Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002133

Physical Location & Seq

Genomic Coordinates Reverse (-)

17884645 .. 17885614

Gene Structure 970 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G48405.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGGATGCCTCTCAGTCTCCTCTTCCACAGTTGCCATCTCTCTCCGATCTTGAGTCTCGGATGCAAGTAATGCGGGTCTCTGCTCTTGATGATAACCAAACCGGTGAAACATTTTCTCAACGTGCTGAATGGTTTTACCAGAGAAGCCCTCTCCTTCTCTCACTCTGTCAAGATCTCTACGATGGTTACGCCACTCTCTTGGACCGTTTCAATCAAAACCCTAAACAAGTCATTCCTCATGACAATGATACCGATACTGACATCACTTCTGAAGTAGAGAGCATCTTGTCCTTTCAACAGATGGAAGTCTCCACTTGTGATATGCAAAAGAACATTGAAGACTTAGTCTCGCAGCTCGTTACTGCAAACTTGGAGAAAGATACCGCGAAGCACATATTACAACGCAGAGAACAAACGTTGCAAGAAGCTTGCAAGACAATTGGCTTGCTAAAGAAGCTTGTGATGTTGCTTGATATGGAGAAGGAAGTAGCTGTAGAAGAAACCGCAAATCTCGGACACAAACTTACTTCCCTCTTGGAAGAGAACCGAGAGCTCGCCAGTGAAGCGCTGTTCATGAAAAACGAAGCAGTTAAGCTTGCTAGGTGCGTTCTTAAGATGAGGGATGAACATTTTCACAAGATGTGTCATCTCCAGAACCAAATCTACGAGCTGCAGTCATCGAGAGAGCCTGTCTACGAAAATGAATCCTCGCAGAGCTGCTTTGGATTGGAAAATAGTAAGAAAAAGAGCAAGAAGAGAAAGATGAGTGAAACAAGAAGTGAAACTGGAGAGAAAATGAGATCCAAGTGGTTCAAGAGACTCAATACCATCAATCCCTTTACCAAATGTAGCATTACGCCATTATCTTCTCCCCTCTATCATGCTGCACTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KIP1

Protein Analysis

297

Amino Acids

34.19

Weight (kDa)

5.75

Isoelectric Point (pI)

63.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002133)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48405 AT3G17680 AT3G17680 AT3G17680
fragaria_vesca	FvH4_5g18280 FvH4_5g18280 FvH4_5g18280 FvH4_5g18280 FvH4_5g18280 FvH4_5g18290
malus_domestica	MD06G1238400.v1.1 MD06G1238700.v1.1 MD14G1244700.v1.1 MD14G1244900.v1.1
prunus_persica	Prupe.5G242300_v2.0.a1 Prupe.5G242300_v2.0.a1 Prupe.5G242300_v2.0.a1 Prupe.5G242300_v2.0.a1 Prupe.5G242300_v2.0.a1 Prupe.5G242300_v2.0.a1 Prupe.5G242600_v2.0.a1
pyrus_communis	pycom06g21390 pycom06g21420 pycom14g20590
rosa_chinensis	RchiOBHm_Chr7g0177291 RchiOBHm_Chr7g0177301
rosa_laevigata	RLG00000005548
rosa_multiflora	Rmu_sc0005310.1_g000008
rosa_roxburghii	Rroxscaffold_3G00275960 Rroxscaffold_3G00275970
rosa_rugosa	Rorug06G0404500 Rorug06G0404600 Rorug06G0404700 Rorug06G0404800
rosa_samantha	Rh7AG004500 Rh7AG004600 Rh7BG004400 Rh7BG004500 Rh7CG004300 Rh7CG004400 Rh7DG004300 Rh7DG004400
rosa_wichuraiana	Rw7G000370 Rw7G000380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	693
AccII	CGCG	1 cut(s)	386
AciI	CCGC	3 cut(s)	73, 384, 504
AclI	AACGTT	1 cut(s)	416
AclWI	GGATC	1 cut(s)	795
AcuI	CTGAAG	1 cut(s)	291
AfeI	AGCGCT	1 cut(s)	567
AflII	CTTAAG	1 cut(s)	611
AgeI	ACCGGT	1 cut(s)	101
AgsI	TTSAA	4 cut(s)	211, 296, 338, 814
AluBI	AGCT	8 cut(s)	355, 428, 457, 491, 553, 595, 670, 717
AluI	AGCT	8 cut(s)	355, 428, 457, 491, 553, 595, 670, 717
Alw21I	GWGCWC	1 cut(s)	555
Alw26I	GTCTC	6 cut(s)	21, 60, 82, 313, 352, 811
AlwI	GGATC	1 cut(s)	795
Aor51HI	AGCGCT	1 cut(s)	567
ApeKI	GCWGC	4 cut(s)	352, 670, 717, 884
AsiGI	ACCGGT	1 cut(s)	101
Asp700I	GAANNNNTTC	1 cut(s)	630
AspLEI	GCGC	1 cut(s)	568
AspS9I	GGNCC	1 cut(s)	202
AsuHPI	GGTGA	1 cut(s)	116
AvaII	GGWCC	1 cut(s)	202
BanII	GRGCYC	1 cut(s)	555
BbsI	GAAGAC	1 cut(s)	345
Bbv12I	GWGCWC	1 cut(s)	555
BbvI	GCAGC	4 cut(s)	364, 657, 704, 871
BccI	CCATC	4 cut(s)	43, 176, 295, 836
BcoDI	GTCTC	6 cut(s)	21, 60, 82, 313, 352, 811
BfaI	CTAG	1 cut(s)	600
BfmI	CTRYAG	2 cut(s)	492, 671
BfoI	RGCGCY	1 cut(s)	569
BfrI	CTTAAG	1 cut(s)	611
BglII	AGATCT	1 cut(s)	172
BisI	GCNGC	4 cut(s)	353, 671, 718, 885
BlsI	GCNGC	4 cut(s)	354, 672, 719, 886
Bme18I	GGWCC	1 cut(s)	202
BmgT120I	GGNCC	1 cut(s)	202
BmsI	GCATC	2 cut(s)	51, 291
BpiI	GAAGAC	1 cut(s)	345
BplI	GAGNNNNNCTC	2 cut(s)	133, 165
BpmI	CTGGAG	2 cut(s)	635, 807
BpuEI	CTTGAG	1 cut(s)	71
BsaI	GGTCTC	1 cut(s)	82
BsaWI	WCCGGW	1 cut(s)	101
Bse118I	RCCGGY	1 cut(s)	101
Bse1I	ACTGG	2 cut(s)	558, 790
BseGI	GGATG	3 cut(s)	10, 66, 628
BseMII	CTCAG	1 cut(s)	26
BseNI	ACTGG	2 cut(s)	558, 790
BseRI	GAGGAG	1 cut(s)	9
BseXI	GCAGC	4 cut(s)	364, 657, 704, 871
BsgI	GTGCAG	1 cut(s)	870
Bsh1236I	CGCG	1 cut(s)	386
BshTI	ACCGGT	1 cut(s)	101
BsiHKAI	GWGCWC	1 cut(s)	555
BsiSI	CCGG	1 cut(s)	102
BsmAI	GTCTC	6 cut(s)	21, 60, 82, 313, 352, 811
Bso31I	GGTCTC	1 cut(s)	82
Bsp1286I	GDGCHC	1 cut(s)	555
Bsp143I	GATC	3 cut(s)	46, 172, 800
BspACI	CCGC	3 cut(s)	73, 384, 504
BspCNI	CTCAG	1 cut(s)	25
BspFNI	CGCG	1 cut(s)	386
BspHI	TCATGA	2 cut(s)	238, 573
BspMAI	CTGCAG	1 cut(s)	675
BspPI	GGATC	1 cut(s)	795
BspTI	CTTAAG	1 cut(s)	611
BspTNI	GGTCTC	1 cut(s)	82
BsrFI	RCCGGY	1 cut(s)	101
BsrI	ACTGG	2 cut(s)	558, 790
BssAI	RCCGGY	1 cut(s)	101
BssMI	GATC	3 cut(s)	46, 172, 800
Bst4CI	ACNGT	2 cut(s)	30, 206
Bst6I	CTCTTC	3 cut(s)	27, 534, 749
BstAFI	CTTAAG	1 cut(s)	611
BstAPI	GCANNNNNTGC	1 cut(s)	70
BstC8I	GCNNGC	4 cut(s)	430, 446, 555, 597
BstDEI	CTNAG	2 cut(s)	12, 343
BstF5I	GGATG	3 cut(s)	10, 66, 628
BstFNI	CGCG	1 cut(s)	386
BstH2I	RGCGCY	1 cut(s)	569
BstHHI	GCGC	1 cut(s)	568
BstKTI	GATC	3 cut(s)	49, 175, 803
BstMAI	GTCTC	6 cut(s)	21, 60, 82, 313, 352, 811
BstMBI	GATC	3 cut(s)	46, 172, 800
BstMWI	GCNNNNNNNGC	3 cut(s)	70, 454, 563
BstSFI	CTRYAG	2 cut(s)	492, 671
BstUI	CGCG	1 cut(s)	386
BstV1I	GCAGC	4 cut(s)	364, 657, 704, 871
BstV2I	GAAGAC	1 cut(s)	345
BstX2I	RGATCY	2 cut(s)	172, 800
BstXI	CCANNNNNNTGG	1 cut(s)	199
BstYI	RGATCY	2 cut(s)	172, 800
BtsCI	GGATG	3 cut(s)	10, 66, 628
BtsIMutI	CAGTG	1 cut(s)	565
Cac8I	GCNNGC	4 cut(s)	430, 446, 555, 597
CciI	TCATGA	2 cut(s)	238, 573
CfoI	GCGC	1 cut(s)	568
Cfr10I	RCCGGY	1 cut(s)	101
Cfr13I	GGNCC	1 cut(s)	202
CspAI	ACCGGT	1 cut(s)	101
CviAII	CATG	3 cut(s)	239, 574, 881
DdeI	CTNAG	2 cut(s)	12, 343
DpnI	GATC	3 cut(s)	48, 174, 802
DpnII	GATC	3 cut(s)	46, 172, 800
Eam1104I	CTCTTC	3 cut(s)	27, 534, 749
EarI	CTCTTC	3 cut(s)	27, 534, 749
Ecl136II	GAGCTC	1 cut(s)	553
Eco24I	GRGCYC	1 cut(s)	555
Eco31I	GGTCTC	1 cut(s)	82
Eco47I	GGWCC	1 cut(s)	202
Eco47III	AGCGCT	1 cut(s)	567
Eco53kI	GAGCTC	1 cut(s)	553
Eco57I	CTGAAG	1 cut(s)	291
EcoICRI	GAGCTC	1 cut(s)	553
EcoT38I	GRGCYC	1 cut(s)	555
FaeI	CATG	3 cut(s)	242, 577, 884
FaiI	YATR	6 cut(s)	240, 323, 395, 476, 575, 882
FatI	CATG	3 cut(s)	238, 573, 880
FauI	CCCGC	1 cut(s)	66
FblI	GTMKAC	1 cut(s)	693
Fnu4HI	GCNGC	4 cut(s)	353, 671, 718, 885
FokI	GGATG	3 cut(s)	17, 73, 635
FriOI	GRGCYC	1 cut(s)	555
Fsp4HI	GCNGC	4 cut(s)	353, 671, 718, 885
FspBI	CTAG	1 cut(s)	600
GlaI	GCGC	1 cut(s)	567
GluI	GCNGC	4 cut(s)	353, 671, 718, 885
GsuI	CTGGAG	2 cut(s)	635, 807
HaeII	RGCGCY	1 cut(s)	569
HapII	CCGG	1 cut(s)	102
HhaI	GCGC	1 cut(s)	568
Hin1II	CATG	3 cut(s)	242, 577, 884
Hin6I	GCGC	1 cut(s)	566
HinP1I	GCGC	1 cut(s)	566
HindIII	AAGCTT	3 cut(s)	426, 455, 593
HinfI	GANTC	3 cut(s)	53, 704, 819
HpaII	CCGG	1 cut(s)	102
HphI	GGTGA	1 cut(s)	116
Hpy166II	GTNNAC	1 cut(s)	694
Hpy188I	TCNGA	4 cut(s)	46, 60, 271, 515
Hpy188III	TCNNGA	8 cut(s)	50, 86, 170, 239, 574, 652, 681, 814
Hpy8I	GTNNAC	1 cut(s)	694
HpyAV	CCTTC	2 cut(s)	164, 475
HpyCH4III	ACNGT	2 cut(s)	30, 206
HpyCH4IV	ACGT	2 cut(s)	121, 416
HpyCH4V	TGCA	7 cut(s)	64, 325, 365, 421, 432, 673, 887
HpyF10VI	GCNNNNNNNGC	3 cut(s)	70, 454, 563
HpyF3I	CTNAG	2 cut(s)	12, 343
HpySE526I	ACGT	2 cut(s)	121, 416
Hsp92II	CATG	3 cut(s)	242, 577, 884
HspAI	GCGC	1 cut(s)	566
Kzo9I	GATC	3 cut(s)	46, 172, 800
LpnPI	CCDG	6 cut(s)	115, 152, 571, 665, 702, 771
Lsp1109I	GCAGC	4 cut(s)	364, 657, 704, 871
LweI	GCATC	2 cut(s)	51, 291
MaeI	CTAG	1 cut(s)	600
MaeII	ACGT	2 cut(s)	121, 416
MaeIII	GTNAC	2 cut(s)	185, 358
MalI	GATC	3 cut(s)	48, 174, 802
MboI	GATC	3 cut(s)	46, 172, 800
MboII	GAAGA	6 cut(s)	14, 350, 509, 551, 766, 858
MfeI	CAATTG	1 cut(s)	438
MflI	RGATCY	2 cut(s)	172, 800
MhlI	GDGCHC	1 cut(s)	555
MluCI	AATT	1 cut(s)	438
MlyI	GAGTC	2 cut(s)	62, 813
MnlI	CCTC	8 cut(s)	19, 30, 159, 246, 542, 612, 718, 884
MroXI	GAANNNNTTC	1 cut(s)	630
MseI	TTAA	2 cut(s)	591, 612
MslI	CAYNNNNRTG	1 cut(s)	243
MspCI	CTTAAG	1 cut(s)	611
MspI	CCGG	1 cut(s)	102
MunI	CAATTG	1 cut(s)	438
MvnI	CGCG	1 cut(s)	386
MwoI	GCNNNNNNNGC	3 cut(s)	70, 454, 563
NdeII	GATC	3 cut(s)	46, 172, 800
NlaIII	CATG	3 cut(s)	242, 577, 884
PagI	TCATGA	2 cut(s)	238, 573
PdmI	GAANNNNTTC	1 cut(s)	630
PfeI	GAWTC	1 cut(s)	704
PflFI	GACNNNGTC	1 cut(s)	344
PinAI	ACCGGT	1 cut(s)	101
PkrI	GCNGC	4 cut(s)	354, 672, 719, 886
PleI	GAGTC	2 cut(s)	61, 813
PpsI	GAGTC	2 cut(s)	61, 813
Psp124BI	GAGCTC	1 cut(s)	555
Psp1406I	AACGTT	1 cut(s)	416
PspPI	GGNCC	1 cut(s)	202
PsrI	GAACNNNNNNTAC	2 cut(s)	647, 679
PstI	CTGCAG	1 cut(s)	675
PsuI	RGATCY	2 cut(s)	172, 800
PsyI	GACNNNGTC	1 cut(s)	344
RseI	CAYNNNNRTG	1 cut(s)	243
SacI	GAGCTC	1 cut(s)	555
SaqAI	TTAA	2 cut(s)	591, 612
SatI	GCNGC	4 cut(s)	353, 671, 718, 885
Sau3AI	GATC	3 cut(s)	46, 172, 800
Sau96I	GGNCC	1 cut(s)	202
SchI	GAGTC	2 cut(s)	62, 813
SduI	GDGCHC	1 cut(s)	555
SfaNI	GCATC	2 cut(s)	51, 291
SfcI	CTRYAG	2 cut(s)	492, 671
SinI	GGWCC	1 cut(s)	202
SmiMI	CAYNNNNRTG	1 cut(s)	243
SmlI	CTYRAG	2 cut(s)	50, 611
SmoI	CTYRAG	2 cut(s)	50, 611
Sse9I	AATT	1 cut(s)	438
SsiI	CCGC	3 cut(s)	73, 384, 504
SspMI	CTAG	1 cut(s)	600
SstI	GAGCTC	1 cut(s)	555
TaaI	ACNGT	2 cut(s)	30, 206
TaiI	ACGT	2 cut(s)	124, 419
TaqI	TCGA	1 cut(s)	680
TasI	AATT	1 cut(s)	438
TfiI	GAWTC	1 cut(s)	704
Tru1I	TTAA	2 cut(s)	591, 612
Tru9I	TTAA	2 cut(s)	591, 612
TscAI	CASTG	1 cut(s)	565
TseI	GCWGC	4 cut(s)	352, 670, 717, 884
TspDTI	ATGAA	4 cut(s)	562, 590, 639, 717
TspRI	CASTG	1 cut(s)	565
Tth111I	GACNNNGTC	1 cut(s)	344
Vha464I	CTTAAG	1 cut(s)	611
VpaK11BI	GGWCC	1 cut(s)	202
XmiI	GTMKAC	1 cut(s)	693
XmnI	GAANNNNTTC	1 cut(s)	630
XspI	CTAG	1 cut(s)	600

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.