Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001888

Physical Location & Seq

Genomic Coordinates Forward (+)

6184385 .. 6186111

Gene Structure 1727 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g10360.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGGCACAAGCAATCATCAGCCCTAACTTCTGCAGTCCGCACCCTGTTGATCTTGGAATCGTCAAGCTGGTTCCGTCCGGCAACTTTTCAGTCAAGGATGTTAATGGCAACATTGTTTTCAATGTCACAGGAACATTTTTGAGCTTGCGCCGTTTCTTAGTTGACGGTGCTGGGAATCCCATTGTCACTCTCCAAAAGAAGTTGCCGAGTACACATCATAGATGGGAAGTTTATAGAGGTGATAACACGGATTCGAGGAATCTGGTATTTAGTGTTAAGAAATCTTCGGTGGTTCAGTGGAAGACGAATTTGCATGTTTTCTTAGCAAATAATGAAGGAGAGTCTGCCCCTGACTTCAAGGTGAAAGGAAGTTGGTTTGAACAATCTTGTGTCGTATATGCTGGGAAATCCAATTCCTCCAACATTCTTGCTCAAATGCACAAGAAGCACACAGTTACAAGCGTGTTGTTTATGAAGGACAATTTCAGGGTTACAGTGAGTCCAGGTGTTGACCAAGCACTCATCATCGCGCTTATTTTCATTCTTCATGAGATAAACTCCGGTGGTTCTAGTTCTGGTGATTCCGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009725 GO:0009751 GO:0010033 GO:0014070 GO:0042221 GO:0042493 GO:0043207 GO:0046677 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0098542 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOR

Protein Analysis

197

Amino Acids

21.44

Weight (kDa)

9.33

Isoelectric Point (pI)

38.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LOR	PF04525	26 - 182	1.7e-44	LURP-one-related

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001888)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33840 AT1G33840 AT2G14560 AT2G14560 AT2G14560 AT2G14560 AT3G11740 AT5G01750 AT5G01750
fragaria_vesca	FvH4_6g10350 FvH4_6g10360 FvH4_6g10360
malus_domestica	MD04G1169400.v1.1 MD12G1182900.v1.1
prunus_persica	Prupe.6G287400_v2.0.a1 Prupe.6G287500_v2.0.a1 Prupe.6G287900_v2.0.a1
pyrus_communis	pycom04g15000 pycom12g17170
rosa_chinensis	RchiOBHm_Chr3g0461171 RchiOBHm_Chr3g0461181 RchiOBHm_Chr3g0461261
rosa_laevigata	RLG00000024947 RLG00000024948
rosa_multiflora	Rmu_sc0009344.1_g000007 Rmu_sc0009344.1_g000008
rosa_roxburghii	Rroxscaffold_6G00418740 Rroxscaffold_6G00418760 Rroxscaffold_6G00418810 Rroxscaffold_6G00418820
rosa_rugosa	Rorug03G0048800 Rorug03G0048800 Rorug03G0048900 Rorug03G0049300
rosa_samantha	Rh3AG106000 Rh3AG106100 Rh3BG110300 Rh3BG110400 Rh3BG110800 Rh3CG111900 Rh3CG112000 Rh3DG112100 Rh3DG112200 Rh3DG112600
rosa_wichuraiana	Rw3G009090 Rw3G009130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	530
AciI	CCGC	1 cut(s)	38
AcsI	RAATTY	1 cut(s)	307
AfaI	GTAC	1 cut(s)	211
AgsI	TTSAA	3 cut(s)	121, 358, 380
AjnI	CCWGG	1 cut(s)	502
AluBI	AGCT	2 cut(s)	67, 144
AluI	AGCT	2 cut(s)	67, 144
ApoI	RAATTY	1 cut(s)	307
AspLEI	GCGC	2 cut(s)	150, 532
AsuHPI	GGTGA	3 cut(s)	251, 373, 590
BbsI	GAAGAC	1 cut(s)	308
BccI	CCATC	1 cut(s)	216
BceAI	ACGGC	1 cut(s)	135
BciT130I	CCWGG	1 cut(s)	504
BfaI	CTAG	1 cut(s)	570
BfmI	CTRYAG	1 cut(s)	31
Bme1390I	CCNGG	1 cut(s)	504
BmiI	GGNNCC	1 cut(s)	72
BmrFI	CCNGG	1 cut(s)	504
BpiI	GAAGAC	1 cut(s)	308
BplI	GAGNNNNNCTC	2 cut(s)	542, 574
BsaWI	WCCGGW	1 cut(s)	560
BseBI	CCWGG	1 cut(s)	504
BseGI	GGATG	1 cut(s)	103
BseYI	CCCAGC	2 cut(s)	170, 401
Bsh1236I	CGCG	1 cut(s)	530
BsiSI	CCGG	2 cut(s)	78, 561
Bsp143I	GATC	1 cut(s)	49
BspACI	CCGC	1 cut(s)	38
BspFNI	CGCG	1 cut(s)	530
BspHI	TCATGA	1 cut(s)	547
BspLI	GGNNCC	1 cut(s)	72
BspMAI	CTGCAG	1 cut(s)	35
BssMI	GATC	1 cut(s)	49
Bst2UI	CCWGG	1 cut(s)	504
Bst4CI	ACNGT	3 cut(s)	167, 454, 496
BstC8I	GCNNGC	1 cut(s)	146
BstDEI	CTNAG	2 cut(s)	157, 322
BstF5I	GGATG	1 cut(s)	103
BstFNI	CGCG	1 cut(s)	530
BstHHI	GCGC	2 cut(s)	150, 532
BstKTI	GATC	1 cut(s)	52
BstMBI	GATC	1 cut(s)	49
BstMWI	GCNNNNNNNGC	1 cut(s)	445
BstNI	CCWGG	1 cut(s)	504
BstNSI	RCATGY	1 cut(s)	317
BstSCI	CCNGG	1 cut(s)	502
BstSFI	CTRYAG	1 cut(s)	31
BstUI	CGCG	1 cut(s)	530
BstV2I	GAAGAC	1 cut(s)	308
BtgZI	GCGATG	1 cut(s)	511
BtsCI	GGATG	1 cut(s)	103
BtsIMutI	CAGTG	2 cut(s)	302, 501
Cac8I	GCNNGC	1 cut(s)	146
CciI	TCATGA	1 cut(s)	547
CfoI	GCGC	2 cut(s)	150, 532
Csp6I	GTAC	1 cut(s)	210
CviAII	CATG	2 cut(s)	314, 548
CviJI	RGCY	3 cut(s)	21, 67, 144
CviKI_1	RGCY	3 cut(s)	21, 67, 144
CviQI	GTAC	1 cut(s)	210
DdeI	CTNAG	2 cut(s)	157, 322
DpnI	GATC	1 cut(s)	51
DpnII	GATC	1 cut(s)	49
EcoRII	CCWGG	1 cut(s)	502
FaeI	CATG	2 cut(s)	317, 551
FaiI	YATR	7 cut(s)	219, 234, 315, 397, 399, 473, 549
FatI	CATG	2 cut(s)	313, 547
FokI	GGATG	1 cut(s)	110
FspBI	CTAG	1 cut(s)	570
GlaI	GCGC	2 cut(s)	149, 531
GsaI	CCCAGC	2 cut(s)	174, 405
HapII	CCGG	2 cut(s)	78, 561
HhaI	GCGC	2 cut(s)	150, 532
Hin1II	CATG	2 cut(s)	317, 551
Hin6I	GCGC	2 cut(s)	148, 530
HinP1I	GCGC	2 cut(s)	148, 530
HincII	GTYRAC	2 cut(s)	163, 511
HindII	GTYRAC	2 cut(s)	163, 511
HinfI	GANTC	7 cut(s)	57, 175, 251, 259, 341, 499, 581
HpaII	CCGG	2 cut(s)	78, 561
HphI	GGTGA	3 cut(s)	251, 373, 590
Hpy166II	GTNNAC	3 cut(s)	163, 212, 511
Hpy188I	TCNGA	1 cut(s)	590
Hpy188III	TCNNGA	1 cut(s)	548
Hpy8I	GTNNAC	3 cut(s)	163, 212, 511
HpyAV	CCTTC	2 cut(s)	329, 469
HpyCH4III	ACNGT	3 cut(s)	167, 454, 496
HpyCH4V	TGCA	3 cut(s)	33, 313, 439
HpyF10VI	GCNNNNNNNGC	1 cut(s)	445
HpyF3I	CTNAG	2 cut(s)	157, 322
Hsp92II	CATG	2 cut(s)	317, 551
HspAI	GCGC	2 cut(s)	148, 530
Kzo9I	GATC	1 cut(s)	49
MaeI	CTAG	1 cut(s)	570
MaeIII	GTNAC	4 cut(s)	124, 184, 454, 490
MalI	GATC	1 cut(s)	51
MboI	GATC	1 cut(s)	49
MboII	GAAGA	3 cut(s)	276, 313, 536
MluCI	AATT	3 cut(s)	307, 412, 481
MlyI	GAGTC	2 cut(s)	350, 508
MmeI	TCCRAC	1 cut(s)	444
MnlI	CCTC	3 cut(s)	230, 249, 427
MseI	TTAA	2 cut(s)	102, 276
MspI	CCGG	2 cut(s)	78, 561
MspR9I	CCNGG	1 cut(s)	504
MvaI	CCWGG	1 cut(s)	504
MvnI	CGCG	1 cut(s)	530
MwoI	GCNNNNNNNGC	1 cut(s)	445
NdeII	GATC	1 cut(s)	49
NlaIII	CATG	2 cut(s)	317, 551
NlaIV	GGNNCC	1 cut(s)	72
NmeAIII	GCCGAG	1 cut(s)	231
NmuCI	GTSAC	2 cut(s)	124, 184
NspI	RCATGY	1 cut(s)	317
PagI	TCATGA	1 cut(s)	547
PfeI	GAWTC	5 cut(s)	57, 175, 251, 259, 581
PleI	GAGTC	2 cut(s)	349, 507
PpsI	GAGTC	2 cut(s)	349, 507
Psp6I	CCWGG	1 cut(s)	502
PspFI	CCCAGC	2 cut(s)	170, 401
PspGI	CCWGG	1 cut(s)	502
PspN4I	GGNNCC	1 cut(s)	72
PstI	CTGCAG	1 cut(s)	35
RsaI	GTAC	1 cut(s)	211
RsaNI	GTAC	1 cut(s)	210
SaqAI	TTAA	2 cut(s)	102, 276
Sau3AI	GATC	1 cut(s)	49
SchI	GAGTC	2 cut(s)	350, 508
ScrFI	CCNGG	1 cut(s)	504
SetI	ASST	5 cut(s)	69, 146, 241, 363, 508
SfcI	CTRYAG	1 cut(s)	31
Sse9I	AATT	3 cut(s)	307, 412, 481
SsiI	CCGC	1 cut(s)	38
SspMI	CTAG	1 cut(s)	570
StyD4I	CCNGG	1 cut(s)	502
TaaI	ACNGT	3 cut(s)	167, 454, 496
TaqI	TCGA	1 cut(s)	254
TasI	AATT	3 cut(s)	307, 412, 481
TatI	WGTACW	1 cut(s)	209
TfiI	GAWTC	5 cut(s)	57, 175, 251, 259, 581
Tru1I	TTAA	2 cut(s)	102, 276
Tru9I	TTAA	2 cut(s)	102, 276
TscAI	CASTG	2 cut(s)	302, 501
TseFI	GTSAC	2 cut(s)	124, 184
Tsp45I	GTSAC	2 cut(s)	124, 184
TspDTI	ATGAA	4 cut(s)	348, 488, 529, 536
TspGWI	ACGGA	3 cut(s)	63, 263, 574
TspRI	CASTG	2 cut(s)	302, 501
XapI	RAATTY	1 cut(s)	307
XceI	RCATGY	1 cut(s)	317
XspI	CTAG	1 cut(s)	570

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.