Rorug06G0404700

KIP1-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0002133
Physical Location & Seq
Reverse (-)
54848159 .. 54849828
1670 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0404700.1

Sequence Viewer

Length: 834 bp
ATGCCCACAACTCCTCCTGAAGTTTCCGAGATCAAACGGCCGAGACTAATCCAGAGCATGCCTGCTGCTTACCCACCCCCGTCCTCGGCCGACCCGCTTCCCTGCCCGCGCTGCAACTCCACCCAGACGAAGTTCTGCTACTACAACAACTACAACCTCGCTCAGCCCCGCCACTTCTGCAAGGGCTGCCGCCGCTACTGGACTCGTGGTGGGGCCCTCCGCAACGTCCCCGTCGGCGGCGGAACTCGCAACAAGAAACTCAAACTCTCTCACCGCGCCTCCTCCTCCAACTCCTCCAGCTCGCCTTCCTCTTCGTCCCTCACCCACGAGACCACCGCACCGAACAAACCCACTTCCGACTCCTCTGTGGAAAAGCCCGATTTGCCCTCCGACCAACAACAACTTCTCAACCTGAACGACAACGTTACGAGTGAAGGAGGGTTTTCGTTTCTGACGATGATGAACGCTCAGGAACAACAACCTGCGTTTTTGTCCCTTGGTGGGTACGGGTACGGGTCGGGGTTTGCCCATGGGTTCCAGCAAGGTTACGGGTACGGCGCCAGAGCCGCAGGGGTTGATTTTCCGACGGAGATGGTCGGTGCTTTTGCTGGTGTCTATGGTGTTCCTGGGGCTGCTGCTTCTTCCGGGTTTGACATCAACACGTGGCAGATGGCGGTTGCTGATCATGAAGGTCAAGGTGGTGGATTGGTTGATTGGCCGGAGGTTCAGATTCTCGATTCCGTGCCAGCTGTCAGTGGTGGTGGTGCTGTCAAGGAAGAAAAGGTGGCAGCTGATACCTCAACCGACCCTTGTCTTAATTTCCCTGCATTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KIP1

Protein Analysis

277

Amino Acids

29.37

Weight (kDa)

6.2

Isoelectric Point (pI)

48.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_Dof PF02701 32 - 86 5.1e-32 Dof domain, zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 490
AccB1I GGYRCC 1 cut(s) 557
AccII CGCG 2 cut(s) 109, 276
AclI AACGTT 1 cut(s) 423
AcoI YGGCCR 3 cut(s) 38, 87, 716
AcuI CTGAAG 1 cut(s) 39
AcvI CACGTG 1 cut(s) 663
AcyI GRCGYC 1 cut(s) 558
AfaI GTAC 3 cut(s) 506, 512, 554
AfiI CCNNNNNNNGG 3 cut(s) 85, 236, 501
AflIII ACRYGT 1 cut(s) 660
AjnI CCWGG 1 cut(s) 625
AjuI GAANNNNNNNTTGG 2 cut(s) 387, 419
AluBI AGCT 3 cut(s) 300, 749, 791
AluI AGCT 3 cut(s) 300, 749, 791
Alw26I GTCTC 2 cut(s) 37, 323
AoxI GGCC 4 cut(s) 38, 87, 213, 716
ApaI GGGCCC 1 cut(s) 217
ApeKI GCWGC 6 cut(s) 65, 111, 186, 632, 635, 788
AspLEI GCGC 3 cut(s) 111, 278, 560
AspS9I GGNCC 2 cut(s) 213, 214
AsuC2I CCSGG 1 cut(s) 646
AsuHPI GGTGA 2 cut(s) 263, 313
BaeGI GKGCMC 1 cut(s) 217
BanI GGYRCC 1 cut(s) 557
BanII GRGCYC 1 cut(s) 217
BarI GAAGNNNNNNTAC 2 cut(s) 122, 154
BauI CACGAG 2 cut(s) 204, 326
BbrPI CACGTG 1 cut(s) 663
BbvI GCAGC 6 cut(s) 52, 98, 173, 619, 622, 800
BccI CCATC 2 cut(s) 586, 664
BceAI ACGGC 2 cut(s) 53, 571
BciT130I CCWGG 1 cut(s) 627
BclI TGATCA 1 cut(s) 682
BcnI CCSGG 1 cut(s) 646
BcoDI GTCTC 2 cut(s) 37, 323
BfoI RGCGCY 1 cut(s) 561
BfuAI ACCTGC 1 cut(s) 490
BlpI GCTNAGC 1 cut(s) 162
Bme1390I CCNGG 2 cut(s) 627, 646
BmgT120I GGNCC 2 cut(s) 213, 214
BmiI GGNNCC 4 cut(s) 214, 215, 536, 559
BmrFI CCNGG 2 cut(s) 627, 646
BoxI GACNNNNGTC 1 cut(s) 810
BpmI CTGGAG 1 cut(s) 280
Bpu10I CCTNAGC 1 cut(s) 468
Bpu1102I GCTNAGC 1 cut(s) 162
BpuMI CCSGG 1 cut(s) 646
BsaAI YACGTR 1 cut(s) 663
BsaHI GRCGYC 1 cut(s) 558
BsaI GGTCTC 1 cut(s) 323
BsaJI CCNNGG 4 cut(s) 84, 496, 529, 626
BsaXI ACNNNNNCTCC 3 cut(s) 28, 263, 293
Bsc4I CCNNNNNNNGG 3 cut(s) 85, 236, 501
Bse1I ACTGG 1 cut(s) 203
BseBI CCWGG 1 cut(s) 627
BseDI CCNNGG 4 cut(s) 84, 496, 529, 626
BseLI CCNNNNNNNGG 3 cut(s) 85, 236, 501
BseMII CTCAG 2 cut(s) 176, 482
BseNI ACTGG 1 cut(s) 203
BseRI GAGGAG 4 cut(s) 271, 274, 283, 352
BseSI GKGCMC 1 cut(s) 217
BseX3I CGGCCG 2 cut(s) 38, 87
BseXI GCAGC 6 cut(s) 52, 98, 173, 619, 622, 800
Bsh1236I CGCG 2 cut(s) 109, 276
Bsh1285I CGRYCG 2 cut(s) 41, 90
BshFI GGCC 4 cut(s) 40, 89, 215, 718
BshNI GGYRCC 1 cut(s) 557
BsiEI CGRYCG 2 cut(s) 41, 90
BsiSI CCGG 2 cut(s) 645, 719
BslFI GGGAC 3 cut(s) 212, 301, 478
BslI CCNNNNNNNGG 3 cut(s) 85, 236, 501
BsmAI GTCTC 2 cut(s) 37, 323
BsmFI GGGAC 3 cut(s) 212, 301, 478
BsmI GAATGC 1 cut(s) 827
BsnI GGCC 4 cut(s) 40, 89, 215, 718
Bso31I GGTCTC 1 cut(s) 323
Bsp120I GGGCCC 1 cut(s) 213
Bsp1286I GDGCHC 1 cut(s) 217
Bsp143I GATC 2 cut(s) 30, 682
Bsp1720I GCTNAGC 1 cut(s) 162
Bsp19I CCATGG 1 cut(s) 529
BspANI GGCC 4 cut(s) 40, 89, 215, 718
BspCNI CTCAG 2 cut(s) 175, 481
BspFNI CGCG 2 cut(s) 109, 276
BspHI TCATGA 1 cut(s) 685
BspLI GGNNCC 4 cut(s) 214, 215, 536, 559
BspMI ACCTGC 1 cut(s) 490
BspT107I GGYRCC 1 cut(s) 557
BspTNI GGTCTC 1 cut(s) 323
BsrI ACTGG 1 cut(s) 203
BssECI CCNNGG 4 cut(s) 84, 496, 529, 626
BssMI GATC 2 cut(s) 30, 682
BssNI GRCGYC 1 cut(s) 558
BssSI CACGAG 2 cut(s) 204, 326
BssT1I CCWWGG 2 cut(s) 496, 529
Bst2BI CACGAG 2 cut(s) 204, 326
Bst2UI CCWGG 1 cut(s) 627
Bst6I CTCTTC 1 cut(s) 316
BstACI GRCGYC 1 cut(s) 558
BstAPI GCANNNNNTGC 1 cut(s) 186
BstBAI YACGTR 1 cut(s) 663
BstC8I GCNNGC 5 cut(s) 59, 63, 107, 302, 747
BstDEI CTNAG 2 cut(s) 162, 468
BstDSI CCRYGG 1 cut(s) 529
BstFNI CGCG 2 cut(s) 109, 276
BstH2I RGCGCY 1 cut(s) 561
BstHHI GCGC 3 cut(s) 111, 278, 560
BstKTI GATC 2 cut(s) 33, 685
BstMAI GTCTC 2 cut(s) 37, 323
BstMBI GATC 2 cut(s) 30, 682
BstMCI CGRYCG 2 cut(s) 41, 90
BstMWI GCNNNNNNNGC 7 cut(s) 111, 177, 186, 192, 246, 382, 566
BstNI CCWGG 1 cut(s) 627
BstNSI RCATGY 1 cut(s) 61
BstPAI GACNNNNGTC 1 cut(s) 810
BstSCI CCNGG 2 cut(s) 625, 644
BstSLI GKGCMC 1 cut(s) 217
BstUI CGCG 2 cut(s) 109, 276
BstV1I GCAGC 6 cut(s) 52, 98, 173, 619, 622, 800
BstZI CGGCCG 2 cut(s) 38, 87
BsuRI GGCC 4 cut(s) 40, 89, 215, 718
BtgI CCRYGG 1 cut(s) 529
BtsIMutI CAGTG 1 cut(s) 760
BveI ACCTGC 1 cut(s) 490
Cac8I GCNNGC 5 cut(s) 59, 63, 107, 302, 747
CciI TCATGA 1 cut(s) 685
CfoI GCGC 3 cut(s) 111, 278, 560
Cfr13I GGNCC 2 cut(s) 213, 214
Csp6I GTAC 3 cut(s) 505, 511, 553
CviAII CATG 3 cut(s) 58, 530, 686
CviQI GTAC 3 cut(s) 505, 511, 553
DdeI CTNAG 2 cut(s) 162, 468
DinI GGCGCC 1 cut(s) 559
DpnI GATC 2 cut(s) 32, 684
DpnII GATC 2 cut(s) 30, 682
EaeI YGGCCR 3 cut(s) 38, 87, 716
EagI CGGCCG 2 cut(s) 38, 87
Eam1104I CTCTTC 1 cut(s) 316
EarI CTCTTC 1 cut(s) 316
EciI GGCGGA 1 cut(s) 255
EclXI CGGCCG 2 cut(s) 38, 87
Eco130I CCWWGG 2 cut(s) 496, 529
Eco24I GRGCYC 1 cut(s) 217
Eco31I GGTCTC 1 cut(s) 323
Eco52I CGGCCG 2 cut(s) 38, 87
Eco57I CTGAAG 1 cut(s) 39
Eco72I CACGTG 1 cut(s) 663
EcoO109I RGGNCCY 2 cut(s) 213, 214
EcoRII CCWGG 1 cut(s) 625
EcoT14I CCWWGG 2 cut(s) 496, 529
EcoT38I GRGCYC 1 cut(s) 217
EgeI GGCGCC 1 cut(s) 559
EheI GGCGCC 1 cut(s) 559
ErhI CCWWGG 2 cut(s) 496, 529
FaeI CATG 3 cut(s) 61, 533, 689
FaiI YATR 4 cut(s) 59, 531, 618, 687
FaqI GGGAC 3 cut(s) 212, 301, 478
FatI CATG 3 cut(s) 57, 529, 685
FauI CCCGC 3 cut(s) 102, 114, 176
FbaI TGATCA 1 cut(s) 682
FriOI GRGCYC 1 cut(s) 217
GlaI GCGC 3 cut(s) 110, 277, 559
GsuI CTGGAG 1 cut(s) 280
HaeII RGCGCY 1 cut(s) 561
HaeIII GGCC 4 cut(s) 40, 89, 215, 718
HapII CCGG 2 cut(s) 645, 719
HhaI GCGC 3 cut(s) 111, 278, 560
Hin1I GRCGYC 1 cut(s) 558
Hin1II CATG 3 cut(s) 61, 533, 689
Hin6I GCGC 3 cut(s) 109, 276, 558
HinP1I GCGC 3 cut(s) 109, 276, 558
HinfI GANTC 4 cut(s) 202, 359, 730, 737
HpaII CCGG 2 cut(s) 645, 719
HphI GGTGA 2 cut(s) 263, 313
Hpy188I TCNGA 7 cut(s) 28, 358, 391, 453, 585, 729, 833
Hpy188III TCNNGA 5 cut(s) 17, 52, 470, 686, 734
Hpy99I CGWCG 2 cut(s) 236, 589
HpyAV CCTTC 3 cut(s) 315, 428, 683
HpyCH4IV ACGT 3 cut(s) 225, 423, 662
HpyCH4V TGCA 3 cut(s) 114, 180, 827
HpyF10VI GCNNNNNNNGC 7 cut(s) 111, 177, 186, 192, 246, 382, 566
HpyF3I CTNAG 2 cut(s) 162, 468
HpySE526I ACGT 3 cut(s) 225, 423, 662
Hsp92I GRCGYC 1 cut(s) 558
Hsp92II CATG 3 cut(s) 61, 533, 689
HspAI GCGC 3 cut(s) 109, 276, 558
KasI GGCGCC 1 cut(s) 557
Ksp22I TGATCA 1 cut(s) 682
Kzo9I GATC 2 cut(s) 30, 682
Lsp1109I GCAGC 6 cut(s) 52, 98, 173, 619, 622, 800
MaeII ACGT 3 cut(s) 225, 423, 662
MaeIII GTNAC 2 cut(s) 424, 545
MalI GATC 2 cut(s) 32, 684
MboI GATC 2 cut(s) 30, 682
MboII GAAGA 3 cut(s) 303, 633, 788
MhlI GDGCHC 1 cut(s) 217
MluCI AATT 1 cut(s) 817
Mly113I GGCGCC 1 cut(s) 558
MlyI GAGTC 2 cut(s) 196, 353
MmeI TCCRAC 4 cut(s) 312, 381, 414, 608
MseI TTAA 1 cut(s) 816
MspA1I CMGCKG 2 cut(s) 749, 791
MspI CCGG 2 cut(s) 645, 719
MspR9I CCNGG 2 cut(s) 627, 646
Mva1269I GAATGC 1 cut(s) 827
MvaI CCWGG 1 cut(s) 627
MvnI CGCG 2 cut(s) 109, 276
MwoI GCNNNNNNNGC 7 cut(s) 111, 177, 186, 192, 246, 382, 566
NarI GGCGCC 1 cut(s) 558
NciI CCSGG 1 cut(s) 646
NcoI CCATGG 1 cut(s) 529
NdeII GATC 2 cut(s) 30, 682
NlaIII CATG 3 cut(s) 61, 533, 689
NlaIV GGNNCC 4 cut(s) 214, 215, 536, 559
NmeAIII GCCGAG 2 cut(s) 65, 66
NspI RCATGY 1 cut(s) 61
PaeI GCATGC 1 cut(s) 61
PagI TCATGA 1 cut(s) 685
PcsI WCGNNNNNNNCGW 1 cut(s) 452
PctI GAATGC 1 cut(s) 827
PfeI GAWTC 2 cut(s) 730, 737
PleI GAGTC 2 cut(s) 196, 353
PluTI GGCGCC 1 cut(s) 561
PmaCI CACGTG 1 cut(s) 663
PmlI CACGTG 1 cut(s) 663
PpsI GAGTC 2 cut(s) 196, 353
Ppu21I YACGTR 1 cut(s) 663
PshAI GACNNNNGTC 1 cut(s) 810
Psp1406I AACGTT 1 cut(s) 423
Psp6I CCWGG 1 cut(s) 625
PspCI CACGTG 1 cut(s) 663
PspGI CCWGG 1 cut(s) 625
PspN4I GGNNCC 4 cut(s) 214, 215, 536, 559
PspOMI GGGCCC 1 cut(s) 213
PspPI GGNCC 2 cut(s) 213, 214
PvuII CAGCTG 2 cut(s) 749, 791
RsaI GTAC 3 cut(s) 506, 512, 554
RsaNI GTAC 3 cut(s) 505, 511, 553
SaqAI TTAA 1 cut(s) 816
Sau3AI GATC 2 cut(s) 30, 682
Sau96I GGNCC 2 cut(s) 213, 214
SchI GAGTC 2 cut(s) 196, 353
ScrFI CCNGG 2 cut(s) 627, 646
SduI GDGCHC 1 cut(s) 217
SfoI GGCGCC 1 cut(s) 559
SphI GCATGC 1 cut(s) 61
Sse9I AATT 1 cut(s) 817
SspDI GGCGCC 1 cut(s) 557
StyD4I CCNGG 2 cut(s) 625, 644
StyI CCWWGG 2 cut(s) 496, 529
TaiI ACGT 3 cut(s) 228, 426, 665
TaqI TCGA 1 cut(s) 735
TasI AATT 1 cut(s) 817
TauI GCSGC 4 cut(s) 192, 195, 240, 569
TfiI GAWTC 2 cut(s) 730, 737
Tru1I TTAA 1 cut(s) 816
Tru9I TTAA 1 cut(s) 816
TscAI CASTG 1 cut(s) 760
TseI GCWGC 6 cut(s) 65, 111, 186, 632, 635, 788
TspDTI ATGAA 2 cut(s) 476, 702
TspGWI ACGGA 2 cut(s) 602, 730
TspRI CASTG 1 cut(s) 760
XceI RCATGY 1 cut(s) 61
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.