Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001888

Physical Location & Seq

Genomic Coordinates Reverse (-)

9329631 .. 9330549

Gene Structure 919 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ42769

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGATATTAATACCAAATACTCCATCACCATCTCCCATCATCAGCCCTAAGTACTGTAATTTCTACCCCATCAGTATTTCAATTGTCAGAGAAGTTAAGACCTTAGCTACTGATGATGATGTTAGCATCCTCGTAGTAAAAAATGCTGACGGCAATACCATTGTCGGAGCGAAGCAGAAATTTTATTGGTTTCGTCATGACCGACTAGTTTTGTACAACGCCGCTGGAAAACCCTTCGACTTCCATTTAGATACCAAGTTGAAAGTGTTCTTAGCAAAGAACAAAACAAAGAATGCACCTGACTTTAAGCTCAAAGGAAATTGGTTCGAACGATCTTGCGCTGTATATGCTAAGAACTCCTCCACCATCGTTGCTGAAATGAATAAGAAGTGCACAGTTGATAGCGTGCTGTTTAAGAAGGACAATTTCATGGTAACTGTGTATCCTGGCATGGATTACGCATTCATTGTGGCGCTTTTTGTCATTCTTGATGTAGGTTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009725 GO:0009751 GO:0010033 GO:0014070 GO:0042221 GO:0042493 GO:0043207 GO:0046677 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0098542 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOR

Protein Analysis

167

Amino Acids

18.89

Weight (kDa)

9.28

Isoelectric Point (pI)

28.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LOR	PF04525	83 - 164	2.3e-22	LURP-one-related

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001888)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33840 AT1G33840 AT2G14560 AT2G14560 AT2G14560 AT2G14560 AT3G11740 AT5G01750 AT5G01750
fragaria_vesca	FvH4_6g10350 FvH4_6g10360 FvH4_6g10360
malus_domestica	MD04G1169400.v1.1 MD12G1182900.v1.1
prunus_persica	Prupe.6G287400_v2.0.a1 Prupe.6G287500_v2.0.a1 Prupe.6G287900_v2.0.a1
pyrus_communis	pycom04g15000 pycom12g17170
rosa_chinensis	RchiOBHm_Chr3g0461171 RchiOBHm_Chr3g0461181 RchiOBHm_Chr3g0461261
rosa_laevigata	RLG00000024947 RLG00000024948
rosa_multiflora	Rmu_sc0009344.1_g000007 Rmu_sc0009344.1_g000008
rosa_roxburghii	Rroxscaffold_6G00418740 Rroxscaffold_6G00418760 Rroxscaffold_6G00418810 Rroxscaffold_6G00418820
rosa_rugosa	Rorug03G0048800 Rorug03G0048800 Rorug03G0048900 Rorug03G0049300
rosa_samantha	Rh3AG106000 Rh3AG106100 Rh3BG110300 Rh3BG110400 Rh3BG110800 Rh3CG111900 Rh3CG112000 Rh3DG112100 Rh3DG112200 Rh3DG112600
rosa_wichuraiana	Rw3G009090 Rw3G009130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	222
AcsI	RAATTY	1 cut(s)	179
AfaI	GTAC	2 cut(s)	53, 215
AgsI	TTSAA	2 cut(s)	81, 262
AhlI	ACTAGT	1 cut(s)	205
AjnI	CCWGG	1 cut(s)	445
AluBI	AGCT	2 cut(s)	107, 310
AluI	AGCT	2 cut(s)	107, 310
Alw21I	GWGCWC	1 cut(s)	395
Alw44I	GTGCAC	1 cut(s)	391
ApaLI	GTGCAC	1 cut(s)	391
ApoI	RAATTY	1 cut(s)	179
AseI	ATTAAT	1 cut(s)	8
Asp700I	GAANNNNTTC	1 cut(s)	266
AspLEI	GCGC	2 cut(s)	341, 475
AsuHPI	GGTGA	1 cut(s)	18
AsuII	TTCGAA	1 cut(s)	327
BaeGI	GKGCMC	1 cut(s)	395
Bbv12I	GWGCWC	1 cut(s)	395
BccI	CCATC	5 cut(s)	31, 37, 44, 77, 374
BceAI	ACGGC	1 cut(s)	166
BciT130I	CCWGG	1 cut(s)	447
BciVI	GTATCC	1 cut(s)	453
BcuI	ACTAGT	1 cut(s)	205
BfaI	CTAG	1 cut(s)	206
BfoI	RGCGCY	1 cut(s)	476
BfuI	GTATCC	1 cut(s)	453
BisI	GCNGC	1 cut(s)	222
BlsI	GCNGC	1 cut(s)	223
BmcAI	AGTACT	1 cut(s)	53
Bme1390I	CCNGG	1 cut(s)	447
BmrFI	CCNGG	1 cut(s)	447
BmsI	GCATC	1 cut(s)	135
Bpu10I	CCTNAGC	1 cut(s)	103
Bpu14I	TTCGAA	1 cut(s)	327
BseBI	CCWGG	1 cut(s)	447
BseGI	GGATG	1 cut(s)	126
BseRI	GAGGAG	1 cut(s)	349
BseSI	GKGCMC	1 cut(s)	395
BsiHKAI	GWGCWC	1 cut(s)	395
BsmI	GAATGC	2 cut(s)	298, 461
Bsp119I	TTCGAA	1 cut(s)	327
Bsp1286I	GDGCHC	1 cut(s)	395
Bsp1407I	TGTACA	1 cut(s)	213
Bsp143I	GATC	1 cut(s)	332
BspACI	CCGC	1 cut(s)	222
BspHI	TCATGA	1 cut(s)	196
BspT104I	TTCGAA	1 cut(s)	327
BsrGI	TGTACA	1 cut(s)	213
BssMI	GATC	1 cut(s)	332
Bst2UI	CCWGG	1 cut(s)	447
Bst4CI	ACNGT	3 cut(s)	56, 397, 439
BstAUI	TGTACA	1 cut(s)	213
BstBI	TTCGAA	1 cut(s)	327
BstC8I	GCNNGC	1 cut(s)	407
BstDEI	CTNAG	4 cut(s)	48, 103, 271, 351
BstF5I	GGATG	1 cut(s)	126
BstH2I	RGCGCY	1 cut(s)	476
BstHHI	GCGC	2 cut(s)	341, 475
BstKTI	GATC	1 cut(s)	335
BstMBI	GATC	1 cut(s)	332
BstMWI	GCNNNNNNNGC	1 cut(s)	347
BstNI	CCWGG	1 cut(s)	447
BstSCI	CCNGG	1 cut(s)	445
BstSLI	GKGCMC	1 cut(s)	395
BsuI	GTATCC	1 cut(s)	453
BtsCI	GGATG	1 cut(s)	126
Cac8I	GCNNGC	1 cut(s)	407
CciI	TCATGA	1 cut(s)	196
CfoI	GCGC	2 cut(s)	341, 475
Csp6I	GTAC	2 cut(s)	52, 214
CspCI	CAANNNNNGTGG	2 cut(s)	352, 387
CviAII	CATG	3 cut(s)	197, 430, 451
CviJI	RGCY	3 cut(s)	45, 107, 310
CviKI_1	RGCY	3 cut(s)	45, 107, 310
CviQI	GTAC	2 cut(s)	52, 214
DdeI	CTNAG	4 cut(s)	48, 103, 271, 351
DpnI	GATC	1 cut(s)	334
DpnII	GATC	1 cut(s)	332
EcoRII	CCWGG	1 cut(s)	445
FaeI	CATG	3 cut(s)	200, 433, 454
FaiI	YATR	5 cut(s)	198, 346, 348, 431, 452
FatI	CATG	3 cut(s)	196, 429, 450
Fnu4HI	GCNGC	1 cut(s)	222
FokI	GGATG	1 cut(s)	113
Fsp4HI	GCNGC	1 cut(s)	222
FspBI	CTAG	1 cut(s)	206
GlaI	GCGC	2 cut(s)	340, 474
GluI	GCNGC	1 cut(s)	222
HaeII	RGCGCY	1 cut(s)	476
HhaI	GCGC	2 cut(s)	341, 475
Hin1II	CATG	3 cut(s)	200, 433, 454
Hin6I	GCGC	2 cut(s)	339, 473
HinP1I	GCGC	2 cut(s)	339, 473
HphI	GGTGA	1 cut(s)	18
Hpy166II	GTNNAC	1 cut(s)	393
Hpy188I	TCNGA	2 cut(s)	89, 167
Hpy188III	TCNNGA	2 cut(s)	197, 488
Hpy8I	GTNNAC	1 cut(s)	393
HpyAV	CCTTC	2 cut(s)	244, 412
HpyCH4III	ACNGT	3 cut(s)	56, 397, 439
HpyCH4V	TGCA	2 cut(s)	296, 393
HpyF10VI	GCNNNNNNNGC	1 cut(s)	347
HpyF3I	CTNAG	4 cut(s)	48, 103, 271, 351
Hsp92II	CATG	3 cut(s)	200, 433, 454
HspAI	GCGC	2 cut(s)	339, 473
Kzo9I	GATC	1 cut(s)	332
LmnI	GCTCC	1 cut(s)	167
LpnPI	CCDG	4 cut(s)	210, 312, 432, 459
LweI	GCATC	1 cut(s)	135
MaeI	CTAG	1 cut(s)	206
MaeIII	GTNAC	1 cut(s)	433
MalI	GATC	1 cut(s)	334
MboI	GATC	1 cut(s)	332
MfeI	CAATTG	1 cut(s)	81
MhlI	GDGCHC	1 cut(s)	395
MluCI	AATT	5 cut(s)	58, 81, 179, 319, 424
MmeI	TCCRAC	1 cut(s)	145
MnlI	CCTC	2 cut(s)	140, 370
MroXI	GAANNNNTTC	1 cut(s)	266
MseI	TTAA	4 cut(s)	8, 96, 306, 414
MspA1I	CMGCKG	1 cut(s)	224
MspR9I	CCNGG	1 cut(s)	447
MunI	CAATTG	1 cut(s)	81
Mva1269I	GAATGC	2 cut(s)	298, 461
MvaI	CCWGG	1 cut(s)	447
MwoI	GCNNNNNNNGC	1 cut(s)	347
NdeII	GATC	1 cut(s)	332
NlaIII	CATG	3 cut(s)	200, 433, 454
NspV	TTCGAA	1 cut(s)	327
PagI	TCATGA	1 cut(s)	196
PcsI	WCGNNNNNNNCGW	1 cut(s)	199
PctI	GAATGC	2 cut(s)	298, 461
PdmI	GAANNNNTTC	1 cut(s)	266
PkrI	GCNGC	1 cut(s)	223
PshBI	ATTAAT	1 cut(s)	8
Psp6I	CCWGG	1 cut(s)	445
PspGI	CCWGG	1 cut(s)	445
RsaI	GTAC	2 cut(s)	53, 215
RsaNI	GTAC	2 cut(s)	52, 214
SaqAI	TTAA	4 cut(s)	8, 96, 306, 414
SatI	GCNGC	1 cut(s)	222
Sau3AI	GATC	1 cut(s)	332
ScaI	AGTACT	1 cut(s)	53
ScrFI	CCNGG	1 cut(s)	447
SduI	GDGCHC	1 cut(s)	395
SetI	ASST	5 cut(s)	104, 109, 301, 312, 499
SfaNI	GCATC	1 cut(s)	135
SfuI	TTCGAA	1 cut(s)	327
SpeI	ACTAGT	1 cut(s)	205
Sse9I	AATT	5 cut(s)	58, 81, 179, 319, 424
SsiI	CCGC	1 cut(s)	222
SspMI	CTAG	1 cut(s)	206
StyD4I	CCNGG	1 cut(s)	445
TaaI	ACNGT	3 cut(s)	56, 397, 439
TaqI	TCGA	2 cut(s)	237, 327
TaqII	GACCGA	1 cut(s)	216
TasI	AATT	5 cut(s)	58, 81, 179, 319, 424
TatI	WGTACW	2 cut(s)	51, 213
TauI	GCSGC	1 cut(s)	224
Tru1I	TTAA	4 cut(s)	8, 96, 306, 414
Tru9I	TTAA	4 cut(s)	8, 96, 306, 414
TspDTI	ATGAA	3 cut(s)	395, 418, 454
VneI	GTGCAC	1 cut(s)	391
VspI	ATTAAT	1 cut(s)	8
XapI	RAATTY	1 cut(s)	179
XmnI	GAANNNNTTC	1 cut(s)	266
XspI	CTAG	1 cut(s)	206
ZrmI	AGTACT	1 cut(s)	53

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.