaatccaagtcctccaacattttggctgaaatgcacaagaagcacacagttacaagcgtgttgtttgggaaggacaatttcatggtcacagtgtatccaggtgttgaccaagcactcattgtcgcgcttattttcattcttaatgagatgaacttcagtggttctggttctaattctggttccggcggagactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009725 GO:0009751 GO:0010033 GO:0014070 GO:0042221 GO:0042493 GO:0043207 GO:0046677 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0098542 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOR

Protein Analysis

169

Amino Acids

18.34

Weight (kDa)

9.49

Isoelectric Point (pI)

22.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001888)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33840 AT1G33840 AT2G14560 AT2G14560 AT2G14560 AT2G14560 AT3G11740 AT5G01750 AT5G01750
fragaria_vesca	FvH4_6g10350 FvH4_6g10360 FvH4_6g10360
malus_domestica	MD04G1169400.v1.1 MD12G1182900.v1.1
prunus_persica	Prupe.6G287400_v2.0.a1 Prupe.6G287500_v2.0.a1 Prupe.6G287900_v2.0.a1
pyrus_communis	pycom04g15000 pycom12g17170
rosa_chinensis	RchiOBHm_Chr3g0461171 RchiOBHm_Chr3g0461181 RchiOBHm_Chr3g0461261
rosa_laevigata	RLG00000024947 RLG00000024948
rosa_multiflora	Rmu_sc0009344.1_g000007 Rmu_sc0009344.1_g000008
rosa_roxburghii	Rroxscaffold_6G00418740 Rroxscaffold_6G00418760 Rroxscaffold_6G00418810 Rroxscaffold_6G00418820
rosa_rugosa	Rorug03G0048800 Rorug03G0048800 Rorug03G0048900 Rorug03G0049300
rosa_samantha	Rh3AG106000 Rh3AG106100 Rh3BG110300 Rh3BG110400 Rh3BG110800 Rh3CG111900 Rh3CG112000 Rh3DG112100 Rh3DG112200 Rh3DG112600
rosa_wichuraiana	Rw3G009090 Rw3G009130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	440
AciI	CCGC	1 cut(s)	501
AcuI	CTGAAG	1 cut(s)	454
AfaI	GTAC	1 cut(s)	41
AgsI	TTSAA	5 cut(s)	121, 200, 211, 268, 290
AjnI	CCWGG	1 cut(s)	412
AluBI	AGCT	1 cut(s)	144
AluI	AGCT	1 cut(s)	144
Alw26I	GTCTC	1 cut(s)	498
AspLEI	GCGC	1 cut(s)	442
AsuHPI	GGTGA	1 cut(s)	283
BbsI	GAAGAC	1 cut(s)	218
BccI	CCATC	1 cut(s)	164
BciT130I	CCWGG	1 cut(s)	414
BciVI	GTATCC	1 cut(s)	420
BcoDI	GTCTC	1 cut(s)	498
BfmI	CTRYAG	1 cut(s)	31
BfuI	GTATCC	1 cut(s)	420
Bme1390I	CCNGG	1 cut(s)	414
BmiI	GGNNCC	1 cut(s)	496
BmrFI	CCNGG	1 cut(s)	414
BpiI	GAAGAC	1 cut(s)	218
BseBI	CCWGG	1 cut(s)	414
BseGI	GGATG	1 cut(s)	103
BseYI	CCCAGC	1 cut(s)	176
Bsh1236I	CGCG	1 cut(s)	440
BsiSI	CCGG	2 cut(s)	78, 498
BsmAI	GTCTC	1 cut(s)	498
Bsp143I	GATC	1 cut(s)	49
BspACI	CCGC	1 cut(s)	501
BspFNI	CGCG	1 cut(s)	440
BspLI	GGNNCC	1 cut(s)	496
BspMAI	CTGCAG	1 cut(s)	35
BssMI	GATC	1 cut(s)	49
Bst2UI	CCWGG	1 cut(s)	414
Bst4CI	ACNGT	3 cut(s)	115, 364, 406
Bst6I	CTCTTC	1 cut(s)	201
BstC8I	GCNNGC	1 cut(s)	146
BstDEI	CTNAG	1 cut(s)	163
BstF5I	GGATG	1 cut(s)	103
BstFNI	CGCG	1 cut(s)	440
BstHHI	GCGC	1 cut(s)	442
BstKTI	GATC	1 cut(s)	52
BstMAI	GTCTC	1 cut(s)	498
BstMBI	GATC	1 cut(s)	49
BstMWI	GCNNNNNNNGC	1 cut(s)	355
BstNI	CCWGG	1 cut(s)	414
BstSCI	CCNGG	1 cut(s)	412
BstSFI	CTRYAG	1 cut(s)	31
BstUI	CGCG	1 cut(s)	440
BstV2I	GAAGAC	1 cut(s)	218
BstXI	CCANNNNNNTGG	1 cut(s)	337
BsuI	GTATCC	1 cut(s)	420
BtsCI	GGATG	1 cut(s)	103
BtsIMutI	CAGTG	2 cut(s)	411, 478
Cac8I	GCNNGC	1 cut(s)	146
CfoI	GCGC	1 cut(s)	442
Csp6I	GTAC	1 cut(s)	40
CviAII	CATG	1 cut(s)	397
CviJI	RGCY	3 cut(s)	21, 144, 341
CviKI_1	RGCY	3 cut(s)	21, 144, 341
CviQI	GTAC	1 cut(s)	40
DdeI	CTNAG	1 cut(s)	163
DpnI	GATC	1 cut(s)	51
DpnII	GATC	1 cut(s)	49
Eam1104I	CTCTTC	1 cut(s)	201
EarI	CTCTTC	1 cut(s)	201
Eco57I	CTGAAG	1 cut(s)	454
EcoRII	CCWGG	1 cut(s)	412
FaeI	CATG	1 cut(s)	400
FaiI	YATR	3 cut(s)	255, 307, 398
FatI	CATG	1 cut(s)	396
FokI	GGATG	1 cut(s)	110
GlaI	GCGC	1 cut(s)	441
GsaI	CCCAGC	1 cut(s)	180
HapII	CCGG	2 cut(s)	78, 498
HhaI	GCGC	1 cut(s)	442
Hin1II	CATG	1 cut(s)	400
Hin6I	GCGC	1 cut(s)	440
HinP1I	GCGC	1 cut(s)	440
HincII	GTYRAC	1 cut(s)	421
HindII	GTYRAC	1 cut(s)	421
HinfI	GANTC	3 cut(s)	57, 159, 181
HpaII	CCGG	2 cut(s)	78, 498
HphI	GGTGA	1 cut(s)	283
Hpy166II	GTNNAC	2 cut(s)	152, 421
Hpy188I	TCNGA	1 cut(s)	65
Hpy188III	TCNNGA	1 cut(s)	260
Hpy8I	GTNNAC	2 cut(s)	152, 421
HpyAV	CCTTC	2 cut(s)	268, 379
HpyCH4III	ACNGT	3 cut(s)	115, 364, 406
HpyCH4IV	ACGT	1 cut(s)	225
HpyCH4V	TGCA	3 cut(s)	33, 223, 349
HpyF10VI	GCNNNNNNNGC	1 cut(s)	355
HpyF3I	CTNAG	1 cut(s)	163
HpySE526I	ACGT	1 cut(s)	225
Hsp92II	CATG	1 cut(s)	400
HspAI	GCGC	1 cut(s)	440
Kzo9I	GATC	1 cut(s)	49
LmnI	GCTCC	2 cut(s)	131, 262
LpnPI	CCDG	9 cut(s)	57, 91, 162, 273, 297, 399, 426, 465, 477
MaeII	ACGT	1 cut(s)	225
MaeIII	GTNAC	3 cut(s)	190, 364, 400
MalI	GATC	1 cut(s)	51
MboI	GATC	1 cut(s)	49
MboII	GAAGA	2 cut(s)	188, 223
MluCI	AATT	3 cut(s)	218, 391, 487
MlyI	GAGTC	1 cut(s)	168
MmeI	TCCRAC	1 cut(s)	354
MnlI	CCTC	2 cut(s)	33, 337
MseI	TTAA	2 cut(s)	102, 456
MspI	CCGG	2 cut(s)	78, 498
MspR9I	CCNGG	1 cut(s)	414
MvaI	CCWGG	1 cut(s)	414
MvnI	CGCG	1 cut(s)	440
MwoI	GCNNNNNNNGC	1 cut(s)	355
NdeII	GATC	1 cut(s)	49
NlaIII	CATG	1 cut(s)	400
NlaIV	GGNNCC	1 cut(s)	496
NmeAIII	GCCGAG	1 cut(s)	182
NmuCI	GTSAC	2 cut(s)	190, 400
PfeI	GAWTC	2 cut(s)	57, 181
PleI	GAGTC	1 cut(s)	167
PpsI	GAGTC	1 cut(s)	167
Psp6I	CCWGG	1 cut(s)	412
PspFI	CCCAGC	1 cut(s)	176
PspGI	CCWGG	1 cut(s)	412
PspN4I	GGNNCC	1 cut(s)	496
PstI	CTGCAG	1 cut(s)	35
RsaI	GTAC	1 cut(s)	41
RsaNI	GTAC	1 cut(s)	40
SaqAI	TTAA	2 cut(s)	102, 456
Sau3AI	GATC	1 cut(s)	49
SchI	GAGTC	1 cut(s)	168
ScrFI	CCNGG	1 cut(s)	414
SetI	ASST	4 cut(s)	146, 228, 273, 418
SfcI	CTRYAG	1 cut(s)	31
Sse9I	AATT	3 cut(s)	218, 391, 487
SsiI	CCGC	1 cut(s)	501
StyD4I	CCNGG	1 cut(s)	412
TaaI	ACNGT	3 cut(s)	115, 364, 406
TaiI	ACGT	1 cut(s)	228
TasI	AATT	3 cut(s)	218, 391, 487
TfiI	GAWTC	2 cut(s)	57, 181
Tru1I	TTAA	2 cut(s)	102, 456
Tru9I	TTAA	2 cut(s)	102, 456
TscAI	CASTG	2 cut(s)	411, 478
TseFI	GTSAC	2 cut(s)	190, 400
Tsp45I	GTSAC	2 cut(s)	190, 400
TspDTI	ATGAA	3 cut(s)	385, 439, 479
TspGWI	ACGGA	1 cut(s)	27
TspRI	CASTG	2 cut(s)	411, 478

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.