AT5G01750

LURP-one-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0001888
Physical Location & Seq
Forward (+)
289717 .. 291604
1888 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G01750.2

Sequence Viewer

Length: 525 bp
ATGGAGCAGCCGTACGTGTACGCATACCCGCAAGGTAGTGGCCCCTCGGGAGCTCCGACTCCACAAGCCGGAGGAGTGGTAGTGGATCCAAAGTACTGCGCTCCTTACCCTATAGATATGGCGATCGTACGGAAGATGATGTCGTTAACGGACGGCAATTTCGTGATAACGGACGTCAACGGAAACCTGCTGTTCAAGGTGAAGGAACCGGTGTTTGGTCTCCACGACAAGAGGGTCTTGCTGGATGGTTCTGGTACTCCGGTCGTCACTTTGAGAGAAAAGATGGTGAGCATGCATGACAGGTGGCAAGTGTTTAGAGGAGGGAGTACGGATCAGCGTGATCTGCTGTACACGGTGAAAAGATCGTCGATGCTTCAGCTAAAGACCAAACTCGATGTGTTTTTGGGACACAACAAAGATGAGAAGAGATGTGATTTCAGAGTCAAAGGGAGTTGGCTCGAGCGTTCTTGTGTTGTTTACGCCGGCGAATCTGACGCCATTGTTGCCCAAGTATACTATCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0019904 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOR

Protein Analysis

174

Amino Acids

19.5

Weight (kDa)

8.7

Isoelectric Point (pI)

48.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOR PF04525 39 - 208 4.3e-52 LURP-one-related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 233
AatII GACGTC 1 cut(s) 177
Acc36I ACCTGC 1 cut(s) 195
AccI GTMKAC 1 cut(s) 513
AciI CCGC 1 cut(s) 29
AclWI GGATC 3 cut(s) 80, 93, 339
AcuI CTGAAG 1 cut(s) 359
AcyI GRCGYC 2 cut(s) 174, 495
AfaI GTAC 7 cut(s) 14, 20, 95, 129, 256, 328, 350
AfiI CCNNNNNNNGG 2 cut(s) 68, 215
AflIII ACRYGT 1 cut(s) 15
AgeI ACCGGT 1 cut(s) 208
AgsI TTSAA 1 cut(s) 196
AjuI GAANNNNNNNTTGG 2 cut(s) 198, 230
AluBI AGCT 2 cut(s) 53, 379
AluI AGCT 2 cut(s) 53, 379
Alw21I GWGCWC 1 cut(s) 55
Alw26I GTCTC 1 cut(s) 224
AlwI GGATC 3 cut(s) 80, 93, 339
Ama87I CYCGRG 2 cut(s) 46, 458
AoxI GGCC 1 cut(s) 40
ApeKI GCWGC 1 cut(s) 7
ArsI GACNNNNNNTTYG 2 cut(s) 143, 175
AsiGI ACCGGT 1 cut(s) 208
AspLEI GCGC 1 cut(s) 101
AspS9I GGNCC 1 cut(s) 41
AsuHPI GGTGA 3 cut(s) 211, 298, 367
AvaI CYCGRG 2 cut(s) 46, 458
BaeI ACNNNNGTAYC 2 cut(s) 246, 279
BamHI GGATCC 1 cut(s) 85
BanII GRGCYC 1 cut(s) 55
Bbv12I GWGCWC 1 cut(s) 55
BbvI GCAGC 1 cut(s) 19
BccI CCATC 2 cut(s) 239, 277
BceAI ACGGC 1 cut(s) 169
BcoDI GTCTC 1 cut(s) 224
BfmI CTRYAG 1 cut(s) 111
BfuAI ACCTGC 1 cut(s) 195
BisI GCNGC 1 cut(s) 8
BlsI GCNGC 1 cut(s) 9
BmcAI AGTACT 1 cut(s) 95
BmeT110I CYCGRG 2 cut(s) 46, 458
BmgT120I GGNCC 1 cut(s) 41
BmiI GGNNCC 3 cut(s) 43, 87, 207
BmsI GCATC 1 cut(s) 360
BsaAI YACGTR 1 cut(s) 16
BsaHI GRCGYC 2 cut(s) 174, 495
BsaI GGTCTC 1 cut(s) 224
BsaJI CCNNGG 1 cut(s) 45
BsaWI WCCGGW 2 cut(s) 208, 259
BsaXI ACNNNNNCTCC 5 cut(s) 26, 63, 66, 93, 96
Bsc4I CCNNNNNNNGG 2 cut(s) 68, 215
Bse118I RCCGGY 2 cut(s) 208, 482
BseDI CCNNGG 1 cut(s) 45
BseGI GGATG 1 cut(s) 250
BseLI CCNNNNNNNGG 2 cut(s) 68, 215
BseRI GAGGAG 2 cut(s) 87, 333
BseXI GCAGC 1 cut(s) 19
Bsh1285I CGRYCG 2 cut(s) 126, 264
BshFI GGCC 1 cut(s) 42
BshTI ACCGGT 1 cut(s) 208
BsiEI CGRYCG 2 cut(s) 126, 264
BsiHKAI GWGCWC 1 cut(s) 55
BsiHKCI CYCGRG 2 cut(s) 46, 458
BsiSI CCGG 4 cut(s) 69, 209, 260, 483
BsiWI CGTACG 2 cut(s) 12, 127
BslFI GGGAC 1 cut(s) 420
BslI CCNNNNNNNGG 2 cut(s) 68, 215
BsmAI GTCTC 1 cut(s) 224
BsmFI GGGAC 1 cut(s) 420
BsnI GGCC 1 cut(s) 42
Bso31I GGTCTC 1 cut(s) 224
BsoBI CYCGRG 2 cut(s) 46, 458
Bsp1286I GDGCHC 1 cut(s) 55
Bsp1407I TGTACA 1 cut(s) 348
Bsp143I GATC 5 cut(s) 85, 123, 331, 340, 362
BspACI CCGC 1 cut(s) 29
BspANI GGCC 1 cut(s) 42
BspLI GGNNCC 3 cut(s) 43, 87, 207
BspMI ACCTGC 1 cut(s) 195
BspPI GGATC 3 cut(s) 80, 93, 339
BspTNI GGTCTC 1 cut(s) 224
BsrFI RCCGGY 2 cut(s) 208, 482
BsrGI TGTACA 1 cut(s) 348
BssAI RCCGGY 2 cut(s) 208, 482
BssECI CCNNGG 1 cut(s) 45
BssMI GATC 5 cut(s) 85, 123, 331, 340, 362
BssNAI GTATAC 1 cut(s) 514
BssNI GRCGYC 2 cut(s) 174, 495
Bst1107I GTATAC 1 cut(s) 514
Bst4CI ACNGT 1 cut(s) 355
Bst6I CTCTTC 1 cut(s) 419
BstACI GRCGYC 2 cut(s) 174, 495
BstAUI TGTACA 1 cut(s) 348
BstBAI YACGTR 1 cut(s) 16
BstC8I GCNNGC 2 cut(s) 293, 484
BstF5I GGATG 1 cut(s) 250
BstHHI GCGC 1 cut(s) 101
BstKTI GATC 5 cut(s) 88, 126, 334, 343, 365
BstMAI GTCTC 1 cut(s) 224
BstMBI GATC 5 cut(s) 85, 123, 331, 340, 362
BstMCI CGRYCG 2 cut(s) 126, 264
BstMWI GCNNNNNNNGC 2 cut(s) 343, 503
BstNSI RCATGY 1 cut(s) 295
BstSFI CTRYAG 1 cut(s) 111
BstV1I GCAGC 1 cut(s) 19
BstX2I RGATCY 1 cut(s) 85
BstYI RGATCY 1 cut(s) 85
BstZ17I GTATAC 1 cut(s) 514
BsuRI GGCC 1 cut(s) 42
BtsCI GGATG 1 cut(s) 250
BveI ACCTGC 1 cut(s) 195
Cac8I GCNNGC 2 cut(s) 293, 484
CfoI GCGC 1 cut(s) 101
Cfr10I RCCGGY 2 cut(s) 208, 482
Cfr13I GGNCC 1 cut(s) 41
CseI GACGC 1 cut(s) 503
Csp6I GTAC 7 cut(s) 13, 19, 94, 128, 255, 327, 349
CspAI ACCGGT 1 cut(s) 208
CviAII CATG 2 cut(s) 292, 296
CviJI RGCY 6 cut(s) 10, 42, 53, 68, 379, 457
CviKI_1 RGCY 6 cut(s) 10, 42, 53, 68, 379, 457
CviQI GTAC 7 cut(s) 13, 19, 94, 128, 255, 327, 349
DpnI GATC 5 cut(s) 87, 125, 333, 342, 364
DpnII GATC 5 cut(s) 85, 123, 331, 340, 362
DrdI GACNNNNNNGTC 1 cut(s) 233
DseDI GACNNNNNNGTC 1 cut(s) 233
Eam1104I CTCTTC 1 cut(s) 419
EarI CTCTTC 1 cut(s) 419
Ecl136II GAGCTC 1 cut(s) 53
Eco24I GRGCYC 1 cut(s) 55
Eco31I GGTCTC 1 cut(s) 224
Eco53kI GAGCTC 1 cut(s) 53
Eco57I CTGAAG 1 cut(s) 359
Eco88I CYCGRG 2 cut(s) 46, 458
EcoICRI GAGCTC 1 cut(s) 53
EcoT22I ATGCAT 1 cut(s) 297
EcoT38I GRGCYC 1 cut(s) 55
FaeI CATG 2 cut(s) 295, 299
FaiI YATR 6 cut(s) 25, 113, 119, 293, 297, 514
FalI AAGNNNNNCTT 2 cut(s) 221, 253
FaqI GGGAC 1 cut(s) 420
FatI CATG 2 cut(s) 291, 295
FauI CCCGC 1 cut(s) 36
FblI GTMKAC 1 cut(s) 513
Fnu4HI GCNGC 1 cut(s) 8
FokI GGATG 1 cut(s) 257
FriOI GRGCYC 1 cut(s) 55
Fsp4HI GCNGC 1 cut(s) 8
GlaI GCGC 1 cut(s) 100
GluI GCNGC 1 cut(s) 8
HaeIII GGCC 1 cut(s) 42
HapII CCGG 4 cut(s) 69, 209, 260, 483
HgaI GACGC 1 cut(s) 503
HhaI GCGC 1 cut(s) 101
Hin1I GRCGYC 2 cut(s) 174, 495
Hin1II CATG 2 cut(s) 295, 299
Hin6I GCGC 1 cut(s) 99
HinP1I GCGC 1 cut(s) 99
HincII GTYRAC 2 cut(s) 147, 178
HindII GTYRAC 2 cut(s) 147, 178
HinfI GANTC 3 cut(s) 58, 441, 488
HpaI GTTAAC 1 cut(s) 147
HpaII CCGG 4 cut(s) 69, 209, 260, 483
HphI GGTGA 3 cut(s) 211, 298, 367
Hpy166II GTNNAC 6 cut(s) 19, 147, 178, 351, 478, 514
Hpy188I TCNGA 3 cut(s) 57, 440, 493
Hpy188III TCNNGA 2 cut(s) 48, 163
Hpy8I GTNNAC 6 cut(s) 19, 147, 178, 351, 478, 514
Hpy99I CGWCG 1 cut(s) 370
HpyAV CCTTC 1 cut(s) 196
HpyCH4III ACNGT 1 cut(s) 355
HpyCH4IV ACGT 2 cut(s) 15, 174
HpyCH4V TGCA 1 cut(s) 295
HpyF10VI GCNNNNNNNGC 2 cut(s) 343, 503
HpySE526I ACGT 2 cut(s) 15, 174
Hsp92I GRCGYC 2 cut(s) 174, 495
Hsp92II CATG 2 cut(s) 295, 299
HspAI GCGC 1 cut(s) 99
KroI GCCGGC 1 cut(s) 482
KroNI GCCGGC 1 cut(s) 484
KspAI GTTAAC 1 cut(s) 147
Kzo9I GATC 5 cut(s) 85, 123, 331, 340, 362
LmnI GCTCC 4 cut(s) 4, 50, 58, 106
LpnPI CCDG 8 cut(s) 82, 200, 222, 227, 237, 273, 286, 496
Lsp1109I GCAGC 1 cut(s) 19
LweI GCATC 1 cut(s) 360
MaeII ACGT 2 cut(s) 15, 174
MaeIII GTNAC 1 cut(s) 265
MalI GATC 5 cut(s) 87, 125, 333, 342, 364
MboI GATC 5 cut(s) 85, 123, 331, 340, 362
MboII GAAGA 2 cut(s) 145, 436
MflI RGATCY 1 cut(s) 85
MhlI GDGCHC 1 cut(s) 55
MluCI AATT 1 cut(s) 157
MlyI GAGTC 2 cut(s) 52, 450
MmeI TCCRAC 1 cut(s) 80
MnlI CCTC 5 cut(s) 55, 65, 225, 311, 314
Mph1103I ATGCAT 1 cut(s) 297
MreI CGCCGGCG 1 cut(s) 482
MroNI GCCGGC 1 cut(s) 482
MseI TTAA 1 cut(s) 146
MspI CCGG 4 cut(s) 69, 209, 260, 483
MwoI GCNNNNNNNGC 2 cut(s) 343, 503
NaeI GCCGGC 1 cut(s) 484
NdeII GATC 5 cut(s) 85, 123, 331, 340, 362
NgoMIV GCCGGC 1 cut(s) 482
NlaIII CATG 2 cut(s) 295, 299
NlaIV GGNNCC 3 cut(s) 43, 87, 207
NmuCI GTSAC 1 cut(s) 265
NsiI ATGCAT 1 cut(s) 297
NspI RCATGY 1 cut(s) 295
PaeI GCATGC 1 cut(s) 295
PaeR7I CTCGAG 1 cut(s) 458
PcsI WCGNNNNNNNCGW 2 cut(s) 53, 159
PdiI GCCGGC 1 cut(s) 484
PfeI GAWTC 1 cut(s) 488
Pfl23II CGTACG 2 cut(s) 12, 127
PinAI ACCGGT 1 cut(s) 208
PkrI GCNGC 1 cut(s) 9
Ple19I CGATCG 1 cut(s) 126
PleI GAGTC 2 cut(s) 52, 449
PpsI GAGTC 2 cut(s) 52, 449
Ppu21I YACGTR 1 cut(s) 16
Psp124BI GAGCTC 1 cut(s) 55
PspLI CGTACG 2 cut(s) 12, 127
PspN4I GGNNCC 3 cut(s) 43, 87, 207
PspPI GGNCC 1 cut(s) 41
PspXI VCTCGAGB 1 cut(s) 458
PsuI RGATCY 1 cut(s) 85
PvuI CGATCG 1 cut(s) 126
RsaI GTAC 7 cut(s) 14, 20, 95, 129, 256, 328, 350
RsaNI GTAC 7 cut(s) 13, 19, 94, 128, 255, 327, 349
SacI GAGCTC 1 cut(s) 55
SaqAI TTAA 1 cut(s) 146
SatI GCNGC 1 cut(s) 8
Sau3AI GATC 5 cut(s) 85, 123, 331, 340, 362
Sau96I GGNCC 1 cut(s) 41
ScaI AGTACT 1 cut(s) 95
SchI GAGTC 2 cut(s) 52, 450
SduI GDGCHC 1 cut(s) 55
SetI ASST 8 cut(s) 18, 37, 55, 177, 189, 201, 305, 381
SfaNI GCATC 1 cut(s) 360
SfcI CTRYAG 1 cut(s) 111
Sfr274I CTCGAG 1 cut(s) 458
SgrAI CRCCGGYG 1 cut(s) 482
SlaI CTCGAG 1 cut(s) 458
SmlI CTYRAG 1 cut(s) 458
SmoI CTYRAG 1 cut(s) 458
SphI GCATGC 1 cut(s) 295
Sse9I AATT 1 cut(s) 157
SsiI CCGC 1 cut(s) 29
SstI GAGCTC 1 cut(s) 55
TaaI ACNGT 1 cut(s) 355
TaiI ACGT 2 cut(s) 18, 177
TaqI TCGA 3 cut(s) 368, 393, 459
TasI AATT 1 cut(s) 157
TatI WGTACW 2 cut(s) 93, 348
TfiI GAWTC 1 cut(s) 488
Tru1I TTAA 1 cut(s) 146
Tru9I TTAA 1 cut(s) 146
TseFI GTSAC 1 cut(s) 265
TseI GCWGC 1 cut(s) 7
Tsp45I GTSAC 1 cut(s) 265
TspGWI ACGGA 5 cut(s) 145, 164, 185, 195, 344
XceI RCATGY 1 cut(s) 295
XhoI CTCGAG 1 cut(s) 458
XmiI GTMKAC 1 cut(s) 513
ZraI GACGTC 1 cut(s) 175
ZrmI AGTACT 1 cut(s) 95
Zsp2I ATGCAT 1 cut(s) 297
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.