Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0001888

Physical Location & Seq

Genomic Coordinates Forward (+)

26582645 .. 26584056

Gene Structure 1412 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G287400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGACACAACCAGAAGCTAGCGCACCATCAGTAGCATATGCTCATCCCGCTGTTGCGGTTGTCAGCCCTCACTTCTGCAGCCCCTACCCCATGGATATTGCAATTGTTAGAAAACTTCTAACCATAACCCATGGCAGCTTTGTAGTCACTGATGTCAATGGCAACATCATTTTGAAAGTCAAAGGAGATCATTTACTTGACACGGCTGGTTATCCCATTCTCACTCTAAGACAGAAGTTGATGTCTGCACATGAGAGATGGCAAGTTTTTAGGGGGAAAAGCACAAAATCCAGGGATCTGATTTTTAGTACTAAGAGATCTTCAATGGTCCAATTTTACACCAAATTAGATGTTTTCTTAGCACATAACACAACAGAGAAGGTACCTGACTTCAAGGTCAAAGGAAGTTGGTCTGAAAAATCCTGCGTCATATATGCTGGGGACTACTCCACCATTGTTGCCCAAATGCATAAGAAGCGCACAGTTAAAAGTGAGTTGCTTGGAAAGGACCATTTCATGGTGACAGTGAATCCTGGGATTGATTATGCATTCATCGTCGCGCTTATTGTGATTCTTGATGAGATTAACACTGCTAGTACTCCTACTGTTCCAACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009725 GO:0009751 GO:0010033 GO:0014070 GO:0042221 GO:0042493 GO:0043207 GO:0046677 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0098542 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOR

Protein Analysis

206

Amino Acids

22.75

Weight (kDa)

9.28

Isoelectric Point (pI)

38.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001888)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33840 AT1G33840 AT2G14560 AT2G14560 AT2G14560 AT2G14560 AT3G11740 AT5G01750 AT5G01750
fragaria_vesca	FvH4_6g10350 FvH4_6g10360 FvH4_6g10360
malus_domestica	MD04G1169400.v1.1 MD12G1182900.v1.1
prunus_persica	Prupe.6G287400_v2.0.a1 Prupe.6G287500_v2.0.a1 Prupe.6G287900_v2.0.a1
pyrus_communis	pycom04g15000 pycom12g17170
rosa_chinensis	RchiOBHm_Chr3g0461171 RchiOBHm_Chr3g0461181 RchiOBHm_Chr3g0461261
rosa_laevigata	RLG00000024947 RLG00000024948
rosa_multiflora	Rmu_sc0009344.1_g000007 Rmu_sc0009344.1_g000008
rosa_roxburghii	Rroxscaffold_6G00418740 Rroxscaffold_6G00418760 Rroxscaffold_6G00418810 Rroxscaffold_6G00418820
rosa_rugosa	Rorug03G0048800 Rorug03G0048800 Rorug03G0048900 Rorug03G0049300
rosa_samantha	Rh3AG106000 Rh3AG106100 Rh3BG110300 Rh3BG110400 Rh3BG110800 Rh3CG111900 Rh3CG112000 Rh3DG112100 Rh3DG112200 Rh3DG112600
rosa_wichuraiana	Rw3G009090 Rw3G009130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	395
Acc65I	GGTACC	1 cut(s)	382
AccB1I	GGYRCC	1 cut(s)	382
AccB7I	CCANNNNNTGG	1 cut(s)	517
AccII	CGCG	1 cut(s)	560
AciI	CCGC	2 cut(s)	48, 56
AclWI	GGATC	1 cut(s)	303
AfaI	GTAC	3 cut(s)	310, 384, 598
AfiI	CCNNNNNNNGG	1 cut(s)	517
AgsI	TTSAA	3 cut(s)	175, 324, 394
AjnI	CCWGG	2 cut(s)	290, 532
AluBI	AGCT	2 cut(s)	17, 138
AluI	AGCT	2 cut(s)	17, 138
AlwI	GGATC	1 cut(s)	303
ApeKI	GCWGC	2 cut(s)	78, 135
Asp718I	GGTACC	1 cut(s)	382
AspLEI	GCGC	3 cut(s)	23, 480, 562
AspS9I	GGNCC	2 cut(s)	328, 508
AsuHPI	GGTGA	1 cut(s)	532
AsuNHI	GCTAGC	1 cut(s)	17
AvaII	GGWCC	2 cut(s)	328, 508
BanI	GGYRCC	1 cut(s)	382
BbvI	GCAGC	2 cut(s)	90, 147
BccI	CCATC	2 cut(s)	34, 252
BceAI	ACGGC	1 cut(s)	219
BciT130I	CCWGG	2 cut(s)	292, 534
BfaI	CTAG	2 cut(s)	18, 594
BfmI	CTRYAG	1 cut(s)	76
BglII	AGATCT	1 cut(s)	317
BisI	GCNGC	2 cut(s)	79, 136
BlsI	GCNGC	2 cut(s)	80, 137
BmcAI	AGTACT	2 cut(s)	310, 598
Bme1390I	CCNGG	2 cut(s)	292, 534
Bme18I	GGWCC	2 cut(s)	328, 508
BmgT120I	GGNCC	2 cut(s)	328, 508
BmiI	GGNNCC	1 cut(s)	384
BmrFI	CCNGG	2 cut(s)	292, 534
BmtI	GCTAGC	1 cut(s)	21
BsaJI	CCNNGG	4 cut(s)	90, 130, 291, 533
Bsc4I	CCNNNNNNNGG	1 cut(s)	517
BseBI	CCWGG	2 cut(s)	292, 534
BseDI	CCNNGG	4 cut(s)	90, 130, 291, 533
BseGI	GGATG	1 cut(s)	43
BseLI	CCNNNNNNNGG	1 cut(s)	517
BseXI	GCAGC	2 cut(s)	90, 147
BseYI	CCCAGC	1 cut(s)	437
BsgI	GTGCAG	1 cut(s)	231
Bsh1236I	CGCG	1 cut(s)	560
BshNI	GGYRCC	1 cut(s)	382
BslFI	GGGAC	1 cut(s)	455
BslI	CCNNNNNNNGG	1 cut(s)	517
BsmFI	GGGAC	1 cut(s)	455
BsmI	GAATGC	1 cut(s)	548
Bsp143I	GATC	3 cut(s)	187, 295, 317
Bsp19I	CCATGG	2 cut(s)	90, 130
BspACI	CCGC	2 cut(s)	48, 56
BspFNI	CGCG	1 cut(s)	560
BspLI	GGNNCC	1 cut(s)	384
BspMAI	CTGCAG	1 cut(s)	80
BspOI	GCTAGC	1 cut(s)	21
BspPI	GGATC	1 cut(s)	303
BspT107I	GGYRCC	1 cut(s)	382
BssECI	CCNNGG	4 cut(s)	90, 130, 291, 533
BssMI	GATC	3 cut(s)	187, 295, 317
BssT1I	CCWWGG	2 cut(s)	90, 130
Bst2UI	CCWGG	2 cut(s)	292, 534
Bst4CI	ACNGT	3 cut(s)	484, 526, 607
BstC8I	GCNNGC	1 cut(s)	19
BstDEI	CTNAG	3 cut(s)	227, 312, 358
BstDSI	CCRYGG	2 cut(s)	90, 130
BstF5I	GGATG	1 cut(s)	43
BstFNI	CGCG	1 cut(s)	560
BstHHI	GCGC	3 cut(s)	23, 480, 562
BstKTI	GATC	3 cut(s)	190, 298, 320
BstMBI	GATC	3 cut(s)	187, 295, 317
BstMWI	GCNNNNNNNGC	2 cut(s)	47, 475
BstNI	CCWGG	2 cut(s)	292, 534
BstSCI	CCNGG	2 cut(s)	290, 532
BstSFI	CTRYAG	1 cut(s)	76
BstUI	CGCG	1 cut(s)	560
BstV1I	GCAGC	2 cut(s)	90, 147
BstX2I	RGATCY	2 cut(s)	295, 317
BstYI	RGATCY	2 cut(s)	295, 317
BtgI	CCRYGG	2 cut(s)	90, 130
BtsCI	GGATG	1 cut(s)	43
BtsI	GCAGTG	1 cut(s)	588
BtsIMutI	CAGTG	3 cut(s)	147, 531, 588
Cac8I	GCNNGC	1 cut(s)	19
CfoI	GCGC	3 cut(s)	23, 480, 562
Cfr13I	GGNCC	2 cut(s)	328, 508
CseI	GACGC	1 cut(s)	415
Csp6I	GTAC	3 cut(s)	309, 383, 597
CspCI	CAANNNNNGTGG	2 cut(s)	439, 474
CviAII	CATG	4 cut(s)	91, 131, 251, 517
CviJI	RGCY	5 cut(s)	17, 66, 81, 138, 206
CviKI_1	RGCY	5 cut(s)	17, 66, 81, 138, 206
CviQI	GTAC	3 cut(s)	309, 383, 597
DdeI	CTNAG	3 cut(s)	227, 312, 358
DpnI	GATC	3 cut(s)	189, 297, 319
DpnII	GATC	3 cut(s)	187, 295, 317
DrdI	GACNNNNNNGTC	1 cut(s)	395
DseDI	GACNNNNNNGTC	1 cut(s)	395
Eco130I	CCWWGG	2 cut(s)	90, 130
Eco47I	GGWCC	2 cut(s)	328, 508
EcoRII	CCWGG	2 cut(s)	290, 532
EcoT14I	CCWWGG	2 cut(s)	90, 130
EcoT22I	ATGCAT	2 cut(s)	471, 550
ErhI	CCWWGG	2 cut(s)	90, 130
FaeI	CATG	4 cut(s)	94, 134, 254, 520
FaqI	GGGAC	1 cut(s)	455
FatI	CATG	4 cut(s)	90, 130, 250, 516
FauI	CCCGC	1 cut(s)	55
FauNDI	CATATG	1 cut(s)	37
Fnu4HI	GCNGC	2 cut(s)	79, 136
FokI	GGATG	1 cut(s)	30
Fsp4HI	GCNGC	2 cut(s)	79, 136
FspBI	CTAG	2 cut(s)	18, 594
GlaI	GCGC	3 cut(s)	22, 479, 561
GluI	GCNGC	2 cut(s)	79, 136
GsaI	CCCAGC	1 cut(s)	441
HgaI	GACGC	1 cut(s)	415
HhaI	GCGC	3 cut(s)	23, 480, 562
Hin1II	CATG	4 cut(s)	94, 134, 254, 520
Hin6I	GCGC	3 cut(s)	21, 478, 560
HinP1I	GCGC	3 cut(s)	21, 478, 560
HinfI	GANTC	2 cut(s)	529, 571
HphI	GGTGA	1 cut(s)	532
Hpy188I	TCNGA	2 cut(s)	300, 415
Hpy188III	TCNNGA	1 cut(s)	575
Hpy99I	CGWCG	1 cut(s)	560
HpyAV	CCTTC	1 cut(s)	373
HpyCH4III	ACNGT	3 cut(s)	484, 526, 607
HpyCH4V	TGCA	5 cut(s)	78, 101, 248, 469, 548
HpyF10VI	GCNNNNNNNGC	2 cut(s)	47, 475
HpyF3I	CTNAG	3 cut(s)	227, 312, 358
Hsp92II	CATG	4 cut(s)	94, 134, 254, 520
HspAI	GCGC	3 cut(s)	21, 478, 560
KpnI	GGTACC	1 cut(s)	386
Kzo9I	GATC	3 cut(s)	187, 295, 317
LpnPI	CCDG	9 cut(s)	24, 192, 277, 304, 399, 423, 436, 519, 546
Lsp1109I	GCAGC	2 cut(s)	90, 147
MaeI	CTAG	2 cut(s)	18, 594
MaeIII	GTNAC	2 cut(s)	145, 520
MalI	GATC	3 cut(s)	189, 297, 319
MboI	GATC	3 cut(s)	187, 295, 317
MboII	GAAGA	1 cut(s)	312
MfeI	CAATTG	1 cut(s)	102
MflI	RGATCY	2 cut(s)	295, 317
MluCI	AATT	3 cut(s)	102, 332, 344
MnlI	CCTC	1 cut(s)	78
Mph1103I	ATGCAT	2 cut(s)	471, 550
MseI	TTAA	2 cut(s)	486, 585
MspA1I	CMGCKG	1 cut(s)	50
MspR9I	CCNGG	2 cut(s)	292, 534
MunI	CAATTG	1 cut(s)	102
Mva1269I	GAATGC	1 cut(s)	548
MvaI	CCWGG	2 cut(s)	292, 534
MvnI	CGCG	1 cut(s)	560
MwoI	GCNNNNNNNGC	2 cut(s)	47, 475
NcoI	CCATGG	2 cut(s)	90, 130
NdeI	CATATG	1 cut(s)	37
NdeII	GATC	3 cut(s)	187, 295, 317
NheI	GCTAGC	1 cut(s)	17
NlaIII	CATG	4 cut(s)	94, 134, 254, 520
NlaIV	GGNNCC	1 cut(s)	384
NmuCI	GTSAC	2 cut(s)	145, 520
NsiI	ATGCAT	2 cut(s)	471, 550
PctI	GAATGC	1 cut(s)	548
PfeI	GAWTC	2 cut(s)	529, 571
PflMI	CCANNNNNTGG	1 cut(s)	517
PkrI	GCNGC	2 cut(s)	80, 137
Psp6I	CCWGG	2 cut(s)	290, 532
PspFI	CCCAGC	1 cut(s)	437
PspGI	CCWGG	2 cut(s)	290, 532
PspN4I	GGNNCC	1 cut(s)	384
PspPI	GGNCC	2 cut(s)	328, 508
PstI	CTGCAG	1 cut(s)	80
PsuI	RGATCY	2 cut(s)	295, 317
RsaI	GTAC	3 cut(s)	310, 384, 598
RsaNI	GTAC	3 cut(s)	309, 383, 597
SaqAI	TTAA	2 cut(s)	486, 585
SatI	GCNGC	2 cut(s)	79, 136
Sau3AI	GATC	3 cut(s)	187, 295, 317
Sau96I	GGNCC	2 cut(s)	328, 508
ScaI	AGTACT	2 cut(s)	310, 598
ScrFI	CCNGG	2 cut(s)	292, 534
SetI	ASST	6 cut(s)	19, 140, 384, 388, 399, 617
SfcI	CTRYAG	1 cut(s)	76
SinI	GGWCC	2 cut(s)	328, 508
Sse9I	AATT	3 cut(s)	102, 332, 344
SsiI	CCGC	2 cut(s)	48, 56
SspMI	CTAG	2 cut(s)	18, 594
StyD4I	CCNGG	2 cut(s)	290, 532
StyI	CCWWGG	2 cut(s)	90, 130
TaaI	ACNGT	3 cut(s)	484, 526, 607
TasI	AATT	3 cut(s)	102, 332, 344
TatI	WGTACW	2 cut(s)	308, 596
TfiI	GAWTC	2 cut(s)	529, 571
Tru1I	TTAA	2 cut(s)	486, 585
Tru9I	TTAA	2 cut(s)	486, 585
TscAI	CASTG	3 cut(s)	154, 531, 595
TseFI	GTSAC	2 cut(s)	145, 520
TseI	GCWGC	2 cut(s)	78, 135
Tsp45I	GTSAC	2 cut(s)	145, 520
TspDTI	ATGAA	2 cut(s)	505, 541
TspRI	CASTG	3 cut(s)	154, 531, 595
Van91I	CCANNNNNTGG	1 cut(s)	517
VpaK11BI	GGWCC	2 cut(s)	328, 508
XspI	CTAG	2 cut(s)	18, 594
ZrmI	AGTACT	2 cut(s)	310, 598
Zsp2I	ATGCAT	2 cut(s)	471, 550

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.