Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0001888

Physical Location & Seq

Genomic Coordinates Forward (+)

17823074 .. 17824475

Gene Structure 1402 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g15000.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGAAAGAAGCAGAAGCCGGCGAACGATTATTAGCATACGCTGATCCATCTCCGTCAGCGTATTCTAATCGCGACCTAATAGCGTCCGATAATCCAGCTGCTGCGATCATCAGCCCTCACTTCTGTAGTTCCCATTCTATGGATCTTGCAATTGTCAGAAAAGTTTTAACGATACGTGAAGGCAACTTTGTAGTCGCCGATATCACTGGTAACATGATTTTTAAAGTACGAGGATCTCTTTTTTTCAGCCTTCAGGACCGCCGAGTCTTGCTTGACACTGCCGGGTATCCTATTATTACTCTAAGAAAAAAGTTGACGAGTGCACACGACAGATGGCAAGTTTATAGAGGGGATAGCAAAGAAACCAGGGATCTCATCTTCAGTGCTAAGAAATCTTCAGTCGTCCAATTTAAGACCACATTGGATGTTTTCTTAGCACATAACATTACAGAGGATGCACCAGACTTCAAGGTCAAAGGAAGTTGGCATGAACAATCCTGTTTCATATACGGGGGAAACTCCTCCACCATCGTCGCCCAAATGCATAAGAAGCACACAGTTCAAAGCGTGCTGTTTGGAAAGGACAATTTCATGGTGACAGTATATCCCGGGATTGACCAAGCATTCATCGTCGCGCTTATTGTGATTCTTGATGAGATTAACTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009725 GO:0009751 GO:0010033 GO:0014070 GO:0042221 GO:0042493 GO:0043207 GO:0046677 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0098542 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOR

Protein Analysis

223

Amino Acids

24.85

Weight (kDa)

7.8

Isoelectric Point (pI)

30.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001888)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33840 AT1G33840 AT2G14560 AT2G14560 AT2G14560 AT2G14560 AT3G11740 AT5G01750 AT5G01750
fragaria_vesca	FvH4_6g10350 FvH4_6g10360 FvH4_6g10360
malus_domestica	MD04G1169400.v1.1 MD12G1182900.v1.1
prunus_persica	Prupe.6G287400_v2.0.a1 Prupe.6G287500_v2.0.a1 Prupe.6G287900_v2.0.a1
pyrus_communis	pycom04g15000 pycom12g17170
rosa_chinensis	RchiOBHm_Chr3g0461171 RchiOBHm_Chr3g0461181 RchiOBHm_Chr3g0461261
rosa_laevigata	RLG00000024947 RLG00000024948
rosa_multiflora	Rmu_sc0009344.1_g000007 Rmu_sc0009344.1_g000008
rosa_roxburghii	Rroxscaffold_6G00418740 Rroxscaffold_6G00418760 Rroxscaffold_6G00418810 Rroxscaffold_6G00418820
rosa_rugosa	Rorug03G0048800 Rorug03G0048800 Rorug03G0048900 Rorug03G0049300
rosa_samantha	Rh3AG106000 Rh3AG106100 Rh3BG110300 Rh3BG110400 Rh3BG110800 Rh3CG111900 Rh3CG112000 Rh3DG112100 Rh3DG112200 Rh3DG112600
rosa_wichuraiana	Rw3G009090 Rw3G009130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	263, 470
AccB7I	CCANNNNNTGG	1 cut(s)	139
AccII	CGCG	2 cut(s)	72, 635
AciI	CCGC	1 cut(s)	259
AclWI	GGATC	4 cut(s)	38, 150, 241, 378
AcuI	CTGAAG	3 cut(s)	236, 364, 381
AfaI	GTAC	1 cut(s)	228
AfiI	CCNNNNNNNGG	1 cut(s)	139
AgsI	TTSAA	2 cut(s)	469, 563
AjnI	CCWGG	1 cut(s)	365
AluBI	AGCT	1 cut(s)	98
AluI	AGCT	1 cut(s)	98
Alw21I	GWGCWC	1 cut(s)	325
Alw44I	GTGCAC	1 cut(s)	321
AlwI	GGATC	4 cut(s)	38, 150, 241, 378
AlwNI	CAGNNNCTG	1 cut(s)	101
Ama87I	CYCGRG	1 cut(s)	608
ApaLI	GTGCAC	1 cut(s)	321
ApeKI	GCWGC	2 cut(s)	98, 101
AspLEI	GCGC	1 cut(s)	637
AspS9I	GGNCC	1 cut(s)	256
AsuC2I	CCSGG	3 cut(s)	283, 609, 610
AsuHPI	GGTGA	1 cut(s)	607
AvaI	CYCGRG	1 cut(s)	608
AvaII	GGWCC	1 cut(s)	256
BaeGI	GKGCMC	1 cut(s)	325
Bbv12I	GWGCWC	1 cut(s)	325
BbvI	GCAGC	2 cut(s)	85, 88
BccI	CCATC	3 cut(s)	55, 327, 536
BciT130I	CCWGG	1 cut(s)	367
BciVI	GTATCC	1 cut(s)	297
BcnI	CCSGG	3 cut(s)	283, 609, 610
BfmI	CTRYAG	1 cut(s)	124
BfuI	GTATCC	1 cut(s)	297
BisI	GCNGC	2 cut(s)	99, 102
BlsI	GCNGC	2 cut(s)	100, 103
Bme1390I	CCNGG	4 cut(s)	283, 367, 609, 610
Bme18I	GGWCC	1 cut(s)	256
BmeT110I	CYCGRG	1 cut(s)	608
BmgT120I	GGNCC	1 cut(s)	256
BmrFI	CCNGG	4 cut(s)	283, 367, 609, 610
BmsI	GCATC	1 cut(s)	445
BpuMI	CCSGG	3 cut(s)	283, 609, 610
BsaAI	YACGTR	1 cut(s)	176
BsaJI	CCNNGG	2 cut(s)	366, 608
Bsc4I	CCNNNNNNNGG	1 cut(s)	139
Bse118I	RCCGGY	1 cut(s)	17
Bse1I	ACTGG	2 cut(s)	211, 668
BseBI	CCWGG	1 cut(s)	367
BseDI	CCNNGG	2 cut(s)	366, 608
BseGI	GGATG	2 cut(s)	430, 460
BseLI	CCNNNNNNNGG	1 cut(s)	139
BseNI	ACTGG	2 cut(s)	211, 668
BseRI	GAGGAG	1 cut(s)	511
BseSI	GKGCMC	1 cut(s)	325
BseXI	GCAGC	2 cut(s)	85, 88
Bsh1236I	CGCG	2 cut(s)	72, 635
BsiHKAI	GWGCWC	1 cut(s)	325
BsiHKCI	CYCGRG	1 cut(s)	608
BsiSI	CCGG	3 cut(s)	18, 282, 609
BslI	CCNNNNNNNGG	1 cut(s)	139
BsmI	GAATGC	1 cut(s)	623
BsoBI	CYCGRG	1 cut(s)	608
Bsp1286I	GDGCHC	1 cut(s)	325
Bsp143I	GATC	5 cut(s)	43, 105, 142, 233, 370
Bsp68I	TCGCGA	1 cut(s)	72
BspACI	CCGC	1 cut(s)	259
BspFNI	CGCG	2 cut(s)	72, 635
BspPI	GGATC	4 cut(s)	38, 150, 241, 378
BsrFI	RCCGGY	1 cut(s)	17
BsrI	ACTGG	2 cut(s)	211, 668
BssAI	RCCGGY	1 cut(s)	17
BssECI	CCNNGG	2 cut(s)	366, 608
BssMI	GATC	5 cut(s)	43, 105, 142, 233, 370
Bst2UI	CCWGG	1 cut(s)	367
Bst4CI	ACNGT	2 cut(s)	559, 601
BstBAI	YACGTR	1 cut(s)	176
BstC8I	GCNNGC	2 cut(s)	19, 569
BstDEI	CTNAG	3 cut(s)	302, 387, 433
BstF5I	GGATG	2 cut(s)	430, 460
BstFNI	CGCG	2 cut(s)	72, 635
BstHHI	GCGC	1 cut(s)	637
BstKTI	GATC	5 cut(s)	46, 108, 145, 236, 373
BstMBI	GATC	5 cut(s)	43, 105, 142, 233, 370
BstMWI	GCNNNNNNNGC	1 cut(s)	550
BstNI	CCWGG	1 cut(s)	367
BstSCI	CCNGG	4 cut(s)	281, 365, 607, 608
BstSFI	CTRYAG	1 cut(s)	124
BstSLI	GKGCMC	1 cut(s)	325
BstUI	CGCG	2 cut(s)	72, 635
BstV1I	GCAGC	2 cut(s)	85, 88
BstX2I	RGATCY	3 cut(s)	142, 233, 370
BstYI	RGATCY	3 cut(s)	142, 233, 370
BsuI	GTATCC	1 cut(s)	297
BtsCI	GGATG	2 cut(s)	430, 460
BtsI	GCAGTG	1 cut(s)	276
BtsIMutI	CAGTG	3 cut(s)	204, 276, 388
BtuMI	TCGCGA	1 cut(s)	72
Cac8I	GCNNGC	2 cut(s)	19, 569
CaiI	CAGNNNCTG	1 cut(s)	101
CfoI	GCGC	1 cut(s)	637
Cfr10I	RCCGGY	1 cut(s)	17
Cfr13I	GGNCC	1 cut(s)	256
Cfr9I	CCCGGG	1 cut(s)	608
CseI	GACGC	1 cut(s)	72
Csp6I	GTAC	1 cut(s)	227
CviAII	CATG	3 cut(s)	214, 488, 592
CviJI	RGCY	4 cut(s)	17, 98, 114, 249
CviKI_1	RGCY	4 cut(s)	17, 98, 114, 249
CviQI	GTAC	1 cut(s)	227
DdeI	CTNAG	3 cut(s)	302, 387, 433
DpnI	GATC	5 cut(s)	45, 107, 144, 235, 372
DpnII	GATC	5 cut(s)	43, 105, 142, 233, 370
DraI	TTTAAA	1 cut(s)	223
DrdI	GACNNNNNNGTC	2 cut(s)	263, 470
DseDI	GACNNNNNNGTC	2 cut(s)	263, 470
Eco32I	GATATC	1 cut(s)	202
Eco47I	GGWCC	1 cut(s)	256
Eco57I	CTGAAG	3 cut(s)	236, 364, 381
Eco88I	CYCGRG	1 cut(s)	608
EcoRII	CCWGG	1 cut(s)	365
EcoRV	GATATC	1 cut(s)	202
EcoT22I	ATGCAT	1 cut(s)	546
FaeI	CATG	3 cut(s)	217, 491, 595
FatI	CATG	3 cut(s)	213, 487, 591
Fnu4HI	GCNGC	2 cut(s)	99, 102
FokI	GGATG	2 cut(s)	437, 467
Fsp4HI	GCNGC	2 cut(s)	99, 102
GlaI	GCGC	1 cut(s)	636
GluI	GCNGC	2 cut(s)	99, 102
HapII	CCGG	3 cut(s)	18, 282, 609
HgaI	GACGC	1 cut(s)	72
HhaI	GCGC	1 cut(s)	637
Hin1II	CATG	3 cut(s)	217, 491, 595
Hin6I	GCGC	1 cut(s)	635
HinP1I	GCGC	1 cut(s)	635
HincII	GTYRAC	1 cut(s)	315
HindII	GTYRAC	1 cut(s)	315
HinfI	GANTC	2 cut(s)	264, 646
HpaII	CCGG	3 cut(s)	18, 282, 609
HphI	GGTGA	1 cut(s)	607
Hpy166II	GTNNAC	2 cut(s)	315, 323
Hpy188I	TCNGA	2 cut(s)	88, 158
Hpy188III	TCNNGA	3 cut(s)	71, 254, 650
Hpy8I	GTNNAC	2 cut(s)	315, 323
Hpy99I	CGWCG	2 cut(s)	536, 635
HpyAV	CCTTC	2 cut(s)	173, 260
HpyCH4III	ACNGT	2 cut(s)	559, 601
HpyCH4IV	ACGT	1 cut(s)	175
HpyCH4V	TGCA	4 cut(s)	149, 323, 458, 544
HpyF10VI	GCNNNNNNNGC	1 cut(s)	550
HpyF3I	CTNAG	3 cut(s)	302, 387, 433
HpySE526I	ACGT	1 cut(s)	175
Hsp92II	CATG	3 cut(s)	217, 491, 595
HspAI	GCGC	1 cut(s)	635
KroI	GCCGGC	1 cut(s)	17
KroNI	GCCGGC	1 cut(s)	19
Kzo9I	GATC	5 cut(s)	43, 105, 142, 233, 370
Lsp1109I	GCAGC	2 cut(s)	85, 88
LweI	GCATC	1 cut(s)	445
MaeII	ACGT	1 cut(s)	175
MaeIII	GTNAC	2 cut(s)	209, 595
MalI	GATC	5 cut(s)	45, 107, 144, 235, 372
MboI	GATC	5 cut(s)	43, 105, 142, 233, 370
MboII	GAAGA	2 cut(s)	370, 387
MfeI	CAATTG	1 cut(s)	150
MflI	RGATCY	3 cut(s)	142, 233, 370
MhlI	GDGCHC	1 cut(s)	325
MluCI	AATT	3 cut(s)	150, 407, 586
MlyI	GAGTC	1 cut(s)	273
MnlI	CCTC	5 cut(s)	126, 224, 341, 445, 532
Mph1103I	ATGCAT	1 cut(s)	546
MroNI	GCCGGC	1 cut(s)	17
MseI	TTAA	4 cut(s)	167, 222, 411, 660
MspA1I	CMGCKG	1 cut(s)	98
MspI	CCGG	3 cut(s)	18, 282, 609
MspR9I	CCNGG	4 cut(s)	283, 367, 609, 610
MunI	CAATTG	1 cut(s)	150
Mva1269I	GAATGC	1 cut(s)	623
MvaI	CCWGG	1 cut(s)	367
MvnI	CGCG	2 cut(s)	72, 635
MwoI	GCNNNNNNNGC	1 cut(s)	550
NaeI	GCCGGC	1 cut(s)	19
NciI	CCSGG	3 cut(s)	283, 609, 610
NdeII	GATC	5 cut(s)	43, 105, 142, 233, 370
NgoMIV	GCCGGC	1 cut(s)	17
NlaIII	CATG	3 cut(s)	217, 491, 595
NmeAIII	GCCGAG	1 cut(s)	287
NmuCI	GTSAC	1 cut(s)	595
NruI	TCGCGA	1 cut(s)	72
NsiI	ATGCAT	1 cut(s)	546
PctI	GAATGC	1 cut(s)	623
PdiI	GCCGGC	1 cut(s)	19
PfeI	GAWTC	1 cut(s)	646
PflMI	CCANNNNNTGG	1 cut(s)	139
PkrI	GCNGC	2 cut(s)	100, 103
PleI	GAGTC	1 cut(s)	272
PpsI	GAGTC	1 cut(s)	272
Ppu21I	YACGTR	1 cut(s)	176
Psp6I	CCWGG	1 cut(s)	365
PspGI	CCWGG	1 cut(s)	365
PspPI	GGNCC	1 cut(s)	256
PstNI	CAGNNNCTG	1 cut(s)	101
PsuI	RGATCY	3 cut(s)	142, 233, 370
PvuII	CAGCTG	1 cut(s)	98
RruI	TCGCGA	1 cut(s)	72
RsaI	GTAC	1 cut(s)	228
RsaNI	GTAC	1 cut(s)	227
SaqAI	TTAA	4 cut(s)	167, 222, 411, 660
SatI	GCNGC	2 cut(s)	99, 102
Sau3AI	GATC	5 cut(s)	43, 105, 142, 233, 370
Sau96I	GGNCC	1 cut(s)	256
SchI	GAGTC	1 cut(s)	273
ScrFI	CCNGG	4 cut(s)	283, 367, 609, 610
SduI	GDGCHC	1 cut(s)	325
SetI	ASST	4 cut(s)	78, 100, 178, 474
SfaNI	GCATC	1 cut(s)	445
SfcI	CTRYAG	1 cut(s)	124
SinI	GGWCC	1 cut(s)	256
SmaI	CCCGGG	1 cut(s)	610
Sse9I	AATT	3 cut(s)	150, 407, 586
SsiI	CCGC	1 cut(s)	259
StyD4I	CCNGG	4 cut(s)	281, 365, 607, 608
TaaI	ACNGT	2 cut(s)	559, 601
TaiI	ACGT	1 cut(s)	178
TasI	AATT	3 cut(s)	150, 407, 586
TfiI	GAWTC	1 cut(s)	646
Tru1I	TTAA	4 cut(s)	167, 222, 411, 660
Tru9I	TTAA	4 cut(s)	167, 222, 411, 660
TscAI	CASTG	3 cut(s)	211, 283, 388
TseFI	GTSAC	1 cut(s)	595
TseI	GCWGC	2 cut(s)	98, 101
Tsp45I	GTSAC	1 cut(s)	595
TspDTI	ATGAA	5 cut(s)	17, 493, 504, 580, 616
TspGWI	ACGGA	1 cut(s)	42
TspMI	CCCGGG	1 cut(s)	608
TspRI	CASTG	3 cut(s)	211, 283, 388
Van91I	CCANNNNNTGG	1 cut(s)	139
VneI	GTGCAC	1 cut(s)	321
VpaK11BI	GGWCC	1 cut(s)	256
XmaI	CCCGGG	1 cut(s)	608
Zsp2I	ATGCAT	1 cut(s)	546

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.