Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001888

Physical Location & Seq

Genomic Coordinates Forward (+)

6181373 .. 6182714

Gene Structure 1342 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g10350.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGCAACAAGCTACTGCACCACCATCTGATGCTAAAGCGAGCGCGAGCGCAGTTCCGGTAGCGTACGCTAATCCCACGGTTGCGATCATCAGCCCTAGTTTCTGCACTCCCTACCCCGTTGATCTTGGCATTGTCCGAAAAGTTCTGACCATAACCCATGGCAACTTTGTAGTCACGGATGTCAATGGCAACACTGTTTTCAAAGTGAAAGGAGCGCACTTAAGCTTACGTGACCGTCGAGTTTTACTTGATGCTGCTGGTTACCCCATTGTCACTTTCCGAAAGAAGTTGAGGTCGGTACATGAAAGATGGCAAGTTTTCAGGGGAGATAGCACAGAATTGAGTAATCTGGTATTTAGTGTTAAGATGTCTTCATGGATTCAGATGAAGACCAAATTGGATGTGTTCTTAGCAAGTAACACAAGAGAGGATGCACCTGACTTCCAAGTTAAAGGAAGTTGGTTTGAAAGATCTTGTGTTGTATATGCTGGCAACTCCTCCACTATTCTTGCACAGATGCACAAGAAGCACACAGTTTCAAGCGTGCTGTTTGGGAAGGACAATTTCAGTGTCACAGTATATCCTGGGGTTGACTACGCTTTCATCGTTGCTCTTATTGTCATCCTTGATGAGATCAATACTAATGATTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009725 GO:0009751 GO:0010033 GO:0014070 GO:0042221 GO:0042493 GO:0043207 GO:0046677 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0098542 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOR

Protein Analysis

218

Amino Acids

23.9

Weight (kDa)

9.23

Isoelectric Point (pI)

36.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LOR	PF04525	41 - 210	5e-51	LURP-one-related

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001888)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33840 AT1G33840 AT2G14560 AT2G14560 AT2G14560 AT2G14560 AT3G11740 AT5G01750 AT5G01750
fragaria_vesca	FvH4_6g10350 FvH4_6g10360 FvH4_6g10360
malus_domestica	MD04G1169400.v1.1 MD12G1182900.v1.1
prunus_persica	Prupe.6G287400_v2.0.a1 Prupe.6G287500_v2.0.a1 Prupe.6G287900_v2.0.a1
pyrus_communis	pycom04g15000 pycom12g17170
rosa_chinensis	RchiOBHm_Chr3g0461171 RchiOBHm_Chr3g0461181 RchiOBHm_Chr3g0461261
rosa_laevigata	RLG00000024947 RLG00000024948
rosa_multiflora	Rmu_sc0009344.1_g000007 Rmu_sc0009344.1_g000008
rosa_roxburghii	Rroxscaffold_6G00418740 Rroxscaffold_6G00418760 Rroxscaffold_6G00418810 Rroxscaffold_6G00418820
rosa_rugosa	Rorug03G0048800 Rorug03G0048800 Rorug03G0048900 Rorug03G0049300
rosa_samantha	Rh3AG106000 Rh3AG106100 Rh3BG110300 Rh3BG110400 Rh3BG110800 Rh3CG111900 Rh3CG112000 Rh3DG112100 Rh3DG112200 Rh3DG112600
rosa_wichuraiana	Rw3G009090 Rw3G009130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	44
AfaI	GTAC	2 cut(s)	65, 300
AflII	CTTAAG	1 cut(s)	220
AgsI	TTSAA	3 cut(s)	202, 467, 540
AjnI	CCWGG	1 cut(s)	583
AjuI	GAANNNNNNNTTGG	2 cut(s)	380, 412
AluBI	AGCT	2 cut(s)	11, 225
AluI	AGCT	2 cut(s)	11, 225
ApeKI	GCWGC	1 cut(s)	254
AspLEI	GCGC	3 cut(s)	44, 50, 217
BbsI	GAAGAC	2 cut(s)	363, 395
BbvI	GCAGC	1 cut(s)	241
BccI	CCATC	2 cut(s)	31, 303
BciT130I	CCWGG	1 cut(s)	585
BfaI	CTAG	1 cut(s)	96
BfrI	CTTAAG	1 cut(s)	220
BglII	AGATCT	1 cut(s)	470
BisI	GCNGC	1 cut(s)	255
BlsI	GCNGC	1 cut(s)	256
Bme1390I	CCNGG	1 cut(s)	585
BmrFI	CCNGG	1 cut(s)	585
BmsI	GCATC	4 cut(s)	19, 241, 421, 507
BpiI	GAAGAC	2 cut(s)	363, 395
BsaAI	YACGTR	1 cut(s)	230
BsaJI	CCNNGG	3 cut(s)	75, 157, 584
BsaWI	WCCGGW	1 cut(s)	55
BseBI	CCWGG	1 cut(s)	585
BseDI	CCNNGG	3 cut(s)	75, 157, 584
BseGI	GGATG	4 cut(s)	184, 406, 436, 621
BseRI	GAGGAG	1 cut(s)	487
BseXI	GCAGC	1 cut(s)	241
BsgI	GTGCAG	1 cut(s)	88
Bsh1236I	CGCG	1 cut(s)	44
BsiSI	CCGG	1 cut(s)	56
BsiWI	CGTACG	1 cut(s)	63
Bsp143I	GATC	4 cut(s)	84, 121, 470, 633
Bsp19I	CCATGG	1 cut(s)	157
BspFNI	CGCG	1 cut(s)	44
BspTI	CTTAAG	1 cut(s)	220
BssECI	CCNNGG	3 cut(s)	75, 157, 584
BssMI	GATC	4 cut(s)	84, 121, 470, 633
BssT1I	CCWWGG	1 cut(s)	157
Bst2UI	CCWGG	1 cut(s)	585
Bst4CI	ACNGT	5 cut(s)	79, 196, 236, 535, 577
BstAFI	CTTAAG	1 cut(s)	220
BstBAI	YACGTR	1 cut(s)	230
BstC8I	GCNNGC	4 cut(s)	40, 46, 490, 545
BstDEI	CTNAG	1 cut(s)	409
BstDSI	CCRYGG	2 cut(s)	75, 157
BstEII	GGTNACC	1 cut(s)	260
BstF5I	GGATG	4 cut(s)	184, 406, 436, 621
BstFNI	CGCG	1 cut(s)	44
BstHHI	GCGC	3 cut(s)	44, 50, 217
BstKTI	GATC	4 cut(s)	87, 124, 473, 636
BstMBI	GATC	4 cut(s)	84, 121, 470, 633
BstMWI	GCNNNNNNNGC	1 cut(s)	526
BstNI	CCWGG	1 cut(s)	585
BstPI	GGTNACC	1 cut(s)	260
BstSCI	CCNGG	1 cut(s)	583
BstUI	CGCG	1 cut(s)	44
BstV1I	GCAGC	1 cut(s)	241
BstV2I	GAAGAC	2 cut(s)	363, 395
BstX2I	RGATCY	1 cut(s)	470
BstYI	RGATCY	1 cut(s)	470
BtgI	CCRYGG	2 cut(s)	75, 157
BtsCI	GGATG	4 cut(s)	184, 406, 436, 621
BtsIMutI	CAGTG	2 cut(s)	192, 574
Cac8I	GCNNGC	4 cut(s)	40, 46, 490, 545
CfoI	GCGC	3 cut(s)	44, 50, 217
Csp6I	GTAC	2 cut(s)	64, 299
CspCI	CAANNNNNGTGG	2 cut(s)	490, 525
CviAII	CATG	3 cut(s)	158, 302, 375
CviJI	RGCY	3 cut(s)	11, 93, 225
CviKI_1	RGCY	3 cut(s)	11, 93, 225
CviQI	GTAC	2 cut(s)	64, 299
DdeI	CTNAG	1 cut(s)	409
DpnI	GATC	4 cut(s)	86, 123, 472, 635
DpnII	GATC	4 cut(s)	84, 121, 470, 633
Eco130I	CCWWGG	1 cut(s)	157
Eco91I	GGTNACC	1 cut(s)	260
EcoO65I	GGTNACC	1 cut(s)	260
EcoRII	CCWGG	1 cut(s)	583
EcoT14I	CCWWGG	1 cut(s)	157
ErhI	CCWWGG	1 cut(s)	157
FaeI	CATG	3 cut(s)	161, 305, 378
FaiI	YATR	7 cut(s)	152, 159, 303, 376, 484, 486, 580
FatI	CATG	3 cut(s)	157, 301, 374
Fnu4HI	GCNGC	1 cut(s)	255
FokI	GGATG	4 cut(s)	191, 413, 443, 608
Fsp4HI	GCNGC	1 cut(s)	255
FspBI	CTAG	1 cut(s)	96
GlaI	GCGC	3 cut(s)	43, 49, 216
GluI	GCNGC	1 cut(s)	255
HapII	CCGG	1 cut(s)	56
HhaI	GCGC	3 cut(s)	44, 50, 217
Hin1II	CATG	3 cut(s)	161, 305, 378
Hin6I	GCGC	3 cut(s)	42, 48, 215
HinP1I	GCGC	3 cut(s)	42, 48, 215
HincII	GTYRAC	1 cut(s)	592
HindII	GTYRAC	1 cut(s)	592
HindIII	AAGCTT	1 cut(s)	223
HinfI	GANTC	2 cut(s)	379, 647
HpaII	CCGG	1 cut(s)	56
Hpy166II	GTNNAC	1 cut(s)	592
Hpy188I	TCNGA	5 cut(s)	28, 137, 147, 281, 384
Hpy188III	TCNNGA	1 cut(s)	651
Hpy8I	GTNNAC	1 cut(s)	592
Hpy99I	CGWCG	1 cut(s)	240
HpyAV	CCTTC	1 cut(s)	550
HpyCH4III	ACNGT	5 cut(s)	79, 196, 236, 535, 577
HpyCH4IV	ACGT	1 cut(s)	229
HpyCH4V	TGCA	6 cut(s)	4, 17, 105, 434, 512, 520
HpyF10VI	GCNNNNNNNGC	1 cut(s)	526
HpyF3I	CTNAG	1 cut(s)	409
HpySE526I	ACGT	1 cut(s)	229
Hsp92II	CATG	3 cut(s)	161, 305, 378
HspAI	GCGC	3 cut(s)	42, 48, 215
Kzo9I	GATC	4 cut(s)	84, 121, 470, 633
LmnI	GCTCC	1 cut(s)	212
LpnPI	CCDG	8 cut(s)	69, 243, 307, 335, 450, 474, 570, 597
Lsp1109I	GCAGC	1 cut(s)	241
LweI	GCATC	4 cut(s)	19, 241, 421, 507
MaeI	CTAG	1 cut(s)	96
MaeII	ACGT	1 cut(s)	229
MaeIII	GTNAC	6 cut(s)	172, 230, 260, 271, 416, 571
MalI	GATC	4 cut(s)	86, 123, 472, 635
MboI	GATC	4 cut(s)	84, 121, 470, 633
MboII	GAAGA	2 cut(s)	363, 400
MflI	RGATCY	1 cut(s)	470
MluCI	AATT	3 cut(s)	338, 395, 562
MnlI	CCTC	3 cut(s)	285, 421, 508
MseI	TTAA	3 cut(s)	221, 363, 450
MspCI	CTTAAG	1 cut(s)	220
MspI	CCGG	1 cut(s)	56
MspR9I	CCNGG	1 cut(s)	585
MvaI	CCWGG	1 cut(s)	585
MvnI	CGCG	1 cut(s)	44
MwoI	GCNNNNNNNGC	1 cut(s)	526
NcoI	CCATGG	1 cut(s)	157
NdeII	GATC	4 cut(s)	84, 121, 470, 633
NlaIII	CATG	3 cut(s)	161, 305, 378
NmuCI	GTSAC	4 cut(s)	172, 230, 271, 571
PcsI	WCGNNNNNNNCGW	2 cut(s)	235, 603
PfeI	GAWTC	2 cut(s)	379, 647
Pfl23II	CGTACG	1 cut(s)	63
PkrI	GCNGC	1 cut(s)	256
Ppu21I	YACGTR	1 cut(s)	230
Psp6I	CCWGG	1 cut(s)	583
PspEI	GGTNACC	1 cut(s)	260
PspGI	CCWGG	1 cut(s)	583
PspLI	CGTACG	1 cut(s)	63
PsuI	RGATCY	1 cut(s)	470
RsaI	GTAC	2 cut(s)	65, 300
RsaNI	GTAC	2 cut(s)	64, 299
SaqAI	TTAA	3 cut(s)	221, 363, 450
SatI	GCNGC	1 cut(s)	255
Sau3AI	GATC	4 cut(s)	84, 121, 470, 633
ScrFI	CCNGG	1 cut(s)	585
SetI	ASST	5 cut(s)	13, 227, 232, 296, 439
SfaNI	GCATC	4 cut(s)	19, 241, 421, 507
SmlI	CTYRAG	1 cut(s)	220
SmoI	CTYRAG	1 cut(s)	220
Sse9I	AATT	3 cut(s)	338, 395, 562
SspMI	CTAG	1 cut(s)	96
StyD4I	CCNGG	1 cut(s)	583
StyI	CCWWGG	1 cut(s)	157
TaaI	ACNGT	5 cut(s)	79, 196, 236, 535, 577
TaiI	ACGT	1 cut(s)	232
TaqI	TCGA	1 cut(s)	238
TasI	AATT	3 cut(s)	338, 395, 562
TfiI	GAWTC	2 cut(s)	379, 647
Tru1I	TTAA	3 cut(s)	221, 363, 450
Tru9I	TTAA	3 cut(s)	221, 363, 450
TscAI	CASTG	2 cut(s)	199, 574
TseFI	GTSAC	4 cut(s)	172, 230, 271, 571
TseI	GCWGC	1 cut(s)	254
Tsp45I	GTSAC	4 cut(s)	172, 230, 271, 571
TspDTI	ATGAA	4 cut(s)	318, 363, 401, 592
TspGWI	ACGGA	1 cut(s)	191
TspRI	CASTG	2 cut(s)	199, 574
Vha464I	CTTAAG	1 cut(s)	220
XspI	CTAG	1 cut(s)	96

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.