Rh7CG004400

KIP1-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0002133
Physical Location & Seq
Forward (+)
396569 .. 400144
3576 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG004400.1

Sequence Viewer

Length: 1074 bp
ATGTCAGATGTGGAAGAGAGGATGAAGATGCTAGCGTTTAACAGTAACAGTAAAAGTACTAAAACTCCTCAAGATCAAGACAATGGGGACACCTTCGCGGAGCGAGCTGAAGCTTACTACAAAACACGCCCTCAGCTGCTAGCCCTACTTCAAGACTTGTACAATTCCTATCTCACTCTCTCTGACCGTTACATTCAAACAATCGCCAAAACTACTAGTCTGAGTCAGAGTCAGATTTTTCATCCTCCTCGTCGACAATCTTCTCAAACCTCAACCATTGAATACTATGATTACTATGACCAGCAAGATCAATATGAGACTAGCCAGAATGATTCAGATGTGGAGAGCTCCCTCTCGTATCAGCAATTTCCCACATCACTACTTGCTCAAGATGATGATGATGATACCACCATGGTGTCAAGTTTTGATGCAATTGTCGCGGAGATTGTGATAAAAAATGTGGAATGCGATATCCTACTTCATGAGGTCAATGCATCGGAGAGGCAACAAAATGAATCATCGAGGAAGATAGAATTGCAGAAGAGCTTGCTTGAGGTTTTGGAGTCTGAAAGGCTCATACTACTGAATGAGAATGCTAAATTGGGTTACAGAGTGGGTGCATTGATGGAAGAGAACAAAGCGCTTGCCTCCGAGTCTCTGTTCATGAGGAGGAAGGCCGGTGAGCTAGCTAGGTATTTGCTCCAAATGAGAGAGGACCGCAGGGTCAGCATGCTCAGCCGTAAGATAGAGGACCTTCAGGGACAGATTTATGGGTTGGAGAAGCGGAACAAGGAGTACTACCAGCAACTTGTCAACAATGATCACTCACAACTAGGATCACTTGAAGAAGAGAAGAATAGTAGCAACAACAAGAAGAAGACTCGTGGTAGAAGTAGTAATGAGGTGGATTTGCACGTTTGCTTTCAAATAGGAAAGATGAAGAGGAGAGGTGGTACTGGGACGAGGACTGGTACGAGGGGTACTGGTACTGACAAGAAAGGTTCTAGTTGGTGGGGAAAGGTCAAGAACATAGACTTGTTTCTATGTGGACTTAACCCAACTACTACTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KIP1

Protein Analysis

357

Amino Acids

40.9

Weight (kDa)

5.65

Isoelectric Point (pI)

57.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KIP1 PF07765 26 - 64 1.2e-08 KIP1-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 722
AccI GTMKAC 1 cut(s) 253
AccII CGCG 2 cut(s) 98, 440
AciI CCGC 4 cut(s) 98, 440, 718, 784
AclWI GGATC 1 cut(s) 844
AcuI CTGAAG 2 cut(s) 129, 740
AfaI GTAC 7 cut(s) 58, 161, 797, 955, 973, 982, 988
AfeI AGCGCT 1 cut(s) 642
AgsI TTSAA 5 cut(s) 152, 197, 281, 845, 926
AhlI ACTAGT 1 cut(s) 215
AjuI GAANNNNNNNTTGG 2 cut(s) 584, 616
AleI CACNNNNGTG 1 cut(s) 413
AluBI AGCT 7 cut(s) 107, 113, 136, 348, 546, 685, 689
AluI AGCT 7 cut(s) 107, 113, 136, 348, 546, 685, 689
Alw21I GWGCWC 1 cut(s) 350
Alw26I GTCTC 2 cut(s) 311, 660
AlwI GGATC 1 cut(s) 844
Aor51HI AGCGCT 1 cut(s) 642
AoxI GGCC 1 cut(s) 675
ApeKI GCWGC 1 cut(s) 136
AspLEI GCGC 1 cut(s) 643
AspS9I GGNCC 2 cut(s) 715, 751
AsuHPI GGTGA 1 cut(s) 692
AsuNHI GCTAGC 3 cut(s) 31, 139, 685
AvaII GGWCC 2 cut(s) 715, 751
BanII GRGCYC 1 cut(s) 350
BauI CACGAG 1 cut(s) 882
BbsI GAAGAC 1 cut(s) 884
Bbv12I GWGCWC 1 cut(s) 350
BbvCI CCTCAGC 1 cut(s) 132
BbvI GCAGC 1 cut(s) 123
BccI CCATC 1 cut(s) 619
BceAI ACGGC 1 cut(s) 723
BclI TGATCA 1 cut(s) 820
BcoDI GTCTC 2 cut(s) 311, 660
BcuI ACTAGT 1 cut(s) 215
BfaI CTAG 8 cut(s) 32, 140, 216, 321, 686, 690, 833, 1005
BfoI RGCGCY 1 cut(s) 644
BisI GCNGC 1 cut(s) 137
BlpI GCTNAGC 1 cut(s) 734
BlsI GCNGC 1 cut(s) 138
BmcAI AGTACT 2 cut(s) 58, 797
Bme18I GGWCC 2 cut(s) 715, 751
BmgT120I GGNCC 2 cut(s) 715, 751
BmrI ACTGGG 1 cut(s) 966
BmsI GCATC 3 cut(s) 18, 418, 503
BmtI GCTAGC 3 cut(s) 35, 143, 689
BmuI ACTGGG 1 cut(s) 966
BpiI GAAGAC 1 cut(s) 884
Bpu10I CCTNAGC 1 cut(s) 132
Bpu1102I GCTNAGC 1 cut(s) 734
BpuEI CTTGAG 3 cut(s) 54, 372, 572
BsaJI CCNNGG 1 cut(s) 411
BsaXI ACNNNNNCTCC 4 cut(s) 49, 79, 937, 967
Bse118I RCCGGY 1 cut(s) 677
Bse1I ACTGG 3 cut(s) 961, 973, 988
BseDI CCNNGG 1 cut(s) 411
BseGI GGATG 2 cut(s) 27, 241
BseMII CTCAG 3 cut(s) 146, 212, 748
BseNI ACTGG 3 cut(s) 961, 973, 988
BseRI GAGGAG 4 cut(s) 57, 237, 682, 958
BseXI GCAGC 1 cut(s) 123
Bsh1236I CGCG 2 cut(s) 98, 440
BshFI GGCC 1 cut(s) 677
BsiHKAI GWGCWC 1 cut(s) 350
BsiSI CCGG 1 cut(s) 678
BslFI GGGAC 3 cut(s) 101, 774, 973
BsmAI GTCTC 2 cut(s) 311, 660
BsmFI GGGAC 3 cut(s) 101, 774, 973
BsmI GAATGC 2 cut(s) 470, 598
BsnI GGCC 1 cut(s) 677
Bsp1286I GDGCHC 1 cut(s) 350
Bsp1407I TGTACA 1 cut(s) 159
Bsp143I GATC 4 cut(s) 73, 307, 820, 836
Bsp1720I GCTNAGC 1 cut(s) 734
Bsp19I CCATGG 1 cut(s) 411
BspACI CCGC 4 cut(s) 98, 440, 718, 784
BspANI GGCC 1 cut(s) 677
BspCNI CTCAG 3 cut(s) 145, 213, 747
BspFNI CGCG 2 cut(s) 98, 440
BspHI TCATGA 2 cut(s) 481, 663
BspOI GCTAGC 3 cut(s) 35, 143, 689
BspPI GGATC 1 cut(s) 844
BspQI GCTCTTC 1 cut(s) 536
BsrFI RCCGGY 1 cut(s) 677
BsrGI TGTACA 1 cut(s) 159
BsrI ACTGG 3 cut(s) 961, 973, 988
BssAI RCCGGY 1 cut(s) 677
BssECI CCNNGG 1 cut(s) 411
BssMI GATC 4 cut(s) 73, 307, 820, 836
BssSI CACGAG 1 cut(s) 882
BssT1I CCWWGG 1 cut(s) 411
Bst2BI CACGAG 1 cut(s) 882
Bst4CI ACNGT 3 cut(s) 44, 50, 188
Bst6I CTCTTC 5 cut(s) 9, 536, 624, 843, 935
BstAUI TGTACA 1 cut(s) 159
BstC8I GCNNGC 7 cut(s) 33, 105, 141, 548, 645, 687, 731
BstDEI CTNAG 3 cut(s) 132, 221, 734
BstDSI CCRYGG 1 cut(s) 411
BstF5I GGATG 2 cut(s) 27, 241
BstFNI CGCG 2 cut(s) 98, 440
BstH2I RGCGCY 1 cut(s) 644
BstHHI GCGC 1 cut(s) 643
BstKTI GATC 4 cut(s) 76, 310, 823, 839
BstMAI GTCTC 2 cut(s) 311, 660
BstMBI GATC 4 cut(s) 73, 307, 820, 836
BstMWI GCNNNNNNNGC 4 cut(s) 104, 437, 726, 735
BstNSI RCATGY 1 cut(s) 733
BstUI CGCG 2 cut(s) 98, 440
BstV1I GCAGC 1 cut(s) 123
BstV2I GAAGAC 1 cut(s) 884
BsuRI GGCC 1 cut(s) 677
BtgI CCRYGG 1 cut(s) 411
BtsCI GGATG 2 cut(s) 27, 241
Cac8I GCNNGC 7 cut(s) 33, 105, 141, 548, 645, 687, 731
CciI TCATGA 2 cut(s) 481, 663
CfoI GCGC 1 cut(s) 643
Cfr10I RCCGGY 1 cut(s) 677
Cfr13I GGNCC 2 cut(s) 715, 751
Csp6I GTAC 7 cut(s) 57, 160, 796, 954, 972, 981, 987
CviAII CATG 4 cut(s) 412, 482, 664, 730
CviQI GTAC 7 cut(s) 57, 160, 796, 954, 972, 981, 987
DdeI CTNAG 3 cut(s) 132, 221, 734
DpnI GATC 4 cut(s) 75, 309, 822, 838
DpnII GATC 4 cut(s) 73, 307, 820, 836
DrdI GACNNNNNNGTC 1 cut(s) 722
DseDI GACNNNNNNGTC 1 cut(s) 722
Eam1104I CTCTTC 5 cut(s) 9, 536, 624, 843, 935
EarI CTCTTC 5 cut(s) 9, 536, 624, 843, 935
Ecl136II GAGCTC 1 cut(s) 348
Eco130I CCWWGG 1 cut(s) 411
Eco24I GRGCYC 1 cut(s) 350
Eco32I GATATC 1 cut(s) 472
Eco47I GGWCC 2 cut(s) 715, 751
Eco47III AGCGCT 1 cut(s) 642
Eco53kI GAGCTC 1 cut(s) 348
Eco57I CTGAAG 2 cut(s) 129, 740
EcoICRI GAGCTC 1 cut(s) 348
EcoO109I RGGNCCY 1 cut(s) 751
EcoRV GATATC 1 cut(s) 472
EcoT14I CCWWGG 1 cut(s) 411
EcoT22I ATGCAT 1 cut(s) 496
EcoT38I GRGCYC 1 cut(s) 350
ErhI CCWWGG 1 cut(s) 411
FaeI CATG 4 cut(s) 415, 485, 667, 733
FaqI GGGAC 3 cut(s) 101, 774, 973
FatI CATG 4 cut(s) 411, 481, 663, 729
FbaI TGATCA 1 cut(s) 820
FblI GTMKAC 1 cut(s) 253
Fnu4HI GCNGC 1 cut(s) 137
FokI GGATG 2 cut(s) 34, 228
FriOI GRGCYC 1 cut(s) 350
Fsp4HI GCNGC 1 cut(s) 137
FspBI CTAG 8 cut(s) 32, 140, 216, 321, 686, 690, 833, 1005
GlaI GCGC 1 cut(s) 642
GluI GCNGC 1 cut(s) 137
HaeII RGCGCY 1 cut(s) 644
HaeIII GGCC 1 cut(s) 677
HapII CCGG 1 cut(s) 678
HhaI GCGC 1 cut(s) 643
Hin1II CATG 4 cut(s) 415, 485, 667, 733
Hin6I GCGC 1 cut(s) 641
HinP1I GCGC 1 cut(s) 641
HincII GTYRAC 2 cut(s) 254, 814
HindII GTYRAC 2 cut(s) 254, 814
HindIII AAGCTT 1 cut(s) 111
HinfI GANTC 7 cut(s) 223, 229, 332, 515, 563, 653, 880
HpaII CCGG 1 cut(s) 678
HphI GGTGA 1 cut(s) 692
Hpy166II GTNNAC 3 cut(s) 254, 814, 1049
Hpy188I TCNGA 9 cut(s) 7, 184, 222, 228, 234, 337, 499, 568, 652
Hpy188III TCNNGA 7 cut(s) 71, 77, 152, 389, 482, 664, 1024
Hpy8I GTNNAC 3 cut(s) 254, 814, 1049
Hpy99I CGWCG 1 cut(s) 255
HpyAV CCTTC 3 cut(s) 103, 667, 764
HpyCH4III ACNGT 3 cut(s) 44, 50, 188
HpyCH4IV ACGT 1 cut(s) 915
HpyCH4V TGCA 5 cut(s) 431, 494, 538, 620, 913
HpyF10VI GCNNNNNNNGC 4 cut(s) 104, 437, 726, 735
HpyF3I CTNAG 3 cut(s) 132, 221, 734
HpySE526I ACGT 1 cut(s) 915
Hsp92II CATG 4 cut(s) 415, 485, 667, 733
HspAI GCGC 1 cut(s) 641
Ksp22I TGATCA 1 cut(s) 820
Kzo9I GATC 4 cut(s) 73, 307, 820, 836
LguI GCTCTTC 1 cut(s) 536
LmnI GCTCC 3 cut(s) 100, 353, 705
LpnPI CCDG 9 cut(s) 314, 338, 691, 706, 743, 815, 942, 954, 969
Lsp1109I GCAGC 1 cut(s) 123
LweI GCATC 3 cut(s) 18, 418, 503
MaeI CTAG 8 cut(s) 32, 140, 216, 321, 686, 690, 833, 1005
MaeII ACGT 1 cut(s) 915
MaeIII GTNAC 3 cut(s) 44, 188, 605
MalI GATC 4 cut(s) 75, 309, 822, 838
MboI GATC 4 cut(s) 73, 307, 820, 836
MfeI CAATTG 1 cut(s) 432
MhlI GDGCHC 1 cut(s) 350
MluCI AATT 5 cut(s) 163, 365, 432, 533, 599
MlyI GAGTC 5 cut(s) 232, 238, 572, 662, 874
MmeI TCCRAC 1 cut(s) 756
Mph1103I ATGCAT 1 cut(s) 496
MseI TTAA 2 cut(s) 39, 1053
MslI CAYNNNNRTG 1 cut(s) 413
MspA1I CMGCKG 1 cut(s) 136
MspI CCGG 1 cut(s) 678
MunI CAATTG 1 cut(s) 432
Mva1269I GAATGC 2 cut(s) 470, 598
MvnI CGCG 2 cut(s) 98, 440
MwoI GCNNNNNNNGC 4 cut(s) 104, 437, 726, 735
NcoI CCATGG 1 cut(s) 411
NdeII GATC 4 cut(s) 73, 307, 820, 836
NheI GCTAGC 3 cut(s) 31, 139, 685
NlaIII CATG 4 cut(s) 415, 485, 667, 733
NsiI ATGCAT 1 cut(s) 496
NspI RCATGY 1 cut(s) 733
OliI CACNNNNGTG 1 cut(s) 413
PaeI GCATGC 1 cut(s) 733
PagI TCATGA 2 cut(s) 481, 663
PciSI GCTCTTC 1 cut(s) 536
PctI GAATGC 2 cut(s) 470, 598
PfeI GAWTC 2 cut(s) 332, 515
PkrI GCNGC 1 cut(s) 138
PleI GAGTC 5 cut(s) 231, 237, 571, 661, 874
PpsI GAGTC 5 cut(s) 231, 237, 571, 661, 874
PpuMI RGGWCCY 1 cut(s) 751
Psp124BI GAGCTC 1 cut(s) 350
Psp5II RGGWCCY 1 cut(s) 751
PspPI GGNCC 2 cut(s) 715, 751
PspPPI RGGWCCY 1 cut(s) 751
PsrI GAACNNNNNNTAC 2 cut(s) 779, 811
PvuII CAGCTG 1 cut(s) 136
RsaI GTAC 7 cut(s) 58, 161, 797, 955, 973, 982, 988
RsaNI GTAC 7 cut(s) 57, 160, 796, 954, 972, 981, 987
RseI CAYNNNNRTG 1 cut(s) 413
SacI GAGCTC 1 cut(s) 350
SalI GTCGAC 1 cut(s) 252
SapI GCTCTTC 1 cut(s) 536
SaqAI TTAA 2 cut(s) 39, 1053
SatI GCNGC 1 cut(s) 137
Sau3AI GATC 4 cut(s) 73, 307, 820, 836
Sau96I GGNCC 2 cut(s) 715, 751
ScaI AGTACT 2 cut(s) 58, 797
SchI GAGTC 5 cut(s) 232, 238, 572, 662, 874
SduI GDGCHC 1 cut(s) 350
SfaNI GCATC 3 cut(s) 18, 418, 503
SinI GGWCC 2 cut(s) 715, 751
SmiMI CAYNNNNRTG 1 cut(s) 413
SmlI CTYRAG 3 cut(s) 69, 387, 551
SmoI CTYRAG 3 cut(s) 69, 387, 551
SpeI ACTAGT 1 cut(s) 215
SphI GCATGC 1 cut(s) 733
Sse9I AATT 5 cut(s) 163, 365, 432, 533, 599
SsiI CCGC 4 cut(s) 98, 440, 718, 784
SspMI CTAG 8 cut(s) 32, 140, 216, 321, 686, 690, 833, 1005
SstI GAGCTC 1 cut(s) 350
StyI CCWWGG 1 cut(s) 411
TaaI ACNGT 3 cut(s) 44, 50, 188
TaiI ACGT 1 cut(s) 918
TaqI TCGA 2 cut(s) 253, 521
TasI AATT 5 cut(s) 163, 365, 432, 533, 599
TatI WGTACW 3 cut(s) 56, 159, 795
TfiI GAWTC 2 cut(s) 332, 515
Tru1I TTAA 2 cut(s) 39, 1053
Tru9I TTAA 2 cut(s) 39, 1053
TseI GCWGC 1 cut(s) 136
TspDTI ATGAA 6 cut(s) 38, 230, 470, 528, 652, 953
VpaK11BI GGWCC 2 cut(s) 715, 751
XceI RCATGY 1 cut(s) 733
XmiI GTMKAC 1 cut(s) 253
XspI CTAG 8 cut(s) 32, 140, 216, 321, 686, 690, 833, 1005
ZrmI AGTACT 2 cut(s) 58, 797
Zsp2I ATGCAT 1 cut(s) 496
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.