Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0001888

Physical Location & Seq

Genomic Coordinates Reverse (-)

8657845 .. 8674187

Gene Structure 16343 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G009130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGATATTAATACCAAATACTCCATCACCATCTCCCATCATCAGCCCTAAGTACTGTAATTTCTACCCCATCAGTATTTCAATTGTCAGAGAAGTTAAGACCTTAGCTACTGATGATGATGTTAGCATCCTCGTAGTAAAAAATGCTGATGGCAATACCATTGTCGGAGCGAAGCAGAAATTTTATTGGTTTCGTCATGACCGACTAGTTTTGTACAACGCCGCTGGAAAACCCTTCGACCTTTTAGGGGCGATAGCAAACAACTCAGTGGTCTTATTTTTACTGCTAAATCATGCTTCACAGTTCCATTTAGATACCAAGTTGAAAGTGTTCTTAGCAAAGAACAAAACAAAGAATGCACCTGACTTTAAGCTCAAAGGAAATTGGTTCGAACGATCTTGCGCTGTATATGCTAAGAACTCCTCCACCATCGTTGCTGAAATGCATAATAAGGACACAGTTCAAAGTGTGCTGTTTGGCAATGACAATTTCATGGTCAGAGTAAGTCCTGGTATTGACTATCCATCCATTGCCACGCTTATTGTGATCCTTGATGTGATTAATGGTGATAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009725 GO:0009751 GO:0010033 GO:0014070 GO:0042221 GO:0042493 GO:0043207 GO:0046677 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0098542 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOR

Protein Analysis

191

Amino Acids

21.27

Weight (kDa)

9.19

Isoelectric Point (pI)

32.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LOR	PF04525	45 - 185	2.5e-21	LURP-one-related

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001888)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33840 AT1G33840 AT2G14560 AT2G14560 AT2G14560 AT2G14560 AT3G11740 AT5G01750 AT5G01750
fragaria_vesca	FvH4_6g10350 FvH4_6g10360 FvH4_6g10360
malus_domestica	MD04G1169400.v1.1 MD12G1182900.v1.1
prunus_persica	Prupe.6G287400_v2.0.a1 Prupe.6G287500_v2.0.a1 Prupe.6G287900_v2.0.a1
pyrus_communis	pycom04g15000 pycom12g17170
rosa_chinensis	RchiOBHm_Chr3g0461171 RchiOBHm_Chr3g0461181 RchiOBHm_Chr3g0461261
rosa_laevigata	RLG00000024947 RLG00000024948
rosa_multiflora	Rmu_sc0009344.1_g000007 Rmu_sc0009344.1_g000008
rosa_roxburghii	Rroxscaffold_6G00418740 Rroxscaffold_6G00418760 Rroxscaffold_6G00418810 Rroxscaffold_6G00418820
rosa_rugosa	Rorug03G0048800 Rorug03G0048800 Rorug03G0048900 Rorug03G0049300
rosa_samantha	Rh3AG106000 Rh3AG106100 Rh3BG110300 Rh3BG110400 Rh3BG110800 Rh3CG111900 Rh3CG112000 Rh3DG112100 Rh3DG112200 Rh3DG112600
rosa_wichuraiana	Rw3G009090 Rw3G009130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	222
AclWI	GGATC	1 cut(s)	541
AcsI	RAATTY	1 cut(s)	179
AfaI	GTAC	2 cut(s)	53, 215
AfiI	CCNNNNNNNGG	1 cut(s)	247
AgsI	TTSAA	3 cut(s)	81, 325, 464
AhlI	ACTAGT	1 cut(s)	205
AjnI	CCWGG	1 cut(s)	508
AluBI	AGCT	2 cut(s)	107, 373
AluI	AGCT	2 cut(s)	107, 373
AlwI	GGATC	1 cut(s)	541
ApoI	RAATTY	1 cut(s)	179
AseI	ATTAAT	2 cut(s)	8, 561
Asp700I	GAANNNNTTC	1 cut(s)	329
AspLEI	GCGC	1 cut(s)	404
AsuHPI	GGTGA	1 cut(s)	18
AsuII	TTCGAA	1 cut(s)	390
BccI	CCATC	7 cut(s)	31, 37, 44, 77, 143, 437, 532
BciT130I	CCWGG	1 cut(s)	510
BcuI	ACTAGT	1 cut(s)	205
BfaI	CTAG	1 cut(s)	206
BisI	GCNGC	1 cut(s)	222
BlsI	GCNGC	1 cut(s)	223
BmcAI	AGTACT	1 cut(s)	53
Bme1390I	CCNGG	1 cut(s)	510
BmrFI	CCNGG	1 cut(s)	510
BmsI	GCATC	1 cut(s)	135
Bpu10I	CCTNAGC	1 cut(s)	103
Bpu14I	TTCGAA	1 cut(s)	390
Bsc4I	CCNNNNNNNGG	1 cut(s)	247
Bse3DI	GCAATG	2 cut(s)	487, 528
BseBI	CCWGG	1 cut(s)	510
BseGI	GGATG	2 cut(s)	126, 524
BseLI	CCNNNNNNNGG	1 cut(s)	247
BseMI	GCAATG	2 cut(s)	487, 528
BseMII	CTCAG	1 cut(s)	279
BseRI	GAGGAG	1 cut(s)	412
BslI	CCNNNNNNNGG	1 cut(s)	247
BsmI	GAATGC	1 cut(s)	361
Bsp119I	TTCGAA	1 cut(s)	390
Bsp1407I	TGTACA	1 cut(s)	213
Bsp143I	GATC	2 cut(s)	395, 546
BspACI	CCGC	1 cut(s)	222
BspCNI	CTCAG	1 cut(s)	278
BspHI	TCATGA	1 cut(s)	196
BspPI	GGATC	1 cut(s)	541
BspT104I	TTCGAA	1 cut(s)	390
BsrDI	GCAATG	2 cut(s)	487, 528
BsrGI	TGTACA	1 cut(s)	213
BssMI	GATC	2 cut(s)	395, 546
Bst2UI	CCWGG	1 cut(s)	510
Bst4CI	ACNGT	3 cut(s)	56, 303, 460
BstAUI	TGTACA	1 cut(s)	213
BstBI	TTCGAA	1 cut(s)	390
BstDEI	CTNAG	5 cut(s)	48, 103, 265, 334, 414
BstF5I	GGATG	2 cut(s)	126, 524
BstHHI	GCGC	1 cut(s)	404
BstKTI	GATC	2 cut(s)	398, 549
BstMBI	GATC	2 cut(s)	395, 546
BstMWI	GCNNNNNNNGC	1 cut(s)	410
BstNI	CCWGG	1 cut(s)	510
BstSCI	CCNGG	1 cut(s)	508
BtsCI	GGATG	2 cut(s)	126, 524
BtsIMutI	CAGTG	1 cut(s)	273
CciI	TCATGA	1 cut(s)	196
CfoI	GCGC	1 cut(s)	404
Csp6I	GTAC	2 cut(s)	52, 214
CspCI	CAANNNNNGTGG	4 cut(s)	415, 450, 523, 558
CviAII	CATG	3 cut(s)	197, 293, 493
CviJI	RGCY	3 cut(s)	45, 107, 373
CviKI_1	RGCY	3 cut(s)	45, 107, 373
CviQI	GTAC	2 cut(s)	52, 214
DdeI	CTNAG	5 cut(s)	48, 103, 265, 334, 414
DpnI	GATC	2 cut(s)	397, 548
DpnII	GATC	2 cut(s)	395, 546
EcoRII	CCWGG	1 cut(s)	508
EcoT22I	ATGCAT	1 cut(s)	447
FaeI	CATG	3 cut(s)	200, 296, 496
FaiI	YATR	6 cut(s)	198, 294, 409, 411, 447, 494
FatI	CATG	3 cut(s)	196, 292, 492
Fnu4HI	GCNGC	1 cut(s)	222
FokI	GGATG	2 cut(s)	113, 511
Fsp4HI	GCNGC	1 cut(s)	222
FspBI	CTAG	1 cut(s)	206
GlaI	GCGC	1 cut(s)	403
GluI	GCNGC	1 cut(s)	222
HhaI	GCGC	1 cut(s)	404
Hin1II	CATG	3 cut(s)	200, 296, 496
Hin6I	GCGC	1 cut(s)	402
HinP1I	GCGC	1 cut(s)	402
HphI	GGTGA	1 cut(s)	18
Hpy188I	TCNGA	3 cut(s)	89, 167, 500
Hpy188III	TCNNGA	1 cut(s)	197
HpyAV	CCTTC	1 cut(s)	244
HpyCH4III	ACNGT	3 cut(s)	56, 303, 460
HpyCH4V	TGCA	2 cut(s)	359, 445
HpyF10VI	GCNNNNNNNGC	1 cut(s)	410
HpyF3I	CTNAG	5 cut(s)	48, 103, 265, 334, 414
Hsp92II	CATG	3 cut(s)	200, 296, 496
HspAI	GCGC	1 cut(s)	402
Kzo9I	GATC	2 cut(s)	395, 546
LmnI	GCTCC	1 cut(s)	167
LpnPI	CCDG	4 cut(s)	210, 375, 495, 522
LweI	GCATC	1 cut(s)	135
MaeI	CTAG	1 cut(s)	206
MalI	GATC	2 cut(s)	397, 548
MboI	GATC	2 cut(s)	395, 546
MfeI	CAATTG	1 cut(s)	81
MluCI	AATT	5 cut(s)	58, 81, 179, 382, 487
MmeI	TCCRAC	1 cut(s)	145
MnlI	CCTC	2 cut(s)	140, 433
Mph1103I	ATGCAT	1 cut(s)	447
MroXI	GAANNNNTTC	1 cut(s)	329
MseI	TTAA	4 cut(s)	8, 96, 369, 561
MspA1I	CMGCKG	1 cut(s)	224
MspR9I	CCNGG	1 cut(s)	510
MunI	CAATTG	1 cut(s)	81
Mva1269I	GAATGC	1 cut(s)	361
MvaI	CCWGG	1 cut(s)	510
MwoI	GCNNNNNNNGC	1 cut(s)	410
NdeII	GATC	2 cut(s)	395, 546
NlaIII	CATG	3 cut(s)	200, 296, 496
NsiI	ATGCAT	1 cut(s)	447
NspV	TTCGAA	1 cut(s)	390
PagI	TCATGA	1 cut(s)	196
PcsI	WCGNNNNNNNCGW	1 cut(s)	199
PctI	GAATGC	1 cut(s)	361
PdmI	GAANNNNTTC	1 cut(s)	329
PkrI	GCNGC	1 cut(s)	223
PshBI	ATTAAT	2 cut(s)	8, 561
Psp6I	CCWGG	1 cut(s)	508
PspGI	CCWGG	1 cut(s)	508
RsaI	GTAC	2 cut(s)	53, 215
RsaNI	GTAC	2 cut(s)	52, 214
SaqAI	TTAA	4 cut(s)	8, 96, 369, 561
SatI	GCNGC	1 cut(s)	222
Sau3AI	GATC	2 cut(s)	395, 546
ScaI	AGTACT	1 cut(s)	53
ScrFI	CCNGG	1 cut(s)	510
SetI	ASST	5 cut(s)	104, 109, 243, 364, 375
SfaNI	GCATC	1 cut(s)	135
SfuI	TTCGAA	1 cut(s)	390
SpeI	ACTAGT	1 cut(s)	205
Sse9I	AATT	5 cut(s)	58, 81, 179, 382, 487
SsiI	CCGC	1 cut(s)	222
SspMI	CTAG	1 cut(s)	206
StyD4I	CCNGG	1 cut(s)	508
TaaI	ACNGT	3 cut(s)	56, 303, 460
TaqI	TCGA	2 cut(s)	237, 390
TaqII	GACCGA	1 cut(s)	216
TasI	AATT	5 cut(s)	58, 81, 179, 382, 487
TatI	WGTACW	2 cut(s)	51, 213
TauI	GCSGC	1 cut(s)	224
Tru1I	TTAA	4 cut(s)	8, 96, 369, 561
Tru9I	TTAA	4 cut(s)	8, 96, 369, 561
TscAI	CASTG	1 cut(s)	273
TspDTI	ATGAA	1 cut(s)	481
TspRI	CASTG	1 cut(s)	273
VspI	ATTAAT	2 cut(s)	8, 561
XapI	RAATTY	1 cut(s)	179
XmnI	GAANNNNTTC	1 cut(s)	329
XspI	CTAG	1 cut(s)	206
ZrmI	AGTACT	1 cut(s)	53
Zsp2I	ATGCAT	1 cut(s)	447

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.