Rw7G000380

KIP1-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0002133
Physical Location & Seq
Forward (+)
321511 .. 324726
3216 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G000380.1

Sequence Viewer

Length: 1245 bp
ATGGAGAAACCGACGACACCACCACCACCATCATCAGCTTCTTCTGTTCAAATTCATCAGGAGTCAGTTCTGACTAGTCCAACGTTGTCAAGCACAAGGAAGATGAGCTTAAGCACCACCCCGACCACCATGGCCACCTCCGCCAAACCGACCTGGCTCCTCTCCAACCTCGCCGATGTGGAAGAGAGGATGAAGATGCTAGCATTTAACAGTAACAGTAAAAGTACTAAAACTCCTCAAGATCAAGACAATGGGGACACCTTCGCGGAGCGAGCTGAAGCTTACTACAAAACACGCCCTCAGCTGCTATCCCTACTTCAAGACTTGTACAATTCCTATCTCACTCTCTCTGACCGTTACATTCAAACAATTGCCAAAACTACTAGTCTGAGTCAGAGTCAGATTTTTCATCCTCCTCGTCGACAATCTTCTCAAACCTCAACCATTGAATACTATGATTACTATGACCAGCAAGATCAATATGAGACTAGCCAGAATGATTCAGATGTGGAGAGCTCCCTCTCGTATCAGCAATTTCCCACATCACTACTTGCTCAAGATGATGATGATGATGATACCACCATGGTGTCAAGTTTTGACGCAATTGTCGCGGAGATTGTGATAAAAAATGTGGAATGCGATATCCTACTTCATGAGGTCAATGCATCGGAGAGGCAACAAAATGAATCATCGAGGAAGATAGAGTTGCAGAAGAGCTTGCTTGAGGTTTTGGAGTCTGAAAGGCTCATACTACTGAATGAGAATGCTAAATTGGGTTACAGAGTGGGTGCATTGATGGAAGAGAACAAAGCGCTTGCCTCCGAGTCTCTGTTCATGAGGAGGAAGGCCGGTGAGCTAGCTAGGTATTTGCTCCAAATGAGAGAGGACCGCAGGGTCAGCATGCTCAGCCGTAAGATAGAGGACCTTCAGGGACAGATTTATGGGTTGGAGAAGCGGAACAAGGAGTACTACCAGCAACTTGTCAACAATGATCACTCACAACCAGGATCACTTGAAGAAGAGAAGAATAGTAGCAACAACAAGAAGAAGACTCGTGGTAGAAGTAGTAATGAGGTGGATTTGCACGTTTGCTTTCAAATAGGAAAGATGAAGAGGAGAGGTGGTACTGGGACGAGGACTGGTACGAGGGGTACTGGCACTGACAAGAAAGGTTCTAGTTGGTGGGGAAAGGTCAAGAACATAGACTTGTTTCTATGTGGACTTAACCCAACTTCTACTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KIP1

Protein Analysis

414

Amino Acids

46.88

Weight (kDa)

5.91

Isoelectric Point (pI)

57.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KIP1 PF07765 47 - 120 2.5e-10 KIP1-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 605, 893
AccI GTMKAC 1 cut(s) 421
AccII CGCG 2 cut(s) 266, 611
AciI CCGC 5 cut(s) 141, 266, 611, 889, 955
AclI AACGTT 1 cut(s) 83
AclWI GGATC 1 cut(s) 1015
AcoI YGGCCR 1 cut(s) 132
AcsI RAATTY 1 cut(s) 51
AcuI CTGAAG 2 cut(s) 297, 911
AfaI GTAC 6 cut(s) 226, 329, 968, 1126, 1144, 1153
AfeI AGCGCT 1 cut(s) 813
AflII CTTAAG 1 cut(s) 109
AgsI TTSAA 6 cut(s) 50, 320, 365, 449, 1016, 1097
AhlI ACTAGT 2 cut(s) 74, 383
AjnI CCWGG 2 cut(s) 152, 1003
AjuI GAANNNNNNNTTGG 2 cut(s) 755, 787
AleI CACNNNNGTG 1 cut(s) 584
AluBI AGCT 9 cut(s) 38, 108, 275, 281, 304, 516, 717, 856, 860
AluI AGCT 9 cut(s) 38, 108, 275, 281, 304, 516, 717, 856, 860
Alw21I GWGCWC 1 cut(s) 518
Alw26I GTCTC 2 cut(s) 479, 831
AlwI GGATC 1 cut(s) 1015
Aor51HI AGCGCT 1 cut(s) 813
AoxI GGCC 2 cut(s) 132, 846
ApeKI GCWGC 1 cut(s) 304
ApoI RAATTY 1 cut(s) 51
AspLEI GCGC 1 cut(s) 814
AspS9I GGNCC 2 cut(s) 886, 922
AsuHPI GGTGA 1 cut(s) 863
AsuNHI GCTAGC 2 cut(s) 199, 856
AvaII GGWCC 2 cut(s) 886, 922
BalI TGGCCA 1 cut(s) 134
BanII GRGCYC 1 cut(s) 518
BauI CACGAG 1 cut(s) 1053
BbsI GAAGAC 1 cut(s) 1055
Bbv12I GWGCWC 1 cut(s) 518
BbvCI CCTCAGC 1 cut(s) 300
BbvI GCAGC 1 cut(s) 291
BccI CCATC 2 cut(s) 37, 790
BceAI ACGGC 1 cut(s) 894
BciT130I CCWGG 2 cut(s) 154, 1005
BclI TGATCA 1 cut(s) 991
BcoDI GTCTC 2 cut(s) 479, 831
BcuI ACTAGT 2 cut(s) 74, 383
BfaI CTAG 7 cut(s) 75, 200, 384, 489, 857, 861, 1176
BfoI RGCGCY 1 cut(s) 815
BfrI CTTAAG 1 cut(s) 109
BisI GCNGC 1 cut(s) 305
BlpI GCTNAGC 1 cut(s) 905
BlsI GCNGC 1 cut(s) 306
BmcAI AGTACT 2 cut(s) 226, 968
Bme1390I CCNGG 2 cut(s) 154, 1005
Bme18I GGWCC 2 cut(s) 886, 922
BmgT120I GGNCC 2 cut(s) 886, 922
BmiI GGNNCC 1 cut(s) 158
BmrFI CCNGG 2 cut(s) 154, 1005
BmrI ACTGGG 1 cut(s) 1137
BmsI GCATC 2 cut(s) 186, 674
BmtI GCTAGC 2 cut(s) 203, 860
BmuI ACTGGG 1 cut(s) 1137
BpiI GAAGAC 1 cut(s) 1055
Bpu10I CCTNAGC 1 cut(s) 300
Bpu1102I GCTNAGC 1 cut(s) 905
BpuEI CTTGAG 3 cut(s) 222, 540, 743
BsaJI CCNNGG 2 cut(s) 129, 582
BsaXI ACNNNNNCTCC 4 cut(s) 217, 247, 1108, 1138
Bse118I RCCGGY 1 cut(s) 848
Bse1I ACTGG 3 cut(s) 1132, 1144, 1159
BseBI CCWGG 2 cut(s) 154, 1005
BseDI CCNNGG 2 cut(s) 129, 582
BseGI GGATG 2 cut(s) 195, 409
BseMII CTCAG 3 cut(s) 314, 380, 919
BseNI ACTGG 3 cut(s) 1132, 1144, 1159
BseRI GAGGAG 5 cut(s) 149, 225, 405, 853, 1129
BseXI GCAGC 1 cut(s) 291
Bsh1236I CGCG 2 cut(s) 266, 611
BshFI GGCC 2 cut(s) 134, 848
BsiHKAI GWGCWC 1 cut(s) 518
BsiSI CCGG 1 cut(s) 849
BslFI GGGAC 3 cut(s) 269, 945, 1144
BsmAI GTCTC 2 cut(s) 479, 831
BsmFI GGGAC 3 cut(s) 269, 945, 1144
BsmI GAATGC 2 cut(s) 641, 769
BsnI GGCC 2 cut(s) 134, 848
Bsp1286I GDGCHC 1 cut(s) 518
Bsp1407I TGTACA 1 cut(s) 327
Bsp143I GATC 4 cut(s) 241, 475, 991, 1007
Bsp1720I GCTNAGC 1 cut(s) 905
Bsp19I CCATGG 2 cut(s) 129, 582
BspACI CCGC 5 cut(s) 141, 266, 611, 889, 955
BspANI GGCC 2 cut(s) 134, 848
BspCNI CTCAG 3 cut(s) 313, 381, 918
BspFNI CGCG 2 cut(s) 266, 611
BspHI TCATGA 2 cut(s) 652, 834
BspLI GGNNCC 1 cut(s) 158
BspOI GCTAGC 2 cut(s) 203, 860
BspPI GGATC 1 cut(s) 1015
BspQI GCTCTTC 1 cut(s) 707
BspTI CTTAAG 1 cut(s) 109
BsrFI RCCGGY 1 cut(s) 848
BsrGI TGTACA 1 cut(s) 327
BsrI ACTGG 3 cut(s) 1132, 1144, 1159
BssAI RCCGGY 1 cut(s) 848
BssECI CCNNGG 2 cut(s) 129, 582
BssMI GATC 4 cut(s) 241, 475, 991, 1007
BssSI CACGAG 1 cut(s) 1053
BssT1I CCWWGG 2 cut(s) 129, 582
Bst2BI CACGAG 1 cut(s) 1053
Bst2UI CCWGG 2 cut(s) 154, 1005
Bst4CI ACNGT 3 cut(s) 212, 218, 356
Bst6I CTCTTC 5 cut(s) 177, 707, 795, 1014, 1106
BstAFI CTTAAG 1 cut(s) 109
BstAUI TGTACA 1 cut(s) 327
BstC8I GCNNGC 6 cut(s) 201, 273, 719, 816, 858, 902
BstDEI CTNAG 3 cut(s) 300, 389, 905
BstDSI CCRYGG 2 cut(s) 129, 582
BstF5I GGATG 2 cut(s) 195, 409
BstFNI CGCG 2 cut(s) 266, 611
BstH2I RGCGCY 1 cut(s) 815
BstHHI GCGC 1 cut(s) 814
BstKTI GATC 4 cut(s) 244, 478, 994, 1010
BstMAI GTCTC 2 cut(s) 479, 831
BstMBI GATC 4 cut(s) 241, 475, 991, 1007
BstMWI GCNNNNNNNGC 5 cut(s) 140, 272, 608, 897, 906
BstNI CCWGG 2 cut(s) 154, 1005
BstNSI RCATGY 1 cut(s) 904
BstSCI CCNGG 2 cut(s) 152, 1003
BstUI CGCG 2 cut(s) 266, 611
BstV1I GCAGC 1 cut(s) 291
BstV2I GAAGAC 1 cut(s) 1055
BsuRI GGCC 2 cut(s) 134, 848
BtgI CCRYGG 2 cut(s) 129, 582
BtsCI GGATG 2 cut(s) 195, 409
BtsIMutI CAGTG 1 cut(s) 1158
Cac8I GCNNGC 6 cut(s) 201, 273, 719, 816, 858, 902
CciI TCATGA 2 cut(s) 652, 834
CfoI GCGC 1 cut(s) 814
Cfr10I RCCGGY 1 cut(s) 848
Cfr13I GGNCC 2 cut(s) 886, 922
CseI GACGC 1 cut(s) 608
Csp6I GTAC 6 cut(s) 225, 328, 967, 1125, 1143, 1152
CviAII CATG 5 cut(s) 130, 583, 653, 835, 901
CviQI GTAC 6 cut(s) 225, 328, 967, 1125, 1143, 1152
DdeI CTNAG 3 cut(s) 300, 389, 905
DpnI GATC 4 cut(s) 243, 477, 993, 1009
DpnII GATC 4 cut(s) 241, 475, 991, 1007
DrdI GACNNNNNNGTC 2 cut(s) 605, 893
DseDI GACNNNNNNGTC 2 cut(s) 605, 893
EaeI YGGCCR 1 cut(s) 132
Eam1104I CTCTTC 5 cut(s) 177, 707, 795, 1014, 1106
EarI CTCTTC 5 cut(s) 177, 707, 795, 1014, 1106
EciI GGCGGA 1 cut(s) 130
Ecl136II GAGCTC 1 cut(s) 516
Eco130I CCWWGG 2 cut(s) 129, 582
Eco24I GRGCYC 1 cut(s) 518
Eco32I GATATC 1 cut(s) 643
Eco47I GGWCC 2 cut(s) 886, 922
Eco47III AGCGCT 1 cut(s) 813
Eco53kI GAGCTC 1 cut(s) 516
Eco57I CTGAAG 2 cut(s) 297, 911
EcoICRI GAGCTC 1 cut(s) 516
EcoO109I RGGNCCY 1 cut(s) 922
EcoRII CCWGG 2 cut(s) 152, 1003
EcoRV GATATC 1 cut(s) 643
EcoT14I CCWWGG 2 cut(s) 129, 582
EcoT22I ATGCAT 1 cut(s) 667
EcoT38I GRGCYC 1 cut(s) 518
ErhI CCWWGG 2 cut(s) 129, 582
FaeI CATG 5 cut(s) 133, 586, 656, 838, 904
FalI AAGNNNNNCTT 2 cut(s) 92, 124
FaqI GGGAC 3 cut(s) 269, 945, 1144
FatI CATG 5 cut(s) 129, 582, 652, 834, 900
FbaI TGATCA 1 cut(s) 991
FblI GTMKAC 1 cut(s) 421
Fnu4HI GCNGC 1 cut(s) 305
FokI GGATG 2 cut(s) 202, 396
FriOI GRGCYC 1 cut(s) 518
Fsp4HI GCNGC 1 cut(s) 305
FspBI CTAG 7 cut(s) 75, 200, 384, 489, 857, 861, 1176
GlaI GCGC 1 cut(s) 813
GluI GCNGC 1 cut(s) 305
HaeII RGCGCY 1 cut(s) 815
HaeIII GGCC 2 cut(s) 134, 848
HapII CCGG 1 cut(s) 849
HgaI GACGC 1 cut(s) 608
HhaI GCGC 1 cut(s) 814
Hin1II CATG 5 cut(s) 133, 586, 656, 838, 904
Hin6I GCGC 1 cut(s) 812
HinP1I GCGC 1 cut(s) 812
HincII GTYRAC 2 cut(s) 422, 985
HindII GTYRAC 2 cut(s) 422, 985
HindIII AAGCTT 1 cut(s) 279
HinfI GANTC 8 cut(s) 62, 391, 397, 500, 686, 734, 824, 1051
HpaII CCGG 1 cut(s) 849
HphI GGTGA 1 cut(s) 863
Hpy166II GTNNAC 3 cut(s) 422, 985, 1220
Hpy188I TCNGA 9 cut(s) 72, 352, 390, 396, 402, 505, 670, 739, 823
Hpy188III TCNNGA 8 cut(s) 59, 239, 245, 320, 557, 653, 835, 1195
Hpy8I GTNNAC 3 cut(s) 422, 985, 1220
Hpy99I CGWCG 2 cut(s) 16, 423
HpyAV CCTTC 3 cut(s) 271, 838, 935
HpyCH4III ACNGT 3 cut(s) 212, 218, 356
HpyCH4IV ACGT 2 cut(s) 83, 1086
HpyCH4V TGCA 4 cut(s) 665, 709, 791, 1084
HpyF10VI GCNNNNNNNGC 5 cut(s) 140, 272, 608, 897, 906
HpyF3I CTNAG 3 cut(s) 300, 389, 905
HpySE526I ACGT 2 cut(s) 83, 1086
Hsp92II CATG 5 cut(s) 133, 586, 656, 838, 904
HspAI GCGC 1 cut(s) 812
Ksp22I TGATCA 1 cut(s) 991
Kzo9I GATC 4 cut(s) 241, 475, 991, 1007
LguI GCTCTTC 1 cut(s) 707
LmnI GCTCC 4 cut(s) 162, 268, 521, 876
Lsp1109I GCAGC 1 cut(s) 291
LweI GCATC 2 cut(s) 186, 674
MaeI CTAG 7 cut(s) 75, 200, 384, 489, 857, 861, 1176
MaeII ACGT 2 cut(s) 83, 1086
MaeIII GTNAC 3 cut(s) 212, 356, 776
MalI GATC 4 cut(s) 243, 477, 993, 1009
MboI GATC 4 cut(s) 241, 475, 991, 1007
MfeI CAATTG 2 cut(s) 369, 603
MhlI GDGCHC 1 cut(s) 518
MlsI TGGCCA 1 cut(s) 134
MluCI AATT 6 cut(s) 51, 331, 369, 533, 603, 770
MluNI TGGCCA 1 cut(s) 134
MlyI GAGTC 6 cut(s) 71, 400, 406, 743, 833, 1045
MmeI TCCRAC 3 cut(s) 104, 189, 927
Mox20I TGGCCA 1 cut(s) 134
Mph1103I ATGCAT 1 cut(s) 667
MscI TGGCCA 1 cut(s) 134
MseI TTAA 3 cut(s) 110, 207, 1224
MslI CAYNNNNRTG 1 cut(s) 584
Msp20I TGGCCA 1 cut(s) 134
MspA1I CMGCKG 1 cut(s) 304
MspCI CTTAAG 1 cut(s) 109
MspI CCGG 1 cut(s) 849
MspR9I CCNGG 2 cut(s) 154, 1005
MunI CAATTG 2 cut(s) 369, 603
Mva1269I GAATGC 2 cut(s) 641, 769
MvaI CCWGG 2 cut(s) 154, 1005
MvnI CGCG 2 cut(s) 266, 611
MwoI GCNNNNNNNGC 5 cut(s) 140, 272, 608, 897, 906
NcoI CCATGG 2 cut(s) 129, 582
NdeII GATC 4 cut(s) 241, 475, 991, 1007
NheI GCTAGC 2 cut(s) 199, 856
NlaIII CATG 5 cut(s) 133, 586, 656, 838, 904
NlaIV GGNNCC 1 cut(s) 158
NsiI ATGCAT 1 cut(s) 667
NspI RCATGY 1 cut(s) 904
OliI CACNNNNGTG 1 cut(s) 584
PaeI GCATGC 1 cut(s) 904
PagI TCATGA 2 cut(s) 652, 834
PciSI GCTCTTC 1 cut(s) 707
PctI GAATGC 2 cut(s) 641, 769
PfeI GAWTC 2 cut(s) 500, 686
PkrI GCNGC 1 cut(s) 306
PleI GAGTC 6 cut(s) 70, 399, 405, 742, 832, 1045
PpsI GAGTC 6 cut(s) 70, 399, 405, 742, 832, 1045
PpuMI RGGWCCY 1 cut(s) 922
Psp124BI GAGCTC 1 cut(s) 518
Psp1406I AACGTT 1 cut(s) 83
Psp5II RGGWCCY 1 cut(s) 922
Psp6I CCWGG 2 cut(s) 152, 1003
PspGI CCWGG 2 cut(s) 152, 1003
PspN4I GGNNCC 1 cut(s) 158
PspPI GGNCC 2 cut(s) 886, 922
PspPPI RGGWCCY 1 cut(s) 922
PsrI GAACNNNNNNTAC 2 cut(s) 950, 982
PvuII CAGCTG 1 cut(s) 304
RsaI GTAC 6 cut(s) 226, 329, 968, 1126, 1144, 1153
RsaNI GTAC 6 cut(s) 225, 328, 967, 1125, 1143, 1152
RseI CAYNNNNRTG 1 cut(s) 584
SacI GAGCTC 1 cut(s) 518
SalI GTCGAC 1 cut(s) 420
SapI GCTCTTC 1 cut(s) 707
SaqAI TTAA 3 cut(s) 110, 207, 1224
SatI GCNGC 1 cut(s) 305
Sau3AI GATC 4 cut(s) 241, 475, 991, 1007
Sau96I GGNCC 2 cut(s) 886, 922
ScaI AGTACT 2 cut(s) 226, 968
SchI GAGTC 6 cut(s) 71, 400, 406, 743, 833, 1045
ScrFI CCNGG 2 cut(s) 154, 1005
SduI GDGCHC 1 cut(s) 518
SfaNI GCATC 2 cut(s) 186, 674
SinI GGWCC 2 cut(s) 886, 922
SmiMI CAYNNNNRTG 1 cut(s) 584
SmlI CTYRAG 4 cut(s) 109, 237, 555, 722
SmoI CTYRAG 4 cut(s) 109, 237, 555, 722
SpeI ACTAGT 2 cut(s) 74, 383
SphI GCATGC 1 cut(s) 904
Sse9I AATT 6 cut(s) 51, 331, 369, 533, 603, 770
SsiI CCGC 5 cut(s) 141, 266, 611, 889, 955
SspMI CTAG 7 cut(s) 75, 200, 384, 489, 857, 861, 1176
SstI GAGCTC 1 cut(s) 518
StyD4I CCNGG 2 cut(s) 152, 1003
StyI CCWWGG 2 cut(s) 129, 582
TaaI ACNGT 3 cut(s) 212, 218, 356
TaiI ACGT 2 cut(s) 86, 1089
TaqI TCGA 2 cut(s) 421, 692
TasI AATT 6 cut(s) 51, 331, 369, 533, 603, 770
TatI WGTACW 3 cut(s) 224, 327, 966
TfiI GAWTC 2 cut(s) 500, 686
Tru1I TTAA 3 cut(s) 110, 207, 1224
Tru9I TTAA 3 cut(s) 110, 207, 1224
TscAI CASTG 1 cut(s) 1165
TseI GCWGC 1 cut(s) 304
TspDTI ATGAA 7 cut(s) 44, 206, 398, 641, 699, 823, 1124
TspRI CASTG 1 cut(s) 1165
Vha464I CTTAAG 1 cut(s) 109
VpaK11BI GGWCC 2 cut(s) 886, 922
XapI RAATTY 1 cut(s) 51
XceI RCATGY 1 cut(s) 904
XmiI GTMKAC 1 cut(s) 421
XspI CTAG 7 cut(s) 75, 200, 384, 489, 857, 861, 1176
ZrmI AGTACT 2 cut(s) 226, 968
Zsp2I ATGCAT 1 cut(s) 667
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.