Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0001888

Physical Location & Seq

Genomic Coordinates Reverse (-)

40374733 .. 40375520

Gene Structure 788 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00418810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGGCACAAGCAATCATCAGCCCTCACTTCTGCAGTCCGTACCCTGTTGATCTTGGAATCGTCAGACAAGTTCTGTCCGGCAACTTTTCAGTCAAGGATGTTAATGGCAATACTGTTTTCAAAGTCAAAGGAGCATTTTTGAGCTTGCGCGAACGCCGAGTCTTAGTTGATGGTGCTGGAAATCCCATTGTCACTCTTCAGAAGAAGTTGCTGAGTACACATCATAGATGGGAAGTTTATAGGGGTGATAGCACGGATTCGAGGAATCTGGTCTTTAGTGTTAAGAAATCTTCGGTGGTTCAGTTGAAGACGAAATTGCACGTTTTCTTGGCAAATAATAAAGGAGAGTATGCCCCTGACTTCAAGGTGAAGGGAAGTTGGTTTGAACAATCTTGTGTTGTATATTCTGGGAAATCCAAGTCCTCCAACATTTTTGCTGAAATGCACAAGAAGCACACAGTTACAAGCGTGTTGTTTGGGAAGGACAATTTCATGGTCACAGTGTATCCAGGTGTTGACCAAGCACTCATTGTCGCGCTTATTTTCATCCTTAATGAGATAAACTTCAGTGGTTCTGGTTCTAATTCTGGTTCCGGCGGAGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009725 GO:0009751 GO:0010033 GO:0014070 GO:0042221 GO:0042493 GO:0043207 GO:0046677 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0098542 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOR

Protein Analysis

201

Amino Acids

22.07

Weight (kDa)

9.61

Isoelectric Point (pI)

26.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LOR	PF04525	25 - 184	7.4e-49	LURP-one-related

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001888)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33840 AT1G33840 AT2G14560 AT2G14560 AT2G14560 AT2G14560 AT3G11740 AT5G01750 AT5G01750
fragaria_vesca	FvH4_6g10350 FvH4_6g10360 FvH4_6g10360
malus_domestica	MD04G1169400.v1.1 MD12G1182900.v1.1
prunus_persica	Prupe.6G287400_v2.0.a1 Prupe.6G287500_v2.0.a1 Prupe.6G287900_v2.0.a1
pyrus_communis	pycom04g15000 pycom12g17170
rosa_chinensis	RchiOBHm_Chr3g0461171 RchiOBHm_Chr3g0461181 RchiOBHm_Chr3g0461261
rosa_laevigata	RLG00000024947 RLG00000024948
rosa_multiflora	Rmu_sc0009344.1_g000007 Rmu_sc0009344.1_g000008
rosa_roxburghii	Rroxscaffold_6G00418740 Rroxscaffold_6G00418760 Rroxscaffold_6G00418810 Rroxscaffold_6G00418820
rosa_rugosa	Rorug03G0048800 Rorug03G0048800 Rorug03G0048900 Rorug03G0049300
rosa_samantha	Rh3AG106000 Rh3AG106100 Rh3BG110300 Rh3BG110400 Rh3BG110800 Rh3CG111900 Rh3CG112000 Rh3DG112100 Rh3DG112200 Rh3DG112600
rosa_wichuraiana	Rw3G009090 Rw3G009130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	150, 536
AciI	CCGC	1 cut(s)	597
AcuI	CTGAAG	2 cut(s)	182, 550
AfaI	GTAC	2 cut(s)	41, 217
AgsI	TTSAA	4 cut(s)	121, 307, 364, 386
AjnI	CCWGG	1 cut(s)	508
AluBI	AGCT	1 cut(s)	144
AluI	AGCT	1 cut(s)	144
Alw26I	GTCTC	1 cut(s)	594
ArsI	GACNNNNNNTTYG	2 cut(s)	144, 176
AspLEI	GCGC	2 cut(s)	150, 538
AsuHPI	GGTGA	2 cut(s)	257, 379
BbsI	GAAGAC	1 cut(s)	314
BccI	CCATC	2 cut(s)	164, 222
BciT130I	CCWGG	1 cut(s)	510
BciVI	GTATCC	1 cut(s)	516
BcoDI	GTCTC	1 cut(s)	594
BfmI	CTRYAG	1 cut(s)	31
BfuI	GTATCC	1 cut(s)	516
Bme1390I	CCNGG	1 cut(s)	510
BmiI	GGNNCC	1 cut(s)	592
BmrFI	CCNGG	1 cut(s)	510
BpiI	GAAGAC	1 cut(s)	314
BseBI	CCWGG	1 cut(s)	510
BseGI	GGATG	2 cut(s)	103, 546
BseMII	CTCAG	1 cut(s)	203
Bsh1236I	CGCG	2 cut(s)	150, 536
BsiSI	CCGG	2 cut(s)	78, 594
BsmAI	GTCTC	1 cut(s)	594
Bsp143I	GATC	1 cut(s)	49
BspACI	CCGC	1 cut(s)	597
BspCNI	CTCAG	1 cut(s)	204
BspFNI	CGCG	2 cut(s)	150, 536
BspLI	GGNNCC	1 cut(s)	592
BspMAI	CTGCAG	1 cut(s)	35
BssMI	GATC	1 cut(s)	49
Bst2UI	CCWGG	1 cut(s)	510
Bst4CI	ACNGT	3 cut(s)	115, 460, 502
Bst6I	CTCTTC	1 cut(s)	201
BstC8I	GCNNGC	1 cut(s)	146
BstDEI	CTNAG	2 cut(s)	163, 212
BstF5I	GGATG	2 cut(s)	103, 546
BstFNI	CGCG	2 cut(s)	150, 536
BstHHI	GCGC	2 cut(s)	150, 538
BstKTI	GATC	1 cut(s)	52
BstMAI	GTCTC	1 cut(s)	594
BstMBI	GATC	1 cut(s)	49
BstMWI	GCNNNNNNNGC	1 cut(s)	451
BstNI	CCWGG	1 cut(s)	510
BstSCI	CCNGG	1 cut(s)	508
BstSFI	CTRYAG	1 cut(s)	31
BstUI	CGCG	2 cut(s)	150, 536
BstV2I	GAAGAC	1 cut(s)	314
BsuI	GTATCC	1 cut(s)	516
BtsCI	GGATG	2 cut(s)	103, 546
BtsIMutI	CAGTG	2 cut(s)	507, 574
Cac8I	GCNNGC	1 cut(s)	146
CfoI	GCGC	2 cut(s)	150, 538
Csp6I	GTAC	2 cut(s)	40, 216
CviAII	CATG	1 cut(s)	493
CviJI	RGCY	2 cut(s)	21, 144
CviKI_1	RGCY	2 cut(s)	21, 144
CviQI	GTAC	2 cut(s)	40, 216
DdeI	CTNAG	2 cut(s)	163, 212
DpnI	GATC	1 cut(s)	51
DpnII	GATC	1 cut(s)	49
Eam1104I	CTCTTC	1 cut(s)	201
EarI	CTCTTC	1 cut(s)	201
Eco57I	CTGAAG	2 cut(s)	182, 550
EcoRII	CCWGG	1 cut(s)	508
FaeI	CATG	1 cut(s)	496
FaiI	YATR	5 cut(s)	225, 240, 351, 403, 494
FatI	CATG	1 cut(s)	492
FokI	GGATG	2 cut(s)	110, 533
GlaI	GCGC	2 cut(s)	149, 537
HapII	CCGG	2 cut(s)	78, 594
HhaI	GCGC	2 cut(s)	150, 538
Hin1II	CATG	1 cut(s)	496
Hin6I	GCGC	2 cut(s)	148, 536
HinP1I	GCGC	2 cut(s)	148, 536
HincII	GTYRAC	1 cut(s)	517
HindII	GTYRAC	1 cut(s)	517
HinfI	GANTC	4 cut(s)	57, 159, 257, 265
HpaII	CCGG	2 cut(s)	78, 594
HphI	GGTGA	2 cut(s)	257, 379
Hpy166II	GTNNAC	2 cut(s)	218, 517
Hpy188I	TCNGA	2 cut(s)	65, 201
Hpy8I	GTNNAC	2 cut(s)	218, 517
HpyAV	CCTTC	2 cut(s)	364, 475
HpyCH4III	ACNGT	3 cut(s)	115, 460, 502
HpyCH4IV	ACGT	1 cut(s)	321
HpyCH4V	TGCA	3 cut(s)	33, 319, 445
HpyF10VI	GCNNNNNNNGC	1 cut(s)	451
HpyF3I	CTNAG	2 cut(s)	163, 212
HpySE526I	ACGT	1 cut(s)	321
Hsp92II	CATG	1 cut(s)	496
HspAI	GCGC	2 cut(s)	148, 536
Kzo9I	GATC	1 cut(s)	49
LmnI	GCTCC	1 cut(s)	131
MaeII	ACGT	1 cut(s)	321
MaeIII	GTNAC	3 cut(s)	190, 460, 496
MalI	GATC	1 cut(s)	51
MboI	GATC	1 cut(s)	49
MboII	GAAGA	4 cut(s)	188, 214, 282, 319
MluCI	AATT	3 cut(s)	314, 487, 583
MlyI	GAGTC	1 cut(s)	168
MmeI	TCCRAC	1 cut(s)	450
MnlI	CCTC	3 cut(s)	33, 255, 433
MseI	TTAA	3 cut(s)	102, 282, 552
MspI	CCGG	2 cut(s)	78, 594
MspR9I	CCNGG	1 cut(s)	510
MvaI	CCWGG	1 cut(s)	510
MvnI	CGCG	2 cut(s)	150, 536
MwoI	GCNNNNNNNGC	1 cut(s)	451
NdeII	GATC	1 cut(s)	49
NlaIII	CATG	1 cut(s)	496
NlaIV	GGNNCC	1 cut(s)	592
NmeAIII	GCCGAG	1 cut(s)	182
NmuCI	GTSAC	2 cut(s)	190, 496
PfeI	GAWTC	3 cut(s)	57, 257, 265
PleI	GAGTC	1 cut(s)	167
PpsI	GAGTC	1 cut(s)	167
Psp6I	CCWGG	1 cut(s)	508
PspGI	CCWGG	1 cut(s)	508
PspN4I	GGNNCC	1 cut(s)	592
PstI	CTGCAG	1 cut(s)	35
RsaI	GTAC	2 cut(s)	41, 217
RsaNI	GTAC	2 cut(s)	40, 216
SaqAI	TTAA	3 cut(s)	102, 282, 552
Sau3AI	GATC	1 cut(s)	49
SchI	GAGTC	1 cut(s)	168
ScrFI	CCNGG	1 cut(s)	510
SetI	ASST	4 cut(s)	146, 324, 369, 514
SfcI	CTRYAG	1 cut(s)	31
Sse9I	AATT	3 cut(s)	314, 487, 583
SsiI	CCGC	1 cut(s)	597
StyD4I	CCNGG	1 cut(s)	508
TaaI	ACNGT	3 cut(s)	115, 460, 502
TaiI	ACGT	1 cut(s)	324
TaqI	TCGA	1 cut(s)	260
TasI	AATT	3 cut(s)	314, 487, 583
TatI	WGTACW	1 cut(s)	215
TfiI	GAWTC	3 cut(s)	57, 257, 265
Tru1I	TTAA	3 cut(s)	102, 282, 552
Tru9I	TTAA	3 cut(s)	102, 282, 552
TscAI	CASTG	2 cut(s)	507, 574
TseFI	GTSAC	2 cut(s)	190, 496
Tsp45I	GTSAC	2 cut(s)	190, 496
TspDTI	ATGAA	2 cut(s)	481, 535
TspGWI	ACGGA	2 cut(s)	27, 269
TspRI	CASTG	2 cut(s)	507, 574

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.