AT3G11740

LURP-one-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0001888
Physical Location & Seq
Forward (+)
3712360 .. 3713537
1178 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G11740.1

Sequence Viewer

Length: 585 bp
ATGGCGATCGTTAGCCCTAATTTCTGTGCACCGTACCCTATCGAGTTGGGAATCGTACGGAAGGTGATGACTTTAACCGATGGTAACTTCGCCGTCACGGACGTTAACGGCAATCTCCTTTTCAAAGTCAAGGAACCTTTGTTTAGCATCAGCGACAAAAGGATTTTATTGGACGCATACGATACTCCAATCTTGACTTTGAGAGAAAATAAGGTGAGCTTGCATGATAGGTGGCTAGTATATAGAGGGAAGAGTACAGACCAAAGTGATCTATTATACACATTGAAACGATCTTCAATGATTCAAATAATGAAGCCAAAACTAGACATCTTTTTGGCTCATAATAAAGAAATGAAGATTTGCGACTTCCATGTTAAAGGAAGTTGGATCGACCGGTCTTGTGTCGTCTACGCCGGCAAATCTGATGCCATTGTTGCTCAGATGCACAAGAAACATACGGCACAAAGCATATTAATTGGGAAGAGTAATTTTTCGGTTACTGTCTATCCGAATGTTGACTTTGCTTTTATAGTTTCTCTCATTGTAATCCTCGATGACATTAACCGAGAAGATTCAGAAGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0019904 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOR

Protein Analysis

194

Amino Acids

22.01

Weight (kDa)

7.71

Isoelectric Point (pI)

36.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOR PF04525 16 - 185 2.4e-47 LURP-one-related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 408
AclWI GGATC 1 cut(s) 395
AfaI GTAC 3 cut(s) 35, 57, 256
AgeI ACCGGT 1 cut(s) 393
AgsI TTSAA 4 cut(s) 124, 286, 297, 305
AluBI AGCT 1 cut(s) 219
AluI AGCT 1 cut(s) 219
Alw21I GWGCWC 1 cut(s) 31
Alw44I GTGCAC 1 cut(s) 27
AlwI GGATC 1 cut(s) 395
ApaLI GTGCAC 1 cut(s) 27
AseI ATTAAT 1 cut(s) 473
AsiGI ACCGGT 1 cut(s) 393
AsuHPI GGTGA 2 cut(s) 76, 226
BaeGI GKGCMC 1 cut(s) 31
Bbv12I GWGCWC 1 cut(s) 31
BccI CCATC 1 cut(s) 74
BceAI ACGGC 3 cut(s) 77, 124, 474
BfaI CTAG 3 cut(s) 236, 323, 583
BmiI GGNNCC 1 cut(s) 135
BmsI GCATC 3 cut(s) 156, 415, 432
BsaWI WCCGGW 1 cut(s) 393
Bse118I RCCGGY 2 cut(s) 393, 413
BseMII CTCAG 1 cut(s) 452
BseSI GKGCMC 1 cut(s) 31
Bsh1285I CGRYCG 2 cut(s) 9, 394
BshTI ACCGGT 1 cut(s) 393
BsiEI CGRYCG 2 cut(s) 9, 394
BsiHKAI GWGCWC 1 cut(s) 31
BsiSI CCGG 2 cut(s) 394, 414
BsiWI CGTACG 1 cut(s) 55
Bsp1286I GDGCHC 1 cut(s) 31
Bsp143I GATC 4 cut(s) 6, 268, 290, 387
BspCNI CTCAG 1 cut(s) 451
BspLI GGNNCC 1 cut(s) 135
BspPI GGATC 1 cut(s) 395
BsrFI RCCGGY 2 cut(s) 393, 413
BssAI RCCGGY 2 cut(s) 393, 413
BssMI GATC 4 cut(s) 6, 268, 290, 387
Bst4CI ACNGT 2 cut(s) 33, 502
Bst6I CTCTTC 2 cut(s) 245, 476
BstC8I GCNNGC 2 cut(s) 221, 415
BstDEI CTNAG 1 cut(s) 438
BstKTI GATC 4 cut(s) 9, 271, 293, 390
BstMBI GATC 4 cut(s) 6, 268, 290, 387
BstMCI CGRYCG 2 cut(s) 9, 394
BstMWI GCNNNNNNNGC 1 cut(s) 434
BstSLI GKGCMC 1 cut(s) 31
Cac8I GCNNGC 2 cut(s) 221, 415
Cfr10I RCCGGY 2 cut(s) 393, 413
CseI GACGC 1 cut(s) 182
Csp6I GTAC 3 cut(s) 34, 56, 255
CspAI ACCGGT 1 cut(s) 393
CviAII CATG 2 cut(s) 224, 371
CviJI RGCY 5 cut(s) 15, 219, 235, 316, 338
CviKI_1 RGCY 5 cut(s) 15, 219, 235, 316, 338
CviQI GTAC 3 cut(s) 34, 56, 255
DdeI CTNAG 1 cut(s) 438
DpnI GATC 4 cut(s) 8, 270, 292, 389
DpnII GATC 4 cut(s) 6, 268, 290, 387
Eam1104I CTCTTC 2 cut(s) 245, 476
EarI CTCTTC 2 cut(s) 245, 476
FaeI CATG 2 cut(s) 227, 374
FalI AAGNNNNNCTT 2 cut(s) 203, 235
FatI CATG 2 cut(s) 223, 370
FblI GTMKAC 1 cut(s) 408
FspBI CTAG 3 cut(s) 236, 323, 583
HapII CCGG 2 cut(s) 394, 414
HgaI GACGC 1 cut(s) 182
Hin1II CATG 2 cut(s) 227, 374
HincII GTYRAC 2 cut(s) 106, 517
HindII GTYRAC 2 cut(s) 106, 517
HinfI GANTC 3 cut(s) 51, 301, 572
HpaI GTTAAC 1 cut(s) 106
HpaII CCGG 2 cut(s) 394, 414
HphI GGTGA 2 cut(s) 76, 226
Hpy166II GTNNAC 4 cut(s) 29, 106, 409, 517
Hpy188I TCNGA 4 cut(s) 424, 441, 510, 577
Hpy188III TCNNGA 1 cut(s) 193
Hpy8I GTNNAC 4 cut(s) 29, 106, 409, 517
HpyAV CCTTC 1 cut(s) 55
HpyCH4III ACNGT 2 cut(s) 33, 502
HpyCH4IV ACGT 1 cut(s) 102
HpyCH4V TGCA 3 cut(s) 29, 223, 445
HpyF10VI GCNNNNNNNGC 1 cut(s) 434
HpyF3I CTNAG 1 cut(s) 438
HpySE526I ACGT 1 cut(s) 102
Hsp92II CATG 2 cut(s) 227, 374
KroI GCCGGC 1 cut(s) 413
KroNI GCCGGC 1 cut(s) 415
KspAI GTTAAC 1 cut(s) 106
Kzo9I GATC 4 cut(s) 6, 268, 290, 387
LpnPI CCDG 2 cut(s) 407, 427
LweI GCATC 3 cut(s) 156, 415, 432
MaeI CTAG 3 cut(s) 236, 323, 583
MaeII ACGT 1 cut(s) 102
MaeIII GTNAC 3 cut(s) 83, 94, 496
MalI GATC 4 cut(s) 8, 270, 292, 389
MboI GATC 4 cut(s) 6, 268, 290, 387
MboII GAAGA 5 cut(s) 262, 285, 367, 493, 581
MhlI GDGCHC 1 cut(s) 31
MluCI AATT 3 cut(s) 19, 474, 487
MmeI TCCRAC 1 cut(s) 365
MnlI CCTC 2 cut(s) 239, 560
MroNI GCCGGC 1 cut(s) 413
MseI TTAA 5 cut(s) 74, 105, 375, 473, 561
MspI CCGG 2 cut(s) 394, 414
MwoI GCNNNNNNNGC 1 cut(s) 434
NaeI GCCGGC 1 cut(s) 415
NdeII GATC 4 cut(s) 6, 268, 290, 387
NgoMIV GCCGGC 1 cut(s) 413
NlaIII CATG 2 cut(s) 227, 374
NlaIV GGNNCC 1 cut(s) 135
NmuCI GTSAC 1 cut(s) 94
PdiI GCCGGC 1 cut(s) 415
PfeI GAWTC 3 cut(s) 51, 301, 572
Pfl23II CGTACG 1 cut(s) 55
PinAI ACCGGT 1 cut(s) 393
Ple19I CGATCG 1 cut(s) 9
PshBI ATTAAT 1 cut(s) 473
PspLI CGTACG 1 cut(s) 55
PspN4I GGNNCC 1 cut(s) 135
PvuI CGATCG 1 cut(s) 9
RsaI GTAC 3 cut(s) 35, 57, 256
RsaNI GTAC 3 cut(s) 34, 56, 255
SaqAI TTAA 5 cut(s) 74, 105, 375, 473, 561
Sau3AI GATC 4 cut(s) 6, 268, 290, 387
SduI GDGCHC 1 cut(s) 31
SetI ASST 6 cut(s) 66, 105, 139, 216, 221, 233
SfaNI GCATC 3 cut(s) 156, 415, 432
Sse9I AATT 3 cut(s) 19, 474, 487
SspMI CTAG 3 cut(s) 236, 323, 583
TaaI ACNGT 2 cut(s) 33, 502
TaiI ACGT 1 cut(s) 105
TaqI TCGA 3 cut(s) 42, 390, 552
TasI AATT 3 cut(s) 19, 474, 487
TatI WGTACW 1 cut(s) 254
TfiI GAWTC 3 cut(s) 51, 301, 572
Tru1I TTAA 5 cut(s) 74, 105, 375, 473, 561
Tru9I TTAA 5 cut(s) 74, 105, 375, 473, 561
TseFI GTSAC 1 cut(s) 94
Tsp45I GTSAC 1 cut(s) 94
TspDTI ATGAA 2 cut(s) 326, 368
TspGWI ACGGA 2 cut(s) 73, 113
VneI GTGCAC 1 cut(s) 27
VspI ATTAAT 1 cut(s) 473
XmiI GTMKAC 1 cut(s) 408
XspI CTAG 3 cut(s) 236, 323, 583
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.