Rh3BG110800

LURP-one-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0001888
Physical Location & Seq
Reverse (-)
9022662 .. 9031797
9136 bp
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UTR
Exon/CDS
Intron
Rh3BG110800.1

Sequence Viewer

Length: 519 bp
ATGATGATATTAATACCAAATACTCCATCACCATCTCCCATCATCAGCCCTAAGTACTGTAATTTCTACCCCATCAGTATTTCAATTGTCAGAGAAGTTAAGACCTTAGCTACTGATGATGATGTTAGCATCCTCGTAGTAAAAAATGCTGATGGCAATACCATTGTCGGAGCGAAGCAGAAATTTTATTGGTTTCGTCATGACCGACTAGTTTTGTACAACGCCGCTGGAAAACCCTTCGACGTAAGGCTACCTGGAGAAAAATCAGAAAAGTACATCGTCTTCTTCCTCTGTTCTTTAGCTGAGGGCTTAATTTTCACCATGATCAGAATTTTCAACACCTGCCTCATATATGCTGGGGACTCTTCCACCATCATTGCCGAAATGCATAAGAAGAACACAGTTCAAAGTGTGCTGTTTGGCAAGGACAATTTCATGGTCAGAGTATGTCCTGGTATTGACTATGCATCCATTGCCACGCTTATTGTGATCCTTGATGCGATTAATGGTGATAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0019904 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOR

Protein Analysis

172

Amino Acids

19.22

Weight (kDa)

8.32

Isoelectric Point (pI)

35.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOR PF04525 47 - 166 9.2e-13 LURP-one-related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 350
Acc36I ACCTGC 1 cut(s) 350
AciI CCGC 1 cut(s) 225
AclWI GGATC 1 cut(s) 484
AcsI RAATTY 2 cut(s) 182, 330
AfaI GTAC 3 cut(s) 56, 218, 275
AgsI TTSAA 3 cut(s) 84, 337, 407
AhlI ACTAGT 1 cut(s) 208
AjnI CCWGG 2 cut(s) 253, 451
AluBI AGCT 2 cut(s) 110, 302
AluI AGCT 2 cut(s) 110, 302
AlwI GGATC 1 cut(s) 484
ApoI RAATTY 2 cut(s) 182, 330
AseI ATTAAT 2 cut(s) 11, 504
AsuHPI GGTGA 2 cut(s) 21, 310
BarI GAAGNNNNNNTAC 2 cut(s) 266, 298
BbsI GAAGAC 1 cut(s) 274
BbvCI CCTCAGC 1 cut(s) 303
BccI CCATC 6 cut(s) 34, 40, 47, 80, 146, 380
BciT130I CCWGG 2 cut(s) 255, 453
BclI TGATCA 1 cut(s) 324
BcuI ACTAGT 1 cut(s) 208
BfaI CTAG 1 cut(s) 209
BfuAI ACCTGC 1 cut(s) 350
BisI GCNGC 1 cut(s) 225
BlsI GCNGC 1 cut(s) 226
BmcAI AGTACT 1 cut(s) 56
Bme1390I CCNGG 2 cut(s) 255, 453
BmrFI CCNGG 2 cut(s) 255, 453
BmsI GCATC 3 cut(s) 138, 476, 487
BpiI GAAGAC 1 cut(s) 274
BpmI CTGGAG 1 cut(s) 276
Bpu10I CCTNAGC 2 cut(s) 106, 303
Bse3DI GCAATG 2 cut(s) 375, 471
BseBI CCWGG 2 cut(s) 255, 453
BseGI GGATG 2 cut(s) 129, 467
BseMI GCAATG 2 cut(s) 375, 471
BseMII CTCAG 1 cut(s) 294
BseYI CCCAGC 1 cut(s) 356
BslFI GGGAC 1 cut(s) 374
BsmFI GGGAC 1 cut(s) 374
Bsp1407I TGTACA 1 cut(s) 216
Bsp143I GATC 2 cut(s) 324, 489
BspACI CCGC 1 cut(s) 225
BspCNI CTCAG 1 cut(s) 295
BspHI TCATGA 1 cut(s) 199
BspMI ACCTGC 1 cut(s) 350
BspPI GGATC 1 cut(s) 484
BsrDI GCAATG 2 cut(s) 375, 471
BsrGI TGTACA 1 cut(s) 216
BssMI GATC 2 cut(s) 324, 489
Bst2UI CCWGG 2 cut(s) 255, 453
Bst4CI ACNGT 2 cut(s) 59, 403
Bst6I CTCTTC 1 cut(s) 370
BstAPI GCANNNNNTGC 1 cut(s) 473
BstAUI TGTACA 1 cut(s) 216
BstDEI CTNAG 3 cut(s) 51, 106, 303
BstF5I GGATG 2 cut(s) 129, 467
BstKTI GATC 2 cut(s) 327, 492
BstMBI GATC 2 cut(s) 324, 489
BstMWI GCNNNNNNNGC 1 cut(s) 473
BstNI CCWGG 2 cut(s) 255, 453
BstSCI CCNGG 2 cut(s) 253, 451
BstV2I GAAGAC 1 cut(s) 274
BtsCI GGATG 2 cut(s) 129, 467
BveI ACCTGC 1 cut(s) 350
CciI TCATGA 1 cut(s) 199
Csp6I GTAC 3 cut(s) 55, 217, 274
CspCI CAANNNNNGTGG 4 cut(s) 358, 393, 466, 501
CviAII CATG 3 cut(s) 200, 322, 436
CviJI RGCY 5 cut(s) 48, 110, 250, 302, 309
CviKI_1 RGCY 5 cut(s) 48, 110, 250, 302, 309
CviQI GTAC 3 cut(s) 55, 217, 274
DdeI CTNAG 3 cut(s) 51, 106, 303
DpnI GATC 2 cut(s) 326, 491
DpnII GATC 2 cut(s) 324, 489
Eam1104I CTCTTC 1 cut(s) 370
EarI CTCTTC 1 cut(s) 370
EcoRII CCWGG 2 cut(s) 253, 451
EcoT22I ATGCAT 2 cut(s) 390, 469
FaeI CATG 3 cut(s) 203, 325, 439
FaiI YATR 9 cut(s) 201, 323, 350, 352, 354, 390, 437, 448, 465
FaqI GGGAC 1 cut(s) 374
FatI CATG 3 cut(s) 199, 321, 435
FbaI TGATCA 1 cut(s) 324
Fnu4HI GCNGC 1 cut(s) 225
FokI GGATG 2 cut(s) 116, 454
Fsp4HI GCNGC 1 cut(s) 225
FspBI CTAG 1 cut(s) 209
GluI GCNGC 1 cut(s) 225
GsaI CCCAGC 1 cut(s) 360
GsuI CTGGAG 1 cut(s) 276
Hin1II CATG 3 cut(s) 203, 325, 439
HinfI GANTC 1 cut(s) 362
HphI GGTGA 2 cut(s) 21, 310
Hpy188I TCNGA 5 cut(s) 92, 170, 268, 329, 443
Hpy188III TCNNGA 1 cut(s) 200
Hpy99I CGWCG 1 cut(s) 245
HpyAV CCTTC 1 cut(s) 247
HpyCH4III ACNGT 2 cut(s) 59, 403
HpyCH4IV ACGT 1 cut(s) 243
HpyCH4V TGCA 2 cut(s) 388, 467
HpyF10VI GCNNNNNNNGC 1 cut(s) 473
HpyF3I CTNAG 3 cut(s) 51, 106, 303
HpySE526I ACGT 1 cut(s) 243
Hsp92II CATG 3 cut(s) 203, 325, 439
Ksp22I TGATCA 1 cut(s) 324
Kzo9I GATC 2 cut(s) 324, 489
LmnI GCTCC 1 cut(s) 170
LpnPI CCDG 7 cut(s) 213, 240, 267, 342, 355, 438, 465
LweI GCATC 3 cut(s) 138, 476, 487
MaeI CTAG 1 cut(s) 209
MaeII ACGT 1 cut(s) 243
MalI GATC 2 cut(s) 326, 491
MboI GATC 2 cut(s) 324, 489
MboII GAAGA 4 cut(s) 274, 277, 357, 406
MfeI CAATTG 1 cut(s) 84
MluCI AATT 6 cut(s) 61, 84, 182, 312, 330, 430
MlyI GAGTC 1 cut(s) 356
MmeI TCCRAC 1 cut(s) 148
MnlI CCTC 4 cut(s) 143, 298, 299, 356
Mph1103I ATGCAT 2 cut(s) 390, 469
MseI TTAA 4 cut(s) 11, 99, 311, 504
MspA1I CMGCKG 1 cut(s) 227
MspR9I CCNGG 2 cut(s) 255, 453
MunI CAATTG 1 cut(s) 84
MvaI CCWGG 2 cut(s) 255, 453
MwoI GCNNNNNNNGC 1 cut(s) 473
NdeII GATC 2 cut(s) 324, 489
NlaIII CATG 3 cut(s) 203, 325, 439
NsiI ATGCAT 2 cut(s) 390, 469
PagI TCATGA 1 cut(s) 199
PaqCI CACCTGC 1 cut(s) 350
PcsI WCGNNNNNNNCGW 1 cut(s) 202
PkrI GCNGC 1 cut(s) 226
PleI GAGTC 1 cut(s) 356
PpsI GAGTC 1 cut(s) 356
PshBI ATTAAT 2 cut(s) 11, 504
Psp6I CCWGG 2 cut(s) 253, 451
PspFI CCCAGC 1 cut(s) 356
PspGI CCWGG 2 cut(s) 253, 451
RsaI GTAC 3 cut(s) 56, 218, 275
RsaNI GTAC 3 cut(s) 55, 217, 274
SaqAI TTAA 4 cut(s) 11, 99, 311, 504
SatI GCNGC 1 cut(s) 225
Sau3AI GATC 2 cut(s) 324, 489
ScaI AGTACT 1 cut(s) 56
SchI GAGTC 1 cut(s) 356
ScrFI CCNGG 2 cut(s) 255, 453
SetI ASST 6 cut(s) 107, 112, 246, 256, 304, 344
SfaNI GCATC 3 cut(s) 138, 476, 487
SpeI ACTAGT 1 cut(s) 208
Sse9I AATT 6 cut(s) 61, 84, 182, 312, 330, 430
SsiI CCGC 1 cut(s) 225
SspMI CTAG 1 cut(s) 209
StyD4I CCNGG 2 cut(s) 253, 451
TaaI ACNGT 2 cut(s) 59, 403
TaiI ACGT 1 cut(s) 246
TaqI TCGA 1 cut(s) 240
TaqII GACCGA 1 cut(s) 219
TasI AATT 6 cut(s) 61, 84, 182, 312, 330, 430
TatI WGTACW 3 cut(s) 54, 216, 273
TauI GCSGC 1 cut(s) 227
Tru1I TTAA 4 cut(s) 11, 99, 311, 504
Tru9I TTAA 4 cut(s) 11, 99, 311, 504
TspDTI ATGAA 1 cut(s) 424
VspI ATTAAT 2 cut(s) 11, 504
XapI RAATTY 2 cut(s) 182, 330
XspI CTAG 1 cut(s) 209
ZrmI AGTACT 1 cut(s) 56
Zsp2I ATGCAT 2 cut(s) 390, 469
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.