Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0001888

Physical Location & Seq

Genomic Coordinates Forward (+)

26299010 .. 26300651

Gene Structure 1642 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1182900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGAAACAAGCAGAACCTAGCGCGCCACCGTTAGCATACGCCAATTCGGCGCCAACAGCGTATGCCAATCCGGGGCCAACATCGTCTGCGAATTCGGCGCCAATAGCGTATGCAAATCCGGCGCCAATAGCGTATGCAAATCCCGCCGTTGCAATCATCAGCCCCCATTTCTGCAGTCCTCACCCTGTGGATATTGCAATTGTCAGAAAAGTTCTTACCATAACAGATGGAAACTTTGTGGTCACAGATATCAATGATAAGATCATCTTTAAAGTGAAGGGAGTTCGATGGAGCCGTCATGATCGTCGAGTCTTGCTCGATACTGCCGGATATCCTATTGTCACTCTAAGAAAGAAGTTGATGAGTGCACATGAAAGATGGCAAGTCTTCAGGGGGGATAGCAAAGACTCAAGGAATCTGATTTTTAGTGCCAAGAGATCTTCACTGCTGCAATTTAATACCAAACTGGATGTTTTCTTAGCACAAAATACAGCAGAGAATGCACCTGACTTCAGAGTCAAAGGAAGTTGGTTTGAACGATCTTGTACCATATATGCTGGGAACTCCTCCACAATCATTGCCCAAATGCATAAGAAGCGAACAGTTGCAAGCATGTTGATTGGCAAGGACAATTTCATGGTGACAGTGTATCCCGGGATTGACTACGCGTTCATTGTCGCGCTTATTGTGATTCTTGATGAGATTAATAGTGATGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009725 GO:0009751 GO:0010033 GO:0014070 GO:0042221 GO:0042493 GO:0043207 GO:0046677 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0098542 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOR

Protein Analysis

240

Amino Acids

26.34

Weight (kDa)

9.41

Isoelectric Point (pI)

48.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LOR	PF04525	64 - 233	2e-50	LURP-one-related

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001888)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33840 AT1G33840 AT2G14560 AT2G14560 AT2G14560 AT2G14560 AT3G11740 AT5G01750 AT5G01750
fragaria_vesca	FvH4_6g10350 FvH4_6g10360 FvH4_6g10360
malus_domestica	MD04G1169400.v1.1 MD12G1182900.v1.1
prunus_persica	Prupe.6G287400_v2.0.a1 Prupe.6G287500_v2.0.a1 Prupe.6G287900_v2.0.a1
pyrus_communis	pycom04g15000 pycom12g17170
rosa_chinensis	RchiOBHm_Chr3g0461171 RchiOBHm_Chr3g0461181 RchiOBHm_Chr3g0461261
rosa_laevigata	RLG00000024947 RLG00000024948
rosa_multiflora	Rmu_sc0009344.1_g000007 Rmu_sc0009344.1_g000008
rosa_roxburghii	Rroxscaffold_6G00418740 Rroxscaffold_6G00418760 Rroxscaffold_6G00418810 Rroxscaffold_6G00418820
rosa_rugosa	Rorug03G0048800 Rorug03G0048800 Rorug03G0048900 Rorug03G0049300
rosa_samantha	Rh3AG106000 Rh3AG106100 Rh3BG110300 Rh3BG110400 Rh3BG110800 Rh3CG111900 Rh3CG112000 Rh3DG112100 Rh3DG112200 Rh3DG112600
rosa_wichuraiana	Rw3G009090 Rw3G009130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	515
AccB1I	GGYRCC	3 cut(s)	49, 97, 121
AccII	CGCG	3 cut(s)	23, 668, 680
AciI	CCGC	1 cut(s)	144
AcsI	RAATTY	1 cut(s)	91
AcuI	CTGAAG	2 cut(s)	373, 496
AcyI	GRCGYC	3 cut(s)	50, 98, 122
AdeI	CACNNNGTG	1 cut(s)	187
AfaI	GTAC	1 cut(s)	547
AfiI	CCNNNNNNNGG	1 cut(s)	72
AflIII	ACRYGT	1 cut(s)	666
AgsI	TTSAA	1 cut(s)	536
Alw21I	GWGCWC	1 cut(s)	370
Alw44I	GTGCAC	1 cut(s)	366
Ama87I	CYCGRG	1 cut(s)	653
AoxI	GGCC	1 cut(s)	74
ApaLI	GTGCAC	1 cut(s)	366
ApeKI	GCWGC	1 cut(s)	448
ApoI	RAATTY	1 cut(s)	91
AseI	ATTAAT	1 cut(s)	705
AspLEI	GCGC	6 cut(s)	23, 25, 52, 100, 124, 682
AspS9I	GGNCC	1 cut(s)	74
AsuC2I	CCSGG	3 cut(s)	72, 654, 655
AsuHPI	GGTGA	2 cut(s)	173, 652
AvaI	CYCGRG	1 cut(s)	653
BaeGI	GKGCMC	1 cut(s)	370
BanI	GGYRCC	3 cut(s)	49, 97, 121
BbsI	GAAGAC	1 cut(s)	379
Bbv12I	GWGCWC	1 cut(s)	370
BbvI	GCAGC	1 cut(s)	435
BccI	CCATC	3 cut(s)	221, 282, 372
BceAI	ACGGC	2 cut(s)	131, 279
BciVI	GTATCC	1 cut(s)	660
BcnI	CCSGG	3 cut(s)	72, 654, 655
BfaI	CTAG	1 cut(s)	18
BfmI	CTRYAG	1 cut(s)	172
BfoI	RGCGCY	3 cut(s)	53, 101, 125
BfuI	GTATCC	1 cut(s)	660
BglI	GCCNNNNNGGC	1 cut(s)	47
BglII	AGATCT	1 cut(s)	437
BisI	GCNGC	1 cut(s)	449
BlsI	GCNGC	1 cut(s)	450
Bme1390I	CCNGG	3 cut(s)	72, 654, 655
BmeT110I	CYCGRG	1 cut(s)	653
BmgT120I	GGNCC	1 cut(s)	74
BmiI	GGNNCC	5 cut(s)	51, 75, 99, 123, 293
BmrFI	CCNGG	3 cut(s)	72, 654, 655
BpiI	GAAGAC	1 cut(s)	379
BplI	GAGNNNNNCTC	2 cut(s)	300, 332
BpuEI	CTTGAG	1 cut(s)	394
BpuMI	CCSGG	3 cut(s)	72, 654, 655
BsaHI	GRCGYC	3 cut(s)	50, 98, 122
BsaJI	CCNNGG	2 cut(s)	71, 653
Bsc4I	CCNNNNNNNGG	1 cut(s)	72
Bse1I	ACTGG	1 cut(s)	471
Bse3DI	GCAATG	1 cut(s)	576
BseDI	CCNNGG	2 cut(s)	71, 653
BseGI	GGATG	1 cut(s)	475
BseLI	CCNNNNNNNGG	1 cut(s)	72
BseMI	GCAATG	1 cut(s)	576
BseNI	ACTGG	1 cut(s)	471
BsePI	GCGCGC	1 cut(s)	21
BseRI	GAGGAG	1 cut(s)	556
BseSI	GKGCMC	1 cut(s)	370
BseXI	GCAGC	1 cut(s)	435
BseYI	CCCAGC	1 cut(s)	557
Bsh1236I	CGCG	3 cut(s)	23, 668, 680
BshFI	GGCC	1 cut(s)	76
BshNI	GGYRCC	3 cut(s)	49, 97, 121
BsiHKAI	GWGCWC	1 cut(s)	370
BsiHKCI	CYCGRG	1 cut(s)	653
BsiSI	CCGG	4 cut(s)	71, 119, 327, 654
BslI	CCNNNNNNNGG	1 cut(s)	72
BsmI	GAATGC	1 cut(s)	505
BsnI	GGCC	1 cut(s)	76
BsoBI	CYCGRG	1 cut(s)	653
Bsp1286I	GDGCHC	1 cut(s)	370
Bsp143I	GATC	4 cut(s)	261, 301, 437, 539
BspACI	CCGC	1 cut(s)	144
BspANI	GGCC	1 cut(s)	76
BspFNI	CGCG	3 cut(s)	23, 668, 680
BspHI	TCATGA	1 cut(s)	298
BspLI	GGNNCC	5 cut(s)	51, 75, 99, 123, 293
BspMAI	CTGCAG	1 cut(s)	176
BspT107I	GGYRCC	3 cut(s)	49, 97, 121
BsrDI	GCAATG	1 cut(s)	576
BsrI	ACTGG	1 cut(s)	471
BssECI	CCNNGG	2 cut(s)	71, 653
BssHII	GCGCGC	1 cut(s)	21
BssMI	GATC	4 cut(s)	261, 301, 437, 539
BssNI	GRCGYC	3 cut(s)	50, 98, 122
Bst4CI	ACNGT	3 cut(s)	30, 604, 646
BstACI	GRCGYC	3 cut(s)	50, 98, 122
BstAPI	GCANNNNNTGC	1 cut(s)	500
BstC8I	GCNNGC	2 cut(s)	23, 610
BstDEI	CTNAG	2 cut(s)	347, 478
BstF5I	GGATG	1 cut(s)	475
BstFNI	CGCG	3 cut(s)	23, 668, 680
BstH2I	RGCGCY	3 cut(s)	53, 101, 125
BstHHI	GCGC	6 cut(s)	23, 25, 52, 100, 124, 682
BstKTI	GATC	4 cut(s)	264, 304, 440, 542
BstMBI	GATC	4 cut(s)	261, 301, 437, 539
BstMWI	GCNNNNNNNGC	9 cut(s)	47, 56, 95, 104, 119, 128, 143, 500, 595
BstNSI	RCATGY	1 cut(s)	616
BstSCI	CCNGG	3 cut(s)	70, 652, 653
BstSFI	CTRYAG	1 cut(s)	172
BstSLI	GKGCMC	1 cut(s)	370
BstUI	CGCG	3 cut(s)	23, 668, 680
BstV1I	GCAGC	1 cut(s)	435
BstV2I	GAAGAC	1 cut(s)	379
BstX2I	RGATCY	1 cut(s)	437
BstYI	RGATCY	1 cut(s)	437
BsuI	GTATCC	1 cut(s)	660
BsuRI	GGCC	1 cut(s)	76
BtsCI	GGATG	1 cut(s)	475
BtsI	GCAGTG	1 cut(s)	443
BtsIMutI	CAGTG	2 cut(s)	443, 651
Cac8I	GCNNGC	2 cut(s)	23, 610
CciI	TCATGA	1 cut(s)	298
CfoI	GCGC	6 cut(s)	23, 25, 52, 100, 124, 682
Cfr13I	GGNCC	1 cut(s)	74
Cfr9I	CCCGGG	1 cut(s)	653
Csp6I	GTAC	1 cut(s)	546
CspCI	CAANNNNNGTGG	2 cut(s)	559, 594
CviAII	CATG	4 cut(s)	299, 371, 613, 637
CviJI	RGCY	3 cut(s)	76, 162, 294
CviKI_1	RGCY	3 cut(s)	76, 162, 294
CviQI	GTAC	1 cut(s)	546
DdeI	CTNAG	2 cut(s)	347, 478
DinI	GGCGCC	3 cut(s)	51, 99, 123
DpnI	GATC	4 cut(s)	263, 303, 439, 541
DpnII	GATC	4 cut(s)	261, 301, 437, 539
DraI	TTTAAA	1 cut(s)	271
DraIII	CACNNNGTG	1 cut(s)	187
DrdI	GACNNNNNNGTC	1 cut(s)	515
DseDI	GACNNNNNNGTC	1 cut(s)	515
Eco32I	GATATC	2 cut(s)	250, 332
Eco57I	CTGAAG	2 cut(s)	373, 496
Eco88I	CYCGRG	1 cut(s)	653
EcoRI	GAATTC	1 cut(s)	91
EcoRV	GATATC	2 cut(s)	250, 332
EcoT22I	ATGCAT	1 cut(s)	591
EgeI	GGCGCC	3 cut(s)	51, 99, 123
EheI	GGCGCC	3 cut(s)	51, 99, 123
FaeI	CATG	4 cut(s)	302, 374, 616, 640
FalI	AAGNNNNNCTT	2 cut(s)	251, 283
FatI	CATG	4 cut(s)	298, 370, 612, 636
FauI	CCCGC	1 cut(s)	151
Fnu4HI	GCNGC	1 cut(s)	449
FokI	GGATG	1 cut(s)	482
Fsp4HI	GCNGC	1 cut(s)	449
FspBI	CTAG	1 cut(s)	18
GlaI	GCGC	6 cut(s)	22, 24, 51, 99, 123, 681
GluI	GCNGC	1 cut(s)	449
GsaI	CCCAGC	1 cut(s)	561
HaeII	RGCGCY	3 cut(s)	53, 101, 125
HaeIII	GGCC	1 cut(s)	76
HapII	CCGG	4 cut(s)	71, 119, 327, 654
HhaI	GCGC	6 cut(s)	23, 25, 52, 100, 124, 682
Hin1I	GRCGYC	3 cut(s)	50, 98, 122
Hin1II	CATG	4 cut(s)	302, 374, 616, 640
Hin6I	GCGC	6 cut(s)	21, 23, 50, 98, 122, 680
HinP1I	GCGC	6 cut(s)	21, 23, 50, 98, 122, 680
HinfI	GANTC	5 cut(s)	309, 407, 415, 516, 691
HpaII	CCGG	4 cut(s)	71, 119, 327, 654
HphI	GGTGA	2 cut(s)	173, 652
Hpy166II	GTNNAC	1 cut(s)	368
Hpy188I	TCNGA	3 cut(s)	206, 420, 515
Hpy188III	TCNNGA	2 cut(s)	299, 695
Hpy8I	GTNNAC	1 cut(s)	368
Hpy99I	CGWCG	1 cut(s)	309
HpyAV	CCTTC	1 cut(s)	271
HpyCH4III	ACNGT	3 cut(s)	30, 604, 646
HpyF10VI	GCNNNNNNNGC	9 cut(s)	47, 56, 95, 104, 119, 128, 143, 500, 595
HpyF3I	CTNAG	2 cut(s)	347, 478
Hsp92I	GRCGYC	3 cut(s)	50, 98, 122
Hsp92II	CATG	4 cut(s)	302, 374, 616, 640
HspAI	GCGC	6 cut(s)	21, 23, 50, 98, 122, 680
KasI	GGCGCC	3 cut(s)	49, 97, 121
Kzo9I	GATC	4 cut(s)	261, 301, 437, 539
LmnI	GCTCC	1 cut(s)	291
LpnPI	CCDG	9 cut(s)	84, 132, 198, 340, 376, 452, 519, 543, 667
Lsp1109I	GCAGC	1 cut(s)	435
MaeI	CTAG	1 cut(s)	18
MaeIII	GTNAC	3 cut(s)	241, 340, 640
MalI	GATC	4 cut(s)	263, 303, 439, 541
MboI	GATC	4 cut(s)	261, 301, 437, 539
MboII	GAAGA	2 cut(s)	379, 432
MfeI	CAATTG	1 cut(s)	198
MflI	RGATCY	1 cut(s)	437
MhlI	GDGCHC	1 cut(s)	370
MluCI	AATT	5 cut(s)	43, 91, 198, 452, 631
MluI	ACGCGT	1 cut(s)	666
Mly113I	GGCGCC	3 cut(s)	50, 98, 122
MlyI	GAGTC	3 cut(s)	318, 401, 525
MnlI	CCTC	2 cut(s)	189, 577
Mph1103I	ATGCAT	1 cut(s)	591
MseI	TTAA	4 cut(s)	270, 456, 705, 718
MspI	CCGG	4 cut(s)	71, 119, 327, 654
MspR9I	CCNGG	3 cut(s)	72, 654, 655
MunI	CAATTG	1 cut(s)	198
Mva1269I	GAATGC	1 cut(s)	505
MvnI	CGCG	3 cut(s)	23, 668, 680
MwoI	GCNNNNNNNGC	9 cut(s)	47, 56, 95, 104, 119, 128, 143, 500, 595
NarI	GGCGCC	3 cut(s)	50, 98, 122
NciI	CCSGG	3 cut(s)	72, 654, 655
NdeII	GATC	4 cut(s)	261, 301, 437, 539
NlaIII	CATG	4 cut(s)	302, 374, 616, 640
NlaIV	GGNNCC	5 cut(s)	51, 75, 99, 123, 293
NmuCI	GTSAC	3 cut(s)	241, 340, 640
NsiI	ATGCAT	1 cut(s)	591
NspI	RCATGY	1 cut(s)	616
PagI	TCATGA	1 cut(s)	298
PauI	GCGCGC	1 cut(s)	21
PcsI	WCGNNNNNNNCGW	1 cut(s)	292
PctI	GAATGC	1 cut(s)	505
PfeI	GAWTC	2 cut(s)	415, 691
PkrI	GCNGC	1 cut(s)	450
PleI	GAGTC	3 cut(s)	317, 401, 524
PluTI	GGCGCC	3 cut(s)	53, 101, 125
PpsI	GAGTC	3 cut(s)	317, 401, 524
PshBI	ATTAAT	1 cut(s)	705
PspFI	CCCAGC	1 cut(s)	557
PspN4I	GGNNCC	5 cut(s)	51, 75, 99, 123, 293
PspPI	GGNCC	1 cut(s)	74
PstI	CTGCAG	1 cut(s)	176
PsuI	RGATCY	1 cut(s)	437
PteI	GCGCGC	1 cut(s)	21
RsaI	GTAC	1 cut(s)	547
RsaNI	GTAC	1 cut(s)	546
SaqAI	TTAA	4 cut(s)	270, 456, 705, 718
SatI	GCNGC	1 cut(s)	449
Sau3AI	GATC	4 cut(s)	261, 301, 437, 539
Sau96I	GGNCC	1 cut(s)	74
SchI	GAGTC	3 cut(s)	318, 401, 525
ScrFI	CCNGG	3 cut(s)	72, 654, 655
SduI	GDGCHC	1 cut(s)	370
SetI	ASST	2 cut(s)	19, 508
SfcI	CTRYAG	1 cut(s)	172
SfoI	GGCGCC	3 cut(s)	51, 99, 123
SmaI	CCCGGG	1 cut(s)	655
SmlI	CTYRAG	1 cut(s)	409
SmoI	CTYRAG	1 cut(s)	409
Sse9I	AATT	5 cut(s)	43, 91, 198, 452, 631
SsiI	CCGC	1 cut(s)	144
SspDI	GGCGCC	3 cut(s)	49, 97, 121
SspMI	CTAG	1 cut(s)	18
StyD4I	CCNGG	3 cut(s)	70, 652, 653
TaaI	ACNGT	3 cut(s)	30, 604, 646
TaqI	TCGA	3 cut(s)	286, 307, 318
TasI	AATT	5 cut(s)	43, 91, 198, 452, 631
TfiI	GAWTC	2 cut(s)	415, 691
Tru1I	TTAA	4 cut(s)	270, 456, 705, 718
Tru9I	TTAA	4 cut(s)	270, 456, 705, 718
TscAI	CASTG	2 cut(s)	450, 651
TseFI	GTSAC	3 cut(s)	241, 340, 640
TseI	GCWGC	1 cut(s)	448
Tsp45I	GTSAC	3 cut(s)	241, 340, 640
TspDTI	ATGAA	4 cut(s)	17, 387, 625, 661
TspMI	CCCGGG	1 cut(s)	653
TspRI	CASTG	2 cut(s)	450, 651
VneI	GTGCAC	1 cut(s)	366
VspI	ATTAAT	1 cut(s)	705
XapI	RAATTY	1 cut(s)	91
XceI	RCATGY	1 cut(s)	616
XmaI	CCCGGG	1 cut(s)	653
XspI	CTAG	1 cut(s)	18
Zsp2I	ATGCAT	1 cut(s)	591

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.