Rh3BG110400

LURP-one-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0001888
Physical Location & Seq
Forward (+)
8992842 .. 8993622
781 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG110400.1

Sequence Viewer

Length: 606 bp
ATGGCACAAGCAATCATCAGCCCTCACTTCTGCAGTCCGTACCCTGTTGATCTTGGAATCGTCAGACAAGTTCTGTCCGGCAACTTTTCAGTCAAGGATGTTAATGGCAATACTGTTTTCAAAGTGAAAGGAGCATTTTTGAGCTTGCGTGAACGCCGAGTCTTAGTTGATGGTGCTGGGAATCCCATTGTCACTCTTCAAAAGAAGTTGTTGAGTACACATCATAGATGGGAAGTTTATAGGGGTGATAGCACGGATTCGGGGAATCTGGTCTTTAGTGTTAAGAAATCTTCGGTGGTTCAGTTGAAGACGAAATTGCACGTTTTCTTGGCAAATAATAAAGGAGAGTATGCTCCTGACTTCAAGGTGAAGGGAAGTTGGTTTGAACAATCTTGTGTTGTATATTCTGGGAAATCCAAGTCCTCCAACATTTTGGCTGAAATGCACAAGAAGCACACAGTTACAAGCGTGTTGTTTGGGAAGGACAATTTCATGGTCACAGTGTATCCAGGTGTTGACCAAGCACTCATTGTCGCGCTTATTTTCATTCTTAATGAGATGAACTTCAGTGGTTCTGGTTCTAATTCTGGTTCCGGCGGAGACTAA

Protein Analysis

201

Amino Acids

21.96

Weight (kDa)

9.52

Isoelectric Point (pI)

24.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOR PF04525 25 - 184 2.8e-49 LURP-one-related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 536
AciI CCGC 1 cut(s) 597
AcuI CTGAAG 1 cut(s) 550
AfaI GTAC 2 cut(s) 41, 217
AgsI TTSAA 5 cut(s) 121, 200, 307, 364, 386
AjnI CCWGG 1 cut(s) 508
AluBI AGCT 1 cut(s) 144
AluI AGCT 1 cut(s) 144
Alw26I GTCTC 1 cut(s) 594
AspLEI GCGC 1 cut(s) 538
AsuHPI GGTGA 2 cut(s) 257, 379
BbsI GAAGAC 1 cut(s) 314
BccI CCATC 2 cut(s) 164, 222
BciT130I CCWGG 1 cut(s) 510
BciVI GTATCC 1 cut(s) 516
BcoDI GTCTC 1 cut(s) 594
BfmI CTRYAG 1 cut(s) 31
BfuI GTATCC 1 cut(s) 516
Bme1390I CCNGG 1 cut(s) 510
BmiI GGNNCC 1 cut(s) 592
BmrFI CCNGG 1 cut(s) 510
BpiI GAAGAC 1 cut(s) 314
BseBI CCWGG 1 cut(s) 510
BseGI GGATG 1 cut(s) 103
BseYI CCCAGC 1 cut(s) 176
Bsh1236I CGCG 1 cut(s) 536
BsiSI CCGG 2 cut(s) 78, 594
BsmAI GTCTC 1 cut(s) 594
Bsp143I GATC 1 cut(s) 49
BspACI CCGC 1 cut(s) 597
BspFNI CGCG 1 cut(s) 536
BspLI GGNNCC 1 cut(s) 592
BspMAI CTGCAG 1 cut(s) 35
BssMI GATC 1 cut(s) 49
Bst2UI CCWGG 1 cut(s) 510
Bst4CI ACNGT 3 cut(s) 115, 460, 502
Bst6I CTCTTC 1 cut(s) 201
BstC8I GCNNGC 1 cut(s) 146
BstDEI CTNAG 1 cut(s) 163
BstF5I GGATG 1 cut(s) 103
BstFNI CGCG 1 cut(s) 536
BstHHI GCGC 1 cut(s) 538
BstKTI GATC 1 cut(s) 52
BstMAI GTCTC 1 cut(s) 594
BstMBI GATC 1 cut(s) 49
BstMWI GCNNNNNNNGC 1 cut(s) 451
BstNI CCWGG 1 cut(s) 510
BstSCI CCNGG 1 cut(s) 508
BstSFI CTRYAG 1 cut(s) 31
BstUI CGCG 1 cut(s) 536
BstV2I GAAGAC 1 cut(s) 314
BstXI CCANNNNNNTGG 1 cut(s) 433
BsuI GTATCC 1 cut(s) 516
BtsCI GGATG 1 cut(s) 103
BtsIMutI CAGTG 2 cut(s) 507, 574
Cac8I GCNNGC 1 cut(s) 146
CfoI GCGC 1 cut(s) 538
Csp6I GTAC 2 cut(s) 40, 216
CviAII CATG 1 cut(s) 493
CviJI RGCY 3 cut(s) 21, 144, 437
CviKI_1 RGCY 3 cut(s) 21, 144, 437
CviQI GTAC 2 cut(s) 40, 216
DdeI CTNAG 1 cut(s) 163
DpnI GATC 1 cut(s) 51
DpnII GATC 1 cut(s) 49
Eam1104I CTCTTC 1 cut(s) 201
EarI CTCTTC 1 cut(s) 201
Eco57I CTGAAG 1 cut(s) 550
EcoRII CCWGG 1 cut(s) 508
FaeI CATG 1 cut(s) 496
FaiI YATR 5 cut(s) 225, 240, 351, 403, 494
FatI CATG 1 cut(s) 492
FokI GGATG 1 cut(s) 110
GlaI GCGC 1 cut(s) 537
GsaI CCCAGC 1 cut(s) 180
HapII CCGG 2 cut(s) 78, 594
HhaI GCGC 1 cut(s) 538
Hin1II CATG 1 cut(s) 496
Hin6I GCGC 1 cut(s) 536
HinP1I GCGC 1 cut(s) 536
HincII GTYRAC 1 cut(s) 517
HindII GTYRAC 1 cut(s) 517
HinfI GANTC 5 cut(s) 57, 159, 181, 257, 265
HpaII CCGG 2 cut(s) 78, 594
HphI GGTGA 2 cut(s) 257, 379
Hpy166II GTNNAC 3 cut(s) 152, 218, 517
Hpy188I TCNGA 1 cut(s) 65
Hpy188III TCNNGA 1 cut(s) 356
Hpy8I GTNNAC 3 cut(s) 152, 218, 517
HpyAV CCTTC 2 cut(s) 364, 475
HpyCH4III ACNGT 3 cut(s) 115, 460, 502
HpyCH4IV ACGT 1 cut(s) 321
HpyCH4V TGCA 3 cut(s) 33, 319, 445
HpyF10VI GCNNNNNNNGC 1 cut(s) 451
HpyF3I CTNAG 1 cut(s) 163
HpySE526I ACGT 1 cut(s) 321
Hsp92II CATG 1 cut(s) 496
HspAI GCGC 1 cut(s) 536
Kzo9I GATC 1 cut(s) 49
LmnI GCTCC 2 cut(s) 131, 358
MaeII ACGT 1 cut(s) 321
MaeIII GTNAC 3 cut(s) 190, 460, 496
MalI GATC 1 cut(s) 51
MboI GATC 1 cut(s) 49
MboII GAAGA 3 cut(s) 188, 282, 319
MluCI AATT 3 cut(s) 314, 487, 583
MlyI GAGTC 1 cut(s) 168
MmeI TCCRAC 1 cut(s) 450
MnlI CCTC 2 cut(s) 33, 433
MseI TTAA 3 cut(s) 102, 282, 552
MspI CCGG 2 cut(s) 78, 594
MspR9I CCNGG 1 cut(s) 510
MvaI CCWGG 1 cut(s) 510
MvnI CGCG 1 cut(s) 536
MwoI GCNNNNNNNGC 1 cut(s) 451
NdeII GATC 1 cut(s) 49
NlaIII CATG 1 cut(s) 496
NlaIV GGNNCC 1 cut(s) 592
NmeAIII GCCGAG 1 cut(s) 182
NmuCI GTSAC 2 cut(s) 190, 496
PfeI GAWTC 4 cut(s) 57, 181, 257, 265
PleI GAGTC 1 cut(s) 167
PpsI GAGTC 1 cut(s) 167
Psp6I CCWGG 1 cut(s) 508
PspFI CCCAGC 1 cut(s) 176
PspGI CCWGG 1 cut(s) 508
PspN4I GGNNCC 1 cut(s) 592
PstI CTGCAG 1 cut(s) 35
RsaI GTAC 2 cut(s) 41, 217
RsaNI GTAC 2 cut(s) 40, 216
SaqAI TTAA 3 cut(s) 102, 282, 552
Sau3AI GATC 1 cut(s) 49
SchI GAGTC 1 cut(s) 168
ScrFI CCNGG 1 cut(s) 510
SetI ASST 4 cut(s) 146, 324, 369, 514
SfcI CTRYAG 1 cut(s) 31
Sse9I AATT 3 cut(s) 314, 487, 583
SsiI CCGC 1 cut(s) 597
StyD4I CCNGG 1 cut(s) 508
TaaI ACNGT 3 cut(s) 115, 460, 502
TaiI ACGT 1 cut(s) 324
TasI AATT 3 cut(s) 314, 487, 583
TatI WGTACW 1 cut(s) 215
TfiI GAWTC 4 cut(s) 57, 181, 257, 265
Tru1I TTAA 3 cut(s) 102, 282, 552
Tru9I TTAA 3 cut(s) 102, 282, 552
TscAI CASTG 2 cut(s) 507, 574
TseFI GTSAC 2 cut(s) 190, 496
Tsp45I GTSAC 2 cut(s) 190, 496
TspDTI ATGAA 3 cut(s) 481, 535, 575
TspGWI ACGGA 2 cut(s) 27, 269
TspRI CASTG 2 cut(s) 507, 574
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.