Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0001888

Physical Location & Seq

Genomic Coordinates Forward (+)

40342388 .. 40343806

Gene Structure 1419 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00418760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGTTTAGCACGACTTTTCTCGCTATATACCTTTGCTCCGGAAACTTTGTAATCAAGGATATCTATGGTAATATCATTTTCGTAGTGGATAAAAGTCTAAAACATTTTCCTGGTTTGGTGACAAGCGAACCTTACTTGATGCTGCTGGAAATCCAATTATTACTCAAGTTCATCCACGAATGGAACGTTTATAGGGGCAGTAGCAACGAACCAAGTGATCTGGTTTTTAGTGCAATCAAATCTTCAATGTTTCAGTTCAATACAAGGTTGCATATTTTCTTAGCAAGAAACACCACAATGAATGCGCCTGATTTCAAGGTTAAGGGAAGCTGGCTCCAACGATCCTGCCTCATATATGCGGGGGACTCTTCCATCATCATTGCCCAAATGCATAAGAAGGACACAGTTCAAAGTGTGCTGTTTGGCAAGGACAATTTCATGGTCAGAGTATGTCCTGGTATTGACTATGCATCCATTGCCGCGCTTATTGTGATCCTTGATGCGATTAATGGTGATAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009725 GO:0009751 GO:0010033 GO:0014070 GO:0042221 GO:0042493 GO:0043207 GO:0046677 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0098542 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOR

Protein Analysis

173

Amino Acids

19.56

Weight (kDa)

8.43

Isoelectric Point (pI)

32.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LOR	PF04525	13 - 167	1.6e-32	LURP-one-related

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0001888)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33840 AT1G33840 AT2G14560 AT2G14560 AT2G14560 AT2G14560 AT3G11740 AT5G01750 AT5G01750
fragaria_vesca	FvH4_6g10350 FvH4_6g10360 FvH4_6g10360
malus_domestica	MD04G1169400.v1.1 MD12G1182900.v1.1
prunus_persica	Prupe.6G287400_v2.0.a1 Prupe.6G287500_v2.0.a1 Prupe.6G287900_v2.0.a1
pyrus_communis	pycom04g15000 pycom12g17170
rosa_chinensis	RchiOBHm_Chr3g0461171 RchiOBHm_Chr3g0461181 RchiOBHm_Chr3g0461261
rosa_laevigata	RLG00000024947 RLG00000024948
rosa_multiflora	Rmu_sc0009344.1_g000007 Rmu_sc0009344.1_g000008
rosa_roxburghii	Rroxscaffold_6G00418740 Rroxscaffold_6G00418760 Rroxscaffold_6G00418810 Rroxscaffold_6G00418820
rosa_rugosa	Rorug03G0048800 Rorug03G0048800 Rorug03G0048900 Rorug03G0049300
rosa_samantha	Rh3AG106000 Rh3AG106100 Rh3BG110300 Rh3BG110400 Rh3BG110800 Rh3CG111900 Rh3CG112000 Rh3DG112100 Rh3DG112200 Rh3DG112600
rosa_wichuraiana	Rw3G009090 Rw3G009130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	482
AccIII	TCCGGA	1 cut(s)	38
AciI	CCGC	2 cut(s)	359, 480
AclI	AACGTT	1 cut(s)	186
AclWI	GGATC	2 cut(s)	336, 487
AgsI	TTSAA	4 cut(s)	246, 259, 316, 410
AjnI	CCWGG	2 cut(s)	109, 454
AluBI	AGCT	1 cut(s)	330
AluI	AGCT	1 cut(s)	330
AlwI	GGATC	2 cut(s)	336, 487
Aor13HI	TCCGGA	1 cut(s)	38
ApeKI	GCWGC	1 cut(s)	142
AseI	ATTAAT	1 cut(s)	507
AspLEI	GCGC	2 cut(s)	307, 484
AsuHPI	GGTGA	1 cut(s)	130
BbvI	GCAGC	1 cut(s)	129
BccI	CCATC	1 cut(s)	380
BciT130I	CCWGG	2 cut(s)	111, 456
BisI	GCNGC	2 cut(s)	143, 480
BlsI	GCNGC	2 cut(s)	144, 481
Bme1390I	CCNGG	2 cut(s)	111, 456
BmiI	GGNNCC	1 cut(s)	335
BmrFI	CCNGG	2 cut(s)	111, 456
BmsI	GCATC	3 cut(s)	129, 479, 490
BpuEI	CTTGAG	1 cut(s)	149
BsaWI	WCCGGW	1 cut(s)	38
BsaXI	ACNNNNNCTCC	2 cut(s)	20, 50
Bse3DI	GCAATG	2 cut(s)	378, 474
BseAI	TCCGGA	1 cut(s)	38
BseBI	CCWGG	2 cut(s)	111, 456
BseGI	GGATG	2 cut(s)	171, 470
BseMI	GCAATG	2 cut(s)	378, 474
BseXI	GCAGC	1 cut(s)	129
Bsh1236I	CGCG	1 cut(s)	482
BsiSI	CCGG	1 cut(s)	39
BslFI	GGGAC	1 cut(s)	377
BsmFI	GGGAC	1 cut(s)	377
BsmI	GAATGC	1 cut(s)	307
Bsp13I	TCCGGA	1 cut(s)	38
Bsp143I	GATC	3 cut(s)	217, 341, 492
BspACI	CCGC	2 cut(s)	359, 480
BspEI	TCCGGA	1 cut(s)	38
BspFNI	CGCG	1 cut(s)	482
BspLI	GGNNCC	1 cut(s)	335
BspPI	GGATC	2 cut(s)	336, 487
BsrDI	GCAATG	2 cut(s)	378, 474
BssMI	GATC	3 cut(s)	217, 341, 492
Bst2UI	CCWGG	2 cut(s)	111, 456
Bst4CI	ACNGT	1 cut(s)	406
Bst6I	CTCTTC	1 cut(s)	373
BstAPI	GCANNNNNTGC	1 cut(s)	476
BstC8I	GCNNGC	1 cut(s)	332
BstDEI	CTNAG	1 cut(s)	280
BstF5I	GGATG	2 cut(s)	171, 470
BstFNI	CGCG	1 cut(s)	482
BstHHI	GCGC	2 cut(s)	307, 484
BstKTI	GATC	3 cut(s)	220, 344, 495
BstMBI	GATC	3 cut(s)	217, 341, 492
BstMWI	GCNNNNNNNGC	1 cut(s)	476
BstNI	CCWGG	2 cut(s)	111, 456
BstSCI	CCNGG	2 cut(s)	109, 454
BstUI	CGCG	1 cut(s)	482
BstV1I	GCAGC	1 cut(s)	129
BtsCI	GGATG	2 cut(s)	171, 470
Cac8I	GCNNGC	1 cut(s)	332
CfoI	GCGC	2 cut(s)	307, 484
CviAII	CATG	1 cut(s)	439
CviJI	RGCY	2 cut(s)	330, 334
CviKI_1	RGCY	2 cut(s)	330, 334
DdeI	CTNAG	1 cut(s)	280
DpnI	GATC	3 cut(s)	219, 343, 494
DpnII	GATC	3 cut(s)	217, 341, 492
Eam1104I	CTCTTC	1 cut(s)	373
EarI	CTCTTC	1 cut(s)	373
Eco32I	GATATC	1 cut(s)	61
EcoRII	CCWGG	2 cut(s)	109, 454
EcoRV	GATATC	1 cut(s)	61
EcoT22I	ATGCAT	2 cut(s)	393, 472
FaeI	CATG	1 cut(s)	442
FalI	AAGNNNNNCTT	2 cut(s)	115, 147
FaqI	GGGAC	1 cut(s)	377
FatI	CATG	1 cut(s)	438
FauI	CCCGC	1 cut(s)	352
Fnu4HI	GCNGC	2 cut(s)	143, 480
FokI	GGATG	2 cut(s)	158, 457
Fsp4HI	GCNGC	2 cut(s)	143, 480
GlaI	GCGC	2 cut(s)	306, 483
GluI	GCNGC	2 cut(s)	143, 480
HapII	CCGG	1 cut(s)	39
HhaI	GCGC	2 cut(s)	307, 484
Hin1II	CATG	1 cut(s)	442
Hin6I	GCGC	2 cut(s)	305, 482
HinP1I	GCGC	2 cut(s)	305, 482
HinfI	GANTC	1 cut(s)	365
HpaII	CCGG	1 cut(s)	39
HphI	GGTGA	1 cut(s)	130
Hpy188I	TCNGA	1 cut(s)	446
Hpy188III	TCNNGA	1 cut(s)	39
HpyAV	CCTTC	1 cut(s)	391
HpyCH4III	ACNGT	1 cut(s)	406
HpyCH4IV	ACGT	1 cut(s)	186
HpyCH4V	TGCA	4 cut(s)	233, 271, 391, 470
HpyF10VI	GCNNNNNNNGC	1 cut(s)	476
HpyF3I	CTNAG	1 cut(s)	280
HpySE526I	ACGT	1 cut(s)	186
Hsp92II	CATG	1 cut(s)	442
HspAI	GCGC	2 cut(s)	305, 482
Kpn2I	TCCGGA	1 cut(s)	38
Kzo9I	GATC	3 cut(s)	217, 341, 492
LmnI	GCTCC	2 cut(s)	41, 339
Lsp1109I	GCAGC	1 cut(s)	129
LweI	GCATC	3 cut(s)	129, 479, 490
MaeII	ACGT	1 cut(s)	186
MaeIII	GTNAC	1 cut(s)	118
MalI	GATC	3 cut(s)	219, 343, 494
MboI	GATC	3 cut(s)	217, 341, 492
MboII	GAAGA	2 cut(s)	234, 360
MluCI	AATT	2 cut(s)	155, 433
MlyI	GAGTC	1 cut(s)	359
MmeI	TCCRAC	1 cut(s)	361
MnlI	CCTC	1 cut(s)	359
Mph1103I	ATGCAT	2 cut(s)	393, 472
MroI	TCCGGA	1 cut(s)	38
MseI	TTAA	2 cut(s)	321, 507
MslI	CAYNNNNRTG	1 cut(s)	296
MspI	CCGG	1 cut(s)	39
MspR9I	CCNGG	2 cut(s)	111, 456
Mva1269I	GAATGC	1 cut(s)	307
MvaI	CCWGG	2 cut(s)	111, 456
MvnI	CGCG	1 cut(s)	482
MwoI	GCNNNNNNNGC	1 cut(s)	476
NdeII	GATC	3 cut(s)	217, 341, 492
NlaIII	CATG	1 cut(s)	442
NlaIV	GGNNCC	1 cut(s)	335
NmuCI	GTSAC	1 cut(s)	118
NsiI	ATGCAT	2 cut(s)	393, 472
PcsI	WCGNNNNNNNCGW	1 cut(s)	183
PctI	GAATGC	1 cut(s)	307
PkrI	GCNGC	2 cut(s)	144, 481
PleI	GAGTC	1 cut(s)	359
PpsI	GAGTC	1 cut(s)	359
PshBI	ATTAAT	1 cut(s)	507
Psp1406I	AACGTT	1 cut(s)	186
Psp6I	CCWGG	2 cut(s)	109, 454
PspGI	CCWGG	2 cut(s)	109, 454
PspN4I	GGNNCC	1 cut(s)	335
RseI	CAYNNNNRTG	1 cut(s)	296
SaqAI	TTAA	2 cut(s)	321, 507
SatI	GCNGC	2 cut(s)	143, 480
Sau3AI	GATC	3 cut(s)	217, 341, 492
SchI	GAGTC	1 cut(s)	359
ScrFI	CCNGG	2 cut(s)	111, 456
SetI	ASST	6 cut(s)	33, 133, 189, 269, 321, 332
SfaNI	GCATC	3 cut(s)	129, 479, 490
SmiMI	CAYNNNNRTG	1 cut(s)	296
SmlI	CTYRAG	1 cut(s)	164
SmoI	CTYRAG	1 cut(s)	164
Sse9I	AATT	2 cut(s)	155, 433
SsiI	CCGC	2 cut(s)	359, 480
StyD4I	CCNGG	2 cut(s)	109, 454
TaaI	ACNGT	1 cut(s)	406
TaiI	ACGT	1 cut(s)	189
TasI	AATT	2 cut(s)	155, 433
TauI	GCSGC	1 cut(s)	482
Tru1I	TTAA	2 cut(s)	321, 507
Tru9I	TTAA	2 cut(s)	321, 507
TseFI	GTSAC	1 cut(s)	118
TseI	GCWGC	1 cut(s)	142
Tsp45I	GTSAC	1 cut(s)	118
TspDTI	ATGAA	3 cut(s)	160, 314, 427
VspI	ATTAAT	1 cut(s)	507
Zsp2I	ATGCAT	2 cut(s)	393, 472

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.