Rroxscaffold_3G00275960

KIP1-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0002133
Physical Location & Seq
Reverse (-)
67275844 .. 67279639
3796 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00275960.1

Sequence Viewer

Length: 1341 bp
ATGTTGGTCGTCCTTCTTCATTTGCAGACGGCAAGGGGCTCCCTTTCCTCACGACACAATTCATATCATTTAACGTCGACGTGGTGGGTTTTAACTTTGACAATGGAGAATCCGACACCACCACCACCATCATCAGCTTCTTCTGTTCAAAATCATCAGGAGTCAGTTCCGACTAGTCCAACGTTGTCAAGCACAGGGAAGATGAGCTTAAGCACCGCCCCGACCACCATGGCCACCATCGCCAAACCGACCTGGCTCCTCTCCAACCTTGCCGATGTGGAAGAGAGGATGAAGATGGTAGCATTTAACAGTAACAGTAAAAGTACTAAAACTCCTCAAGATCAAGACACTGGGGATACCTTCGCGGAGCGAGCTGAAGCTTACTACAAAACACGCCCTCAGCTGCTATCCCTACTTCAAGACTTGTACAATTCCTATCTCACTCTCTCTGACCGTTACATTCAAACAATCGCCAAAACTACTAGTCTGAGTCAGAGTCAGAGTTTTCATCCTCCTCGTCGACAATCTTCTCAAACCTCAACCATTGAATACTATGATTACTATGACCAGCAAGATCAATATGAGACTAGCCAGAATGATTCAGATGTGGAGAGCTCCCTCTCGTATCAGCAATTTCCCACATCACTACTTGCTCAAGATGATGATGATGATACCACCATGGTGTCAAGCTTTGATGCAATTGTCGCGGAGATTGTGATAAAAAATGTGGAATGCGATATCCTACTTCATGAGGTCAATGCATCGGAGAGGCAACAAAATGAATCATCGAGGAAGATAGAGTTGCAGAAGAGCTTGCTTGAGGTTTTGGAGTCTGAAAGGCTCATACTACTGAATGAGAATGCTAAATTGGGTTACAGAGTGGGTGCATTGATGGAAGAGAACAAAGCGCTTGCCTCCGAGTCTCTGTTCATGAGGAGGAAGGCCGGTGAGCTAGCTAGGTATTTGCTCCAAATGAGAGAGGATCGGAGGGTTAGCATGCTCAGCCGTAAGATAGAGGACCTTCAGGGACAGATTTATGGGTTGGAGAAGCGGAACAAGGAGTACTACCAGCAACTTGTCAACAATGATCACTCACAACTAGGATCACTTGAAGAAGAGAAGAATAGTAGCAACAAGAAGAAGAAGACTCGTGGTAGAAGTAGTAATGAGGTGGATTTGCACGTTTGCTTTCAAATAGGAAATATGAAGAGGAGAGGTGGTTCTGGGACGAGGACTGGTACGAGGGGTACTGGCACTGACAAGAAAGGTTCTAGTTGGTGGGGAAAGGTCAAGAACATAGACTTGTTTCTATGTGGACTTAACCCAACTTCTACTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KIP1

Protein Analysis

446

Amino Acids

50.38

Weight (kDa)

6.3

Isoelectric Point (pI)

56.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KIP1 PF07765 81 - 153 1.7e-09 KIP1-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 77, 520
AccII CGCG 2 cut(s) 365, 707
AciI CCGC 4 cut(s) 216, 365, 707, 1051
AclI AACGTT 1 cut(s) 182
AclWI GGATC 2 cut(s) 990, 1111
AcoI YGGCCR 1 cut(s) 231
AcuI CTGAAG 2 cut(s) 396, 1007
AfaI GTAC 5 cut(s) 325, 428, 1064, 1240, 1249
AfeI AGCGCT 1 cut(s) 909
AflII CTTAAG 1 cut(s) 208
AgsI TTSAA 6 cut(s) 149, 419, 464, 548, 1112, 1193
AhlI ACTAGT 2 cut(s) 173, 482
AjiI CACGTC 1 cut(s) 81
AjnI CCWGG 1 cut(s) 251
AjuI GAANNNNNNNTTGG 2 cut(s) 851, 883
AleI CACNNNNGTG 1 cut(s) 680
AloI GAACNNNNNNTCC 2 cut(s) 1204, 1236
Alw21I GWGCWC 1 cut(s) 617
Alw26I GTCTC 2 cut(s) 578, 927
AlwI GGATC 2 cut(s) 990, 1111
Aor51HI AGCGCT 1 cut(s) 909
AoxI GGCC 2 cut(s) 231, 942
ApeKI GCWGC 1 cut(s) 403
AspLEI GCGC 1 cut(s) 910
AspS9I GGNCC 1 cut(s) 1018
AsuHPI GGTGA 1 cut(s) 959
AsuNHI GCTAGC 1 cut(s) 952
AvaII GGWCC 1 cut(s) 1018
BalI TGGCCA 1 cut(s) 233
BanII GRGCYC 2 cut(s) 41, 617
BauI CACGAG 1 cut(s) 1149
BbsI GAAGAC 1 cut(s) 1151
Bbv12I GWGCWC 1 cut(s) 617
BbvCI CCTCAGC 1 cut(s) 399
BbvI GCAGC 1 cut(s) 390
BccI CCATC 4 cut(s) 136, 245, 289, 886
BceAI ACGGC 2 cut(s) 45, 990
BciT130I CCWGG 1 cut(s) 253
BciVI GTATCC 1 cut(s) 349
BclI TGATCA 1 cut(s) 1087
BcoDI GTCTC 2 cut(s) 578, 927
BcuI ACTAGT 2 cut(s) 173, 482
BfaI CTAG 7 cut(s) 174, 483, 588, 953, 957, 1100, 1272
BfoI RGCGCY 1 cut(s) 911
BfrI CTTAAG 1 cut(s) 208
BfuI GTATCC 1 cut(s) 349
BisI GCNGC 1 cut(s) 404
BlpI GCTNAGC 1 cut(s) 1001
BlsI GCNGC 1 cut(s) 405
BmcAI AGTACT 2 cut(s) 325, 1064
Bme1390I CCNGG 1 cut(s) 253
Bme18I GGWCC 1 cut(s) 1018
BmgBI CACGTC 1 cut(s) 81
BmgT120I GGNCC 1 cut(s) 1018
BmiI GGNNCC 2 cut(s) 40, 257
BmrFI CCNGG 1 cut(s) 253
BmrI ACTGGG 1 cut(s) 360
BmsI GCATC 2 cut(s) 685, 770
BmtI GCTAGC 1 cut(s) 956
BmuI ACTGGG 1 cut(s) 360
BpiI GAAGAC 1 cut(s) 1151
Bpu10I CCTNAGC 1 cut(s) 399
Bpu1102I GCTNAGC 1 cut(s) 1001
BpuEI CTTGAG 3 cut(s) 321, 639, 839
BsaJI CCNNGG 2 cut(s) 228, 678
BsaXI ACNNNNNCTCC 4 cut(s) 316, 346, 1204, 1234
Bse118I RCCGGY 1 cut(s) 944
Bse1I ACTGG 3 cut(s) 355, 1240, 1255
BseBI CCWGG 1 cut(s) 253
BseDI CCNNGG 2 cut(s) 228, 678
BseGI GGATG 2 cut(s) 294, 508
BseMII CTCAG 3 cut(s) 413, 479, 1015
BseNI ACTGG 3 cut(s) 355, 1240, 1255
BseRI GAGGAG 5 cut(s) 248, 324, 504, 949, 1225
BseXI GCAGC 1 cut(s) 390
Bsh1236I CGCG 2 cut(s) 365, 707
BshFI GGCC 2 cut(s) 233, 944
BsiHKAI GWGCWC 1 cut(s) 617
BsiSI CCGG 1 cut(s) 945
BslFI GGGAC 2 cut(s) 1041, 1240
BsmAI GTCTC 2 cut(s) 578, 927
BsmFI GGGAC 2 cut(s) 1041, 1240
BsmI GAATGC 2 cut(s) 737, 865
BsnI GGCC 2 cut(s) 233, 944
Bsp1286I GDGCHC 2 cut(s) 41, 617
Bsp1407I TGTACA 1 cut(s) 426
Bsp143I GATC 5 cut(s) 340, 574, 982, 1087, 1103
Bsp1720I GCTNAGC 1 cut(s) 1001
Bsp19I CCATGG 2 cut(s) 228, 678
BspACI CCGC 4 cut(s) 216, 365, 707, 1051
BspANI GGCC 2 cut(s) 233, 944
BspCNI CTCAG 3 cut(s) 412, 480, 1014
BspFNI CGCG 2 cut(s) 365, 707
BspHI TCATGA 2 cut(s) 748, 930
BspLI GGNNCC 2 cut(s) 40, 257
BspOI GCTAGC 1 cut(s) 956
BspPI GGATC 2 cut(s) 990, 1111
BspQI GCTCTTC 1 cut(s) 803
BspTI CTTAAG 1 cut(s) 208
BsrFI RCCGGY 1 cut(s) 944
BsrGI TGTACA 1 cut(s) 426
BsrI ACTGG 3 cut(s) 355, 1240, 1255
BssAI RCCGGY 1 cut(s) 944
BssECI CCNNGG 2 cut(s) 228, 678
BssMI GATC 5 cut(s) 340, 574, 982, 1087, 1103
BssSI CACGAG 1 cut(s) 1149
BssT1I CCWWGG 2 cut(s) 228, 678
Bst2BI CACGAG 1 cut(s) 1149
Bst2UI CCWGG 1 cut(s) 253
Bst4CI ACNGT 3 cut(s) 311, 317, 455
Bst6I CTCTTC 5 cut(s) 276, 803, 891, 1110, 1202
BstAFI CTTAAG 1 cut(s) 208
BstAUI TGTACA 1 cut(s) 426
BstC8I GCNNGC 5 cut(s) 372, 815, 912, 954, 998
BstDEI CTNAG 3 cut(s) 399, 488, 1001
BstDSI CCRYGG 2 cut(s) 228, 678
BstF5I GGATG 2 cut(s) 294, 508
BstFNI CGCG 2 cut(s) 365, 707
BstH2I RGCGCY 1 cut(s) 911
BstHHI GCGC 1 cut(s) 910
BstKTI GATC 5 cut(s) 343, 577, 985, 1090, 1106
BstMAI GTCTC 2 cut(s) 578, 927
BstMBI GATC 5 cut(s) 340, 574, 982, 1087, 1103
BstMWI GCNNNNNNNGC 4 cut(s) 239, 371, 704, 1002
BstNI CCWGG 1 cut(s) 253
BstNSI RCATGY 1 cut(s) 1000
BstSCI CCNGG 1 cut(s) 251
BstUI CGCG 2 cut(s) 365, 707
BstV1I GCAGC 1 cut(s) 390
BstV2I GAAGAC 1 cut(s) 1151
BsuI GTATCC 1 cut(s) 349
BsuRI GGCC 2 cut(s) 233, 944
BtgI CCRYGG 2 cut(s) 228, 678
BtgZI GCGATG 1 cut(s) 223
BtrI CACGTC 1 cut(s) 81
BtsCI GGATG 2 cut(s) 294, 508
BtsIMutI CAGTG 2 cut(s) 348, 1254
Cac8I GCNNGC 5 cut(s) 372, 815, 912, 954, 998
CciI TCATGA 2 cut(s) 748, 930
CfoI GCGC 1 cut(s) 910
Cfr10I RCCGGY 1 cut(s) 944
Cfr13I GGNCC 1 cut(s) 1018
Csp6I GTAC 5 cut(s) 324, 427, 1063, 1239, 1248
CviAII CATG 5 cut(s) 229, 679, 749, 931, 997
CviQI GTAC 5 cut(s) 324, 427, 1063, 1239, 1248
DdeI CTNAG 3 cut(s) 399, 488, 1001
DpnI GATC 5 cut(s) 342, 576, 984, 1089, 1105
DpnII GATC 5 cut(s) 340, 574, 982, 1087, 1103
EaeI YGGCCR 1 cut(s) 231
Eam1104I CTCTTC 5 cut(s) 276, 803, 891, 1110, 1202
EarI CTCTTC 5 cut(s) 276, 803, 891, 1110, 1202
Ecl136II GAGCTC 1 cut(s) 615
Eco130I CCWWGG 2 cut(s) 228, 678
Eco24I GRGCYC 2 cut(s) 41, 617
Eco32I GATATC 1 cut(s) 739
Eco47I GGWCC 1 cut(s) 1018
Eco47III AGCGCT 1 cut(s) 909
Eco53kI GAGCTC 1 cut(s) 615
Eco57I CTGAAG 2 cut(s) 396, 1007
EcoICRI GAGCTC 1 cut(s) 615
EcoO109I RGGNCCY 1 cut(s) 1018
EcoRII CCWGG 1 cut(s) 251
EcoRV GATATC 1 cut(s) 739
EcoT14I CCWWGG 2 cut(s) 228, 678
EcoT22I ATGCAT 1 cut(s) 763
EcoT38I GRGCYC 2 cut(s) 41, 617
ErhI CCWWGG 2 cut(s) 228, 678
FaeI CATG 5 cut(s) 232, 682, 752, 934, 1000
FalI AAGNNNNNCTT 2 cut(s) 191, 223
FaqI GGGAC 2 cut(s) 1041, 1240
FatI CATG 5 cut(s) 228, 678, 748, 930, 996
FbaI TGATCA 1 cut(s) 1087
FblI GTMKAC 2 cut(s) 77, 520
Fnu4HI GCNGC 1 cut(s) 404
FokI GGATG 2 cut(s) 301, 495
FriOI GRGCYC 2 cut(s) 41, 617
Fsp4HI GCNGC 1 cut(s) 404
FspBI CTAG 7 cut(s) 174, 483, 588, 953, 957, 1100, 1272
GlaI GCGC 1 cut(s) 909
GluI GCNGC 1 cut(s) 404
HaeII RGCGCY 1 cut(s) 911
HaeIII GGCC 2 cut(s) 233, 944
HapII CCGG 1 cut(s) 945
HhaI GCGC 1 cut(s) 910
Hin1II CATG 5 cut(s) 232, 682, 752, 934, 1000
Hin6I GCGC 1 cut(s) 908
HinP1I GCGC 1 cut(s) 908
HincII GTYRAC 3 cut(s) 78, 521, 1081
HindII GTYRAC 3 cut(s) 78, 521, 1081
HindIII AAGCTT 2 cut(s) 378, 688
HinfI GANTC 9 cut(s) 109, 161, 490, 496, 599, 782, 830, 920, 1147
HpaII CCGG 1 cut(s) 945
HphI GGTGA 1 cut(s) 959
Hpy166II GTNNAC 4 cut(s) 78, 521, 1081, 1316
Hpy188III TCNNGA 9 cut(s) 51, 158, 338, 344, 419, 656, 749, 931, 1291
Hpy8I GTNNAC 4 cut(s) 78, 521, 1081, 1316
Hpy99I CGWCG 3 cut(s) 79, 82, 522
HpyAV CCTTC 4 cut(s) 23, 370, 934, 1031
HpyCH4III ACNGT 3 cut(s) 311, 317, 455
HpyCH4IV ACGT 4 cut(s) 74, 80, 182, 1182
HpyCH4V TGCA 6 cut(s) 25, 698, 761, 805, 887, 1180
HpyF10VI GCNNNNNNNGC 4 cut(s) 239, 371, 704, 1002
HpyF3I CTNAG 3 cut(s) 399, 488, 1001
HpySE526I ACGT 4 cut(s) 74, 80, 182, 1182
Hsp92II CATG 5 cut(s) 232, 682, 752, 934, 1000
HspAI GCGC 1 cut(s) 908
Ksp22I TGATCA 1 cut(s) 1087
Kzo9I GATC 5 cut(s) 340, 574, 982, 1087, 1103
LguI GCTCTTC 1 cut(s) 803
LmnI GCTCC 5 cut(s) 44, 261, 367, 620, 972
Lsp1109I GCAGC 1 cut(s) 390
LweI GCATC 2 cut(s) 685, 770
MaeI CTAG 7 cut(s) 174, 483, 588, 953, 957, 1100, 1272
MaeII ACGT 4 cut(s) 74, 80, 182, 1182
MaeIII GTNAC 3 cut(s) 311, 455, 872
MalI GATC 5 cut(s) 342, 576, 984, 1089, 1105
MboI GATC 5 cut(s) 340, 574, 982, 1087, 1103
MfeI CAATTG 1 cut(s) 699
MhlI GDGCHC 2 cut(s) 41, 617
MlsI TGGCCA 1 cut(s) 233
MluCI AATT 5 cut(s) 58, 430, 632, 699, 866
MluNI TGGCCA 1 cut(s) 233
MlyI GAGTC 6 cut(s) 170, 499, 505, 839, 929, 1141
MmeI TCCRAC 5 cut(s) 137, 194, 203, 288, 1023
Mox20I TGGCCA 1 cut(s) 233
Mph1103I ATGCAT 1 cut(s) 763
MscI TGGCCA 1 cut(s) 233
MseI TTAA 5 cut(s) 71, 92, 209, 306, 1320
MslI CAYNNNNRTG 1 cut(s) 680
Msp20I TGGCCA 1 cut(s) 233
MspA1I CMGCKG 1 cut(s) 403
MspCI CTTAAG 1 cut(s) 208
MspI CCGG 1 cut(s) 945
MspR9I CCNGG 1 cut(s) 253
MunI CAATTG 1 cut(s) 699
Mva1269I GAATGC 2 cut(s) 737, 865
MvaI CCWGG 1 cut(s) 253
MvnI CGCG 2 cut(s) 365, 707
MwoI GCNNNNNNNGC 4 cut(s) 239, 371, 704, 1002
NcoI CCATGG 2 cut(s) 228, 678
NdeII GATC 5 cut(s) 340, 574, 982, 1087, 1103
NheI GCTAGC 1 cut(s) 952
NlaIII CATG 5 cut(s) 232, 682, 752, 934, 1000
NlaIV GGNNCC 2 cut(s) 40, 257
NsiI ATGCAT 1 cut(s) 763
NspI RCATGY 1 cut(s) 1000
OliI CACNNNNGTG 1 cut(s) 680
PaeI GCATGC 1 cut(s) 1000
PagI TCATGA 2 cut(s) 748, 930
PciSI GCTCTTC 1 cut(s) 803
PctI GAATGC 2 cut(s) 737, 865
PfeI GAWTC 3 cut(s) 109, 599, 782
PkrI GCNGC 1 cut(s) 405
PleI GAGTC 6 cut(s) 169, 498, 504, 838, 928, 1141
PpsI GAGTC 6 cut(s) 169, 498, 504, 838, 928, 1141
PpuMI RGGWCCY 1 cut(s) 1018
Psp124BI GAGCTC 1 cut(s) 617
Psp1406I AACGTT 1 cut(s) 182
Psp5II RGGWCCY 1 cut(s) 1018
Psp6I CCWGG 1 cut(s) 251
PspGI CCWGG 1 cut(s) 251
PspN4I GGNNCC 2 cut(s) 40, 257
PspPI GGNCC 1 cut(s) 1018
PspPPI RGGWCCY 1 cut(s) 1018
PsrI GAACNNNNNNTAC 2 cut(s) 1046, 1078
PvuII CAGCTG 1 cut(s) 403
RsaI GTAC 5 cut(s) 325, 428, 1064, 1240, 1249
RsaNI GTAC 5 cut(s) 324, 427, 1063, 1239, 1248
RseI CAYNNNNRTG 1 cut(s) 680
SacI GAGCTC 1 cut(s) 617
SalI GTCGAC 2 cut(s) 76, 519
SapI GCTCTTC 1 cut(s) 803
SaqAI TTAA 5 cut(s) 71, 92, 209, 306, 1320
SatI GCNGC 1 cut(s) 404
Sau3AI GATC 5 cut(s) 340, 574, 982, 1087, 1103
Sau96I GGNCC 1 cut(s) 1018
ScaI AGTACT 2 cut(s) 325, 1064
SchI GAGTC 6 cut(s) 170, 499, 505, 839, 929, 1141
ScrFI CCNGG 1 cut(s) 253
SduI GDGCHC 2 cut(s) 41, 617
SfaNI GCATC 2 cut(s) 685, 770
SgrDI CGTCGACG 1 cut(s) 76
SinI GGWCC 1 cut(s) 1018
SmiMI CAYNNNNRTG 1 cut(s) 680
SmlI CTYRAG 4 cut(s) 208, 336, 654, 818
SmoI CTYRAG 4 cut(s) 208, 336, 654, 818
SpeI ACTAGT 2 cut(s) 173, 482
SphI GCATGC 1 cut(s) 1000
Sse9I AATT 5 cut(s) 58, 430, 632, 699, 866
SsiI CCGC 4 cut(s) 216, 365, 707, 1051
SspMI CTAG 7 cut(s) 174, 483, 588, 953, 957, 1100, 1272
SstI GAGCTC 1 cut(s) 617
StyD4I CCNGG 1 cut(s) 251
StyI CCWWGG 2 cut(s) 228, 678
TaaI ACNGT 3 cut(s) 311, 317, 455
TaiI ACGT 4 cut(s) 77, 83, 185, 1185
TaqI TCGA 3 cut(s) 77, 520, 788
TasI AATT 5 cut(s) 58, 430, 632, 699, 866
TatI WGTACW 3 cut(s) 323, 426, 1062
TfiI GAWTC 3 cut(s) 109, 599, 782
Tru1I TTAA 5 cut(s) 71, 92, 209, 306, 1320
Tru9I TTAA 5 cut(s) 71, 92, 209, 306, 1320
TscAI CASTG 2 cut(s) 355, 1261
TseI GCWGC 1 cut(s) 403
TspDTI ATGAA 8 cut(s) 8, 51, 305, 497, 737, 795, 919, 1220
TspRI CASTG 2 cut(s) 355, 1261
Vha464I CTTAAG 1 cut(s) 208
VpaK11BI GGWCC 1 cut(s) 1018
XceI RCATGY 1 cut(s) 1000
XmiI GTMKAC 2 cut(s) 77, 520
XspI CTAG 7 cut(s) 174, 483, 588, 953, 957, 1100, 1272
ZrmI AGTACT 2 cut(s) 325, 1064
Zsp2I ATGCAT 1 cut(s) 763
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.