Rorug03G0049300

LURP-one-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0001888
Physical Location & Seq
Forward (+)
3839683 .. 3841651
1969 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0049300.1

Sequence Viewer

Length: 816 bp
ATGGAAGAAGGGCTACTAACTCTGTCAGGGTCAAATGGAGCTTCAAGTGATTGCAGTGCCGTCATAACTCCAGGAGGGTTCTCCTCCTCGGCCACCCCCGTTGTCGTTCTGAGCGCATTGGTGGCTCTTTGTGGTTCCTTTGTCTATGGCTGTCAGGCTGTGCTGCAAGTTACTCTCAAAGTAGGATATTCATCCTCTGCTGAGTCAGGAATTTTGGAAGACTTGGGCCTTACTATTGCAGCATACTCACTTTTTGGTTCACTTTTTAGTCCCAATGCAGTATCTAGTTATGCAAGTTCGATATTTGTAGATGCGGGTTTTTCAACTAGTGTTGGGACTATATCAATTGCTCTTATTGGGATTCCTGGTGTTGTCTTGAGTGTGCTCTTAACAGACAAAGTTGGAAGACGACCACTTCTAATGGTTTCGGCTGGTGGATTGTGCTTGAGTTTGTTTCTTGTGGGATTGGCATTCTGCTTTCAGGACCTCAATCTGTGGACGGAGGTCACTCCCAATTTGGTGTTCATCGGCTTGATGGGTCAAAGTGTATCATACACAATAGGCGTAGCAGGATTACCCTGGGTTATTATGTCAGAGATATTTCCCATAAACGTTAAAGGTTCAGCCGGAAGCTTGTTGAGTTTGGTAAGTTGGTCCTCTGCTTGGATAGTAACATACAGCTTCAATTTCATGATGGAATGGAGCTCAGCAAGTATGTCTCTCTCTCTCAGTATCTTGCTTCTCAAGTTATGTACAGTAATAATTGGTGTCACACTTCCCTACTTCAGGCACATTTTTCTTCTTCTCAGCCATTAG

Protein Analysis

271

Amino Acids

28.29

Weight (kDa)

4.77

Isoelectric Point (pI)

31.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sugar_tr PF00083 78 - 262 2.5e-21 Sugar (and other) transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 314
AclI AACGTT 1 cut(s) 612
AcoI YGGCCR 1 cut(s) 90
AcsI RAATTY 1 cut(s) 210
AcuI CTGAAG 1 cut(s) 769
AfaI GTAC 1 cut(s) 754
AfiI CCNNNNNNNGG 2 cut(s) 663, 786
AgsI TTSAA 3 cut(s) 45, 324, 685
AhlI ACTAGT 1 cut(s) 326
AjnI CCWGG 3 cut(s) 70, 364, 578
AjuI GAANNNNNNNTTGG 2 cut(s) 506, 538
AluBI AGCT 4 cut(s) 41, 633, 681, 705
AluI AGCT 4 cut(s) 41, 633, 681, 705
Alw21I GWGCWC 2 cut(s) 387, 707
Alw26I GTCTC 1 cut(s) 723
AoxI GGCC 2 cut(s) 90, 226
ApeKI GCWGC 2 cut(s) 163, 239
ApoI RAATTY 1 cut(s) 210
AspLEI GCGC 1 cut(s) 116
AspS9I GGNCC 3 cut(s) 226, 484, 654
AvaII GGWCC 2 cut(s) 484, 654
BanII GRGCYC 1 cut(s) 707
BarI GAAGNNNNNNTAC 1 cut(s) 29
BbsI GAAGAC 2 cut(s) 225, 412
Bbv12I GWGCWC 2 cut(s) 387, 707
BbvI GCAGC 2 cut(s) 150, 251
BccI CCATC 2 cut(s) 529, 688
BceAI ACGGC 1 cut(s) 44
BciT130I CCWGG 3 cut(s) 72, 366, 580
BcoDI GTCTC 1 cut(s) 723
BcuI ACTAGT 1 cut(s) 326
BfaI CTAG 2 cut(s) 285, 327
BisI GCNGC 2 cut(s) 164, 240
BlpI GCTNAGC 1 cut(s) 706
BlsI GCNGC 2 cut(s) 165, 241
Bme1390I CCNGG 3 cut(s) 72, 366, 580
Bme18I GGWCC 2 cut(s) 484, 654
BmgT120I GGNCC 3 cut(s) 226, 484, 654
BmiI GGNNCC 1 cut(s) 136
BmrFI CCNGG 3 cut(s) 72, 366, 580
BmsI GCATC 1 cut(s) 301
BoxI GACNNNNGTC 1 cut(s) 503
BpiI GAAGAC 2 cut(s) 225, 412
BpmI CTGGAG 1 cut(s) 54
Bpu1102I GCTNAGC 1 cut(s) 706
BpuEI CTTGAG 3 cut(s) 397, 466, 728
BsaBI GATNNNNATC 1 cut(s) 190
BsaJI CCNNGG 3 cut(s) 87, 578, 579
Bsc4I CCNNNNNNNGG 2 cut(s) 663, 786
Bse8I GATNNNNATC 1 cut(s) 190
BseBI CCWGG 3 cut(s) 72, 366, 580
BseDI CCNNGG 3 cut(s) 87, 578, 579
BseGI GGATG 1 cut(s) 191
BseJI GATNNNNATC 1 cut(s) 190
BseLI CCNNNNNNNGG 2 cut(s) 663, 786
BseMII CTCAG 4 cut(s) 101, 192, 720, 742
BseRI GAGGAG 2 cut(s) 73, 76
BseXI GCAGC 2 cut(s) 150, 251
BshFI GGCC 2 cut(s) 92, 228
BsiHKAI GWGCWC 2 cut(s) 387, 707
BsiSI CCGG 1 cut(s) 627
BslFI GGGAC 2 cut(s) 255, 349
BslI CCNNNNNNNGG 2 cut(s) 663, 786
BsmAI GTCTC 1 cut(s) 723
BsmFI GGGAC 2 cut(s) 255, 349
BsmI GAATGC 1 cut(s) 470
BsnI GGCC 2 cut(s) 92, 228
Bsp1286I GDGCHC 2 cut(s) 387, 707
Bsp1407I TGTACA 1 cut(s) 752
Bsp1720I GCTNAGC 1 cut(s) 706
BspACI CCGC 1 cut(s) 314
BspANI GGCC 2 cut(s) 92, 228
BspCNI CTCAG 4 cut(s) 102, 193, 719, 741
BspHI TCATGA 1 cut(s) 690
BspLI GGNNCC 1 cut(s) 136
BsrGI TGTACA 1 cut(s) 752
BssECI CCNNGG 3 cut(s) 87, 578, 579
Bst2UI CCWGG 3 cut(s) 72, 366, 580
Bst4CI ACNGT 1 cut(s) 757
BstAUI TGTACA 1 cut(s) 752
BstDEI CTNAG 5 cut(s) 110, 201, 706, 728, 806
BstENI CCTNNNNNAGG 1 cut(s) 784
BstF5I GGATG 1 cut(s) 191
BstHHI GCGC 1 cut(s) 116
BstMAI GTCTC 1 cut(s) 723
BstMWI GCNNNNNNNGC 1 cut(s) 122
BstNI CCWGG 3 cut(s) 72, 366, 580
BstPAI GACNNNNGTC 1 cut(s) 503
BstSCI CCNGG 3 cut(s) 70, 364, 578
BstV1I GCAGC 2 cut(s) 150, 251
BstV2I GAAGAC 2 cut(s) 225, 412
BsuRI GGCC 2 cut(s) 92, 228
BtsCI GGATG 1 cut(s) 191
BtsI GCAGTG 1 cut(s) 61
BtsIMutI CAGTG 1 cut(s) 61
CciI TCATGA 1 cut(s) 690
CfoI GCGC 1 cut(s) 116
Cfr13I GGNCC 3 cut(s) 226, 484, 654
Csp6I GTAC 1 cut(s) 753
CspCI CAANNNNNGTGG 2 cut(s) 82, 117
CviAII CATG 1 cut(s) 691
CviQI GTAC 1 cut(s) 753
DdeI CTNAG 5 cut(s) 110, 201, 706, 728, 806
EaeI YGGCCR 1 cut(s) 90
Ecl136II GAGCTC 1 cut(s) 705
Eco24I GRGCYC 1 cut(s) 707
Eco47I GGWCC 2 cut(s) 484, 654
Eco53kI GAGCTC 1 cut(s) 705
Eco57I CTGAAG 1 cut(s) 769
EcoICRI GAGCTC 1 cut(s) 705
EcoNI CCTNNNNNAGG 1 cut(s) 784
EcoO109I RGGNCCY 1 cut(s) 484
EcoRII CCWGG 3 cut(s) 70, 364, 578
EcoT38I GRGCYC 1 cut(s) 707
FaeI CATG 1 cut(s) 694
FaqI GGGAC 2 cut(s) 255, 349
FatI CATG 1 cut(s) 690
FauI CCCGC 1 cut(s) 307
Fnu4HI GCNGC 2 cut(s) 164, 240
FokI GGATG 1 cut(s) 178
FriOI GRGCYC 1 cut(s) 707
Fsp4HI GCNGC 2 cut(s) 164, 240
FspBI CTAG 2 cut(s) 285, 327
GlaI GCGC 1 cut(s) 115
GluI GCNGC 2 cut(s) 164, 240
GsuI CTGGAG 1 cut(s) 54
HaeIII GGCC 2 cut(s) 92, 228
HapII CCGG 1 cut(s) 627
HhaI GCGC 1 cut(s) 116
Hin1II CATG 1 cut(s) 694
Hin6I GCGC 1 cut(s) 114
HinP1I GCGC 1 cut(s) 114
HindIII AAGCTT 1 cut(s) 631
HinfI GANTC 2 cut(s) 203, 361
HpaII CCGG 1 cut(s) 627
Hpy166II GTNNAC 2 cut(s) 260, 498
Hpy188I TCNGA 2 cut(s) 111, 595
Hpy188III TCNNGA 4 cut(s) 207, 376, 482, 691
Hpy8I GTNNAC 2 cut(s) 260, 498
HpyCH4III ACNGT 1 cut(s) 757
HpyCH4IV ACGT 1 cut(s) 612
HpyCH4V TGCA 5 cut(s) 54, 166, 239, 278, 293
HpyF10VI GCNNNNNNNGC 1 cut(s) 122
HpyF3I CTNAG 5 cut(s) 110, 201, 706, 728, 806
HpySE526I ACGT 1 cut(s) 612
Hsp92II CATG 1 cut(s) 694
HspAI GCGC 1 cut(s) 114
LmnI GCTCC 2 cut(s) 38, 702
Lsp1109I GCAGC 2 cut(s) 150, 251
LweI GCATC 1 cut(s) 301
MaeI CTAG 2 cut(s) 285, 327
MaeII ACGT 1 cut(s) 612
MaeIII GTNAC 4 cut(s) 169, 505, 670, 769
MboII GAAGA 5 cut(s) 17, 230, 417, 791, 794
MfeI CAATTG 1 cut(s) 345
MhlI GDGCHC 2 cut(s) 387, 707
MluCI AATT 5 cut(s) 210, 345, 514, 685, 762
MlyI GAGTC 1 cut(s) 212
MmeI TCCRAC 1 cut(s) 382
MnlI CCTC 7 cut(s) 68, 94, 97, 205, 496, 497, 667
MseI TTAA 2 cut(s) 389, 615
MspI CCGG 1 cut(s) 627
MspR9I CCNGG 3 cut(s) 72, 366, 580
MunI CAATTG 1 cut(s) 345
Mva1269I GAATGC 1 cut(s) 470
MvaI CCWGG 3 cut(s) 72, 366, 580
MwoI GCNNNNNNNGC 1 cut(s) 122
NlaIII CATG 1 cut(s) 694
NlaIV GGNNCC 1 cut(s) 136
NmeAIII GCCGAG 1 cut(s) 68
NmuCI GTSAC 2 cut(s) 505, 769
PagI TCATGA 1 cut(s) 690
PasI CCCWGGG 1 cut(s) 579
PctI GAATGC 1 cut(s) 470
PfeI GAWTC 1 cut(s) 361
PfoI TCCNGGA 1 cut(s) 70
PkrI GCNGC 2 cut(s) 165, 241
PleI GAGTC 1 cut(s) 211
PpsI GAGTC 1 cut(s) 211
PpuMI RGGWCCY 1 cut(s) 484
PshAI GACNNNNGTC 1 cut(s) 503
Psp124BI GAGCTC 1 cut(s) 707
Psp1406I AACGTT 1 cut(s) 612
Psp5II RGGWCCY 1 cut(s) 484
Psp6I CCWGG 3 cut(s) 70, 364, 578
PspGI CCWGG 3 cut(s) 70, 364, 578
PspN4I GGNNCC 1 cut(s) 136
PspPI GGNCC 3 cut(s) 226, 484, 654
PspPPI RGGWCCY 1 cut(s) 484
RsaI GTAC 1 cut(s) 754
RsaNI GTAC 1 cut(s) 753
SacI GAGCTC 1 cut(s) 707
SaqAI TTAA 2 cut(s) 389, 615
SatI GCNGC 2 cut(s) 164, 240
Sau96I GGNCC 3 cut(s) 226, 484, 654
SchI GAGTC 1 cut(s) 212
ScrFI CCNGG 3 cut(s) 72, 366, 580
SduI GDGCHC 2 cut(s) 387, 707
SetI ASST 8 cut(s) 43, 489, 507, 615, 622, 635, 683, 707
SfaNI GCATC 1 cut(s) 301
SinI GGWCC 2 cut(s) 484, 654
SmlI CTYRAG 3 cut(s) 376, 445, 743
SmoI CTYRAG 3 cut(s) 376, 445, 743
SpeI ACTAGT 1 cut(s) 326
Sse9I AATT 5 cut(s) 210, 345, 514, 685, 762
SsiI CCGC 1 cut(s) 314
SspMI CTAG 2 cut(s) 285, 327
SstI GAGCTC 1 cut(s) 707
StyD4I CCNGG 3 cut(s) 70, 364, 578
TaaI ACNGT 1 cut(s) 757
TaiI ACGT 1 cut(s) 615
TaqI TCGA 1 cut(s) 299
TasI AATT 5 cut(s) 210, 345, 514, 685, 762
TatI WGTACW 1 cut(s) 752
TfiI GAWTC 1 cut(s) 361
Tru1I TTAA 2 cut(s) 389, 615
Tru9I TTAA 2 cut(s) 389, 615
TscAI CASTG 1 cut(s) 61
TseFI GTSAC 2 cut(s) 505, 769
TseI GCWGC 2 cut(s) 163, 239
Tsp45I GTSAC 2 cut(s) 505, 769
TspDTI ATGAA 3 cut(s) 180, 514, 679
TspGWI ACGGA 1 cut(s) 515
TspRI CASTG 1 cut(s) 61
VpaK11BI GGWCC 2 cut(s) 484, 654
XagI CCTNNNNNAGG 1 cut(s) 784
XapI RAATTY 1 cut(s) 210
XspI CTAG 2 cut(s) 285, 327
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.