Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0002133

Physical Location & Seq

Genomic Coordinates Forward (+)

316338 .. 317378

Gene Structure 1041 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G000370.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGGGGGATGTTTTGAAAAGAGCAAGATTGGAAACAGCAGTCTGGGCTGGAAAGCTGATACTGCTCTGTGTAGGAATAGTGTCCACAATGGTATTTTTCAAAGTGGTAATCATTCCTTACCTCCTTAATCTCACTCTTTCCACTCTTCCCCACCTCTGGACCTCAATCAGAAGCTACTGCCTATCTCCACTTTACATCTACATCATTCTCAATTTTATCATCATAATCATCGCTGCCTCCTCCACATTCCAAAATCAAAAGCAAAAGCACCCCTCATCTGTGCCCTCCTCCTACACCTCCATTAATAACCTAAACAATGCCAAGACCACTAGTACTGATCATGAAGATGACTGTTGTGCTGTTATTGATGGTACGGCAGAGTACAACAGCAACAAGATCGAAAGTAGTAGTCATTCCGAAAATGCAACTACTTCTCCTCTACCGTCTTTGCTTACTCATCAATTTTCAAATGAAATGATCAGCTGGCATGACATCCACATAGTACAACAAGCTTCCACAGAAGAAGAAGAATCCATTCGTACCAACCCTTCACCGGAGGAACCCTCCTCCTCGGAGGACTCTTGCTTGACGGAGAAGCCGGTCACCGAGGAAGAGGTGGAAGACAACACATTGGACACCACATGGAATGCCATTATGGAAAGGCAAGGCAAACCGATATGCAAGCATCTAAAAAAGAGTGAGACTTGGGACACGCCGCCTCGGACGACTGGCTTGGTGAGAAGTAGTATTGTTCCAGCCAGGGAGCTAGTTGAGGAGGAGCAGTTAGATGATCATCATCATGAGAACATCAACAACAACAATAATAATGTTGTTGATGATCGAGTGGCATGGGCTCGGAAAGAGTTGAAGAAGTCGGACACTTTTAGCGACAGGGTGTCCATGATAAGGGAGAAGTCCATGACTCAGGACGAATTGAACCAGAGGGCGGAGGCCTTCATCAACAAGATCAATAATCAGATAAGGCTTCAGAGGCTAGAATCTGATCAGCGTTCCAGGGACATGGTTGACCGTGGTCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4408 DUF761

Protein Analysis

346

Amino Acids

39.34

Weight (kDa)

5.22

Isoelectric Point (pI)

47.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4408	PF14364	50 - 83	3e-09	Domain of unknown function (DUF4408)
DUF761	PF05553	309 - 344	2.9e-11	Cotton fibre expressed protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002133)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48405 AT3G17680 AT3G17680 AT3G17680
fragaria_vesca	FvH4_5g18280 FvH4_5g18280 FvH4_5g18280 FvH4_5g18280 FvH4_5g18280 FvH4_5g18290
malus_domestica	MD06G1238400.v1.1 MD06G1238700.v1.1 MD14G1244700.v1.1 MD14G1244900.v1.1
prunus_persica	Prupe.5G242300_v2.0.a1 Prupe.5G242300_v2.0.a1 Prupe.5G242300_v2.0.a1 Prupe.5G242300_v2.0.a1 Prupe.5G242300_v2.0.a1 Prupe.5G242300_v2.0.a1 Prupe.5G242600_v2.0.a1
pyrus_communis	pycom06g21390 pycom06g21420 pycom14g20590
rosa_chinensis	RchiOBHm_Chr7g0177291 RchiOBHm_Chr7g0177301
rosa_laevigata	RLG00000005548
rosa_multiflora	Rmu_sc0005310.1_g000008
rosa_roxburghii	Rroxscaffold_3G00275960 Rroxscaffold_3G00275970
rosa_rugosa	Rorug06G0404500 Rorug06G0404600 Rorug06G0404700 Rorug06G0404800
rosa_samantha	Rh7AG004500 Rh7AG004600 Rh7BG004400 Rh7BG004500 Rh7CG004300 Rh7CG004400 Rh7DG004300 Rh7DG004400
rosa_wichuraiana	Rw7G000370 Rw7G000380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	716, 947
AcuI	CTGAAG	1 cut(s)	971
AfaI	GTAC	5 cut(s)	334, 373, 383, 504, 541
AfiI	CCNNNNNNNGG	4 cut(s)	156, 553, 906, 946
AgsI	TTSAA	5 cut(s)	16, 100, 468, 868, 937
AhdI	GACNNNNNGTC	1 cut(s)	895
AhlI	ACTAGT	1 cut(s)	329
AjnI	CCWGG	2 cut(s)	758, 1013
AluBI	AGCT	5 cut(s)	55, 174, 483, 512, 766
AluI	AGCT	5 cut(s)	55, 174, 483, 512, 766
Alw26I	GTCTC	1 cut(s)	695
AoxI	GGCC	1 cut(s)	951
ApeKI	GCWGC	1 cut(s)	233
AseI	ATTAAT	1 cut(s)	303
Asp700I	GAANNNNTTC	1 cut(s)	534
AspS9I	GGNCC	1 cut(s)	159
AsuHPI	GGTGA	3 cut(s)	543, 595, 748
AvaII	GGWCC	1 cut(s)	159
BaeGI	GKGCMC	1 cut(s)	285
BanII	GRGCYC	1 cut(s)	856
BarI	GAAGNNNNNNTAC	2 cut(s)	532, 564
BbsI	GAAGAC	1 cut(s)	627
BbvI	GCAGC	1 cut(s)	220
BccI	CCATC	1 cut(s)	362
BceAI	ACGGC	1 cut(s)	390
BcgI	CGANNNNNNTGC	2 cut(s)	379, 413
BciT130I	CCWGG	2 cut(s)	760, 1015
BclI	TGATCA	4 cut(s)	337, 477, 790, 1003
BcoDI	GTCTC	1 cut(s)	695
BcuI	ACTAGT	1 cut(s)	329
BfaI	CTAG	4 cut(s)	330, 767, 995, 1039
BisI	GCNGC	2 cut(s)	234, 716
BlsI	GCNGC	2 cut(s)	235, 717
BmcAI	AGTACT	1 cut(s)	334
Bme1390I	CCNGG	2 cut(s)	760, 1015
Bme18I	GGWCC	1 cut(s)	159
BmeRI	GACNNNNNGTC	1 cut(s)	895
BmgT120I	GGNCC	1 cut(s)	159
BmiI	GGNNCC	1 cut(s)	561
BmrFI	CCNGG	2 cut(s)	760, 1015
BmsI	GCATC	1 cut(s)	694
BoxI	GACNNNNGTC	1 cut(s)	1032
BpiI	GAAGAC	1 cut(s)	627
BplI	GAGNNNNNCTC	2 cut(s)	548, 580
BsaBI	GATNNNNATC	2 cut(s)	792, 795
BsaJI	CCNNGG	6 cut(s)	570, 606, 719, 759, 1014, 1030
BsaWI	WCCGGW	1 cut(s)	553
BsaXI	ACNNNNNCTCC	4 cut(s)	418, 448, 767, 797
Bsc4I	CCNNNNNNNGG	4 cut(s)	156, 553, 906, 946
Bse118I	RCCGGY	1 cut(s)	598
Bse1I	ACTGG	1 cut(s)	733
Bse8I	GATNNNNATC	2 cut(s)	792, 795
BseBI	CCWGG	2 cut(s)	760, 1015
BseDI	CCNNGG	6 cut(s)	570, 606, 719, 759, 1014, 1030
BseGI	GGATG	2 cut(s)	13, 492
BseJI	GATNNNNATC	2 cut(s)	792, 795
BseLI	CCNNNNNNNGG	4 cut(s)	156, 553, 906, 946
BseMII	CTCAG	1 cut(s)	938
BseNI	ACTGG	1 cut(s)	733
BseRI	GAGGAG	7 cut(s)	229, 277, 426, 556, 559, 788, 791
BseSI	GKGCMC	1 cut(s)	285
BseXI	GCAGC	1 cut(s)	220
BshFI	GGCC	1 cut(s)	953
BsiSI	CCGG	2 cut(s)	554, 599
BslFI	GGGAC	2 cut(s)	722, 1031
BslI	CCNNNNNNNGG	4 cut(s)	156, 553, 906, 946
BsmAI	GTCTC	1 cut(s)	695
BsmFI	GGGAC	2 cut(s)	722, 1031
BsmI	GAATGC	1 cut(s)	652
BsnI	GGCC	1 cut(s)	953
Bsp1286I	GDGCHC	2 cut(s)	285, 856
Bsp143I	GATC	7 cut(s)	337, 396, 477, 790, 838, 966, 1003
BspACI	CCGC	2 cut(s)	716, 947
BspANI	GGCC	1 cut(s)	953
BspCNI	CTCAG	1 cut(s)	937
BspHI	TCATGA	2 cut(s)	340, 799
BspLI	GGNNCC	1 cut(s)	561
BsrFI	RCCGGY	1 cut(s)	598
BsrI	ACTGG	1 cut(s)	733
BssAI	RCCGGY	1 cut(s)	598
BssECI	CCNNGG	6 cut(s)	570, 606, 719, 759, 1014, 1030
BssMI	GATC	7 cut(s)	337, 396, 477, 790, 838, 966, 1003
Bst2UI	CCWGG	2 cut(s)	760, 1015
Bst4CI	ACNGT	3 cut(s)	353, 444, 1031
Bst6I	CTCTTC	2 cut(s)	150, 606
BstC8I	GCNNGC	2 cut(s)	485, 683
BstDEI	CTNAG	1 cut(s)	924
BstDSI	CCRYGG	1 cut(s)	1030
BstEII	GGTNACC	1 cut(s)	601
BstF5I	GGATG	2 cut(s)	13, 492
BstKTI	GATC	7 cut(s)	340, 399, 480, 793, 841, 969, 1006
BstMAI	GTCTC	1 cut(s)	695
BstMBI	GATC	7 cut(s)	337, 396, 477, 790, 838, 966, 1003
BstMWI	GCNNNNNNNGC	3 cut(s)	44, 61, 991
BstNI	CCWGG	2 cut(s)	760, 1015
BstPAI	GACNNNNGTC	1 cut(s)	1032
BstPI	GGTNACC	1 cut(s)	601
BstSCI	CCNGG	2 cut(s)	758, 1013
BstSLI	GKGCMC	1 cut(s)	285
BstV1I	GCAGC	1 cut(s)	220
BstV2I	GAAGAC	1 cut(s)	627
BstXI	CCANNNNNNTGG	1 cut(s)	1021
BsuRI	GGCC	1 cut(s)	953
BtgI	CCRYGG	1 cut(s)	1030
BtgZI	GCGATG	1 cut(s)	214
BtsCI	GGATG	2 cut(s)	13, 492
Cac8I	GCNNGC	2 cut(s)	485, 683
CciI	TCATGA	2 cut(s)	340, 799
Cfr10I	RCCGGY	1 cut(s)	598
Cfr13I	GGNCC	1 cut(s)	159
Csp6I	GTAC	5 cut(s)	333, 372, 382, 503, 540
CviAII	CATG	8 cut(s)	341, 488, 642, 800, 849, 901, 919, 1021
CviQI	GTAC	5 cut(s)	333, 372, 382, 503, 540
DdeI	CTNAG	1 cut(s)	924
DpnI	GATC	7 cut(s)	339, 398, 479, 792, 840, 968, 1005
DpnII	GATC	7 cut(s)	337, 396, 477, 790, 838, 966, 1003
DriI	GACNNNNNGTC	1 cut(s)	895
Eam1104I	CTCTTC	2 cut(s)	150, 606
Eam1105I	GACNNNNNGTC	1 cut(s)	895
EarI	CTCTTC	2 cut(s)	150, 606
EciI	GGCGGA	1 cut(s)	962
Eco147I	AGGCCT	1 cut(s)	953
Eco24I	GRGCYC	1 cut(s)	856
Eco47I	GGWCC	1 cut(s)	159
Eco57I	CTGAAG	1 cut(s)	971
Eco91I	GGTNACC	1 cut(s)	601
EcoO65I	GGTNACC	1 cut(s)	601
EcoRII	CCWGG	2 cut(s)	758, 1013
EcoT38I	GRGCYC	1 cut(s)	856
FaeI	CATG	8 cut(s)	344, 491, 645, 803, 852, 904, 922, 1024
FaqI	GGGAC	2 cut(s)	722, 1031
FatI	CATG	8 cut(s)	340, 487, 641, 799, 848, 900, 918, 1020
FbaI	TGATCA	4 cut(s)	337, 477, 790, 1003
Fnu4HI	GCNGC	2 cut(s)	234, 716
FokI	GGATG	2 cut(s)	20, 479
FriOI	GRGCYC	1 cut(s)	856
Fsp4HI	GCNGC	2 cut(s)	234, 716
FspBI	CTAG	4 cut(s)	330, 767, 995, 1039
GluI	GCNGC	2 cut(s)	234, 716
HaeIII	GGCC	1 cut(s)	953
HapII	CCGG	2 cut(s)	554, 599
Hin1II	CATG	8 cut(s)	344, 491, 645, 803, 852, 904, 922, 1024
HincII	GTYRAC	1 cut(s)	1027
HindII	GTYRAC	1 cut(s)	1027
HindIII	AAGCTT	1 cut(s)	510
HinfI	GANTC	4 cut(s)	530, 578, 922, 998
HpaII	CCGG	2 cut(s)	554, 599
HphI	GGTGA	3 cut(s)	543, 595, 748
Hpy166II	GTNNAC	2 cut(s)	84, 1027
Hpy188I	TCNGA	9 cut(s)	170, 418, 574, 723, 858, 877, 978, 990, 1003
Hpy188III	TCNNGA	4 cut(s)	157, 341, 800, 926
Hpy8I	GTNNAC	2 cut(s)	84, 1027
HpyAV	CCTTC	2 cut(s)	558, 964
HpyCH4III	ACNGT	3 cut(s)	353, 444, 1031
HpyCH4V	TGCA	2 cut(s)	425, 681
HpyF10VI	GCNNNNNNNGC	3 cut(s)	44, 61, 991
HpyF3I	CTNAG	1 cut(s)	924
Hsp92II	CATG	8 cut(s)	344, 491, 645, 803, 852, 904, 922, 1024
Ksp22I	TGATCA	4 cut(s)	337, 477, 790, 1003
Kzo9I	GATC	7 cut(s)	337, 396, 477, 790, 838, 966, 1003
LmnI	GCTCC	2 cut(s)	763, 778
Lsp1109I	GCAGC	1 cut(s)	220
LweI	GCATC	1 cut(s)	694
MaeI	CTAG	4 cut(s)	330, 767, 995, 1039
MaeIII	GTNAC	1 cut(s)	601
MalI	GATC	7 cut(s)	339, 398, 479, 792, 840, 968, 1005
MboI	GATC	7 cut(s)	337, 396, 477, 790, 838, 966, 1003
MboII	GAAGA	8 cut(s)	137, 356, 533, 536, 539, 623, 632, 880
MhlI	GDGCHC	2 cut(s)	285, 856
MluCI	AATT	3 cut(s)	211, 461, 932
MlyI	GAGTC	2 cut(s)	572, 916
MmeI	TCCRAC	1 cut(s)	855
MroXI	GAANNNNTTC	1 cut(s)	534
MseI	TTAA	2 cut(s)	126, 303
MslI	CAYNNNNRTG	2 cut(s)	345, 798
MspA1I	CMGCKG	1 cut(s)	483
MspI	CCGG	2 cut(s)	554, 599
MspR9I	CCNGG	2 cut(s)	760, 1015
Mva1269I	GAATGC	1 cut(s)	652
MvaI	CCWGG	2 cut(s)	760, 1015
MwoI	GCNNNNNNNGC	3 cut(s)	44, 61, 991
NdeII	GATC	7 cut(s)	337, 396, 477, 790, 838, 966, 1003
NlaIII	CATG	8 cut(s)	344, 491, 645, 803, 852, 904, 922, 1024
NlaIV	GGNNCC	1 cut(s)	561
NmuCI	GTSAC	1 cut(s)	601
PagI	TCATGA	2 cut(s)	340, 799
PceI	AGGCCT	1 cut(s)	953
PctI	GAATGC	1 cut(s)	652
PdmI	GAANNNNTTC	1 cut(s)	534
PfeI	GAWTC	2 cut(s)	530, 998
PkrI	GCNGC	2 cut(s)	235, 717
PleI	GAGTC	2 cut(s)	572, 916
PpsI	GAGTC	2 cut(s)	572, 916
PshAI	GACNNNNGTC	1 cut(s)	1032
PshBI	ATTAAT	1 cut(s)	303
Psp6I	CCWGG	2 cut(s)	758, 1013
PspEI	GGTNACC	1 cut(s)	601
PspGI	CCWGG	2 cut(s)	758, 1013
PspN4I	GGNNCC	1 cut(s)	561
PspPI	GGNCC	1 cut(s)	159
PvuII	CAGCTG	1 cut(s)	483
RsaI	GTAC	5 cut(s)	334, 373, 383, 504, 541
RsaNI	GTAC	5 cut(s)	333, 372, 382, 503, 540
RseI	CAYNNNNRTG	2 cut(s)	345, 798
SaqAI	TTAA	2 cut(s)	126, 303
SatI	GCNGC	2 cut(s)	234, 716
Sau3AI	GATC	7 cut(s)	337, 396, 477, 790, 838, 966, 1003
Sau96I	GGNCC	1 cut(s)	159
ScaI	AGTACT	1 cut(s)	334
SchI	GAGTC	2 cut(s)	572, 916
ScrFI	CCNGG	2 cut(s)	760, 1015
SduI	GDGCHC	2 cut(s)	285, 856
SfaNI	GCATC	1 cut(s)	694
SinI	GGWCC	1 cut(s)	159
SmiMI	CAYNNNNRTG	2 cut(s)	345, 798
SpeI	ACTAGT	1 cut(s)	329
Sse9I	AATT	3 cut(s)	211, 461, 932
SseBI	AGGCCT	1 cut(s)	953
SsiI	CCGC	2 cut(s)	716, 947
SspMI	CTAG	4 cut(s)	330, 767, 995, 1039
StuI	AGGCCT	1 cut(s)	953
StyD4I	CCNGG	2 cut(s)	758, 1013
TaaI	ACNGT	3 cut(s)	353, 444, 1031
TaqI	TCGA	2 cut(s)	399, 841
TasI	AATT	3 cut(s)	211, 461, 932
TatI	WGTACW	3 cut(s)	332, 381, 502
TauI	GCSGC	1 cut(s)	718
TfiI	GAWTC	2 cut(s)	530, 998
Tru1I	TTAA	2 cut(s)	126, 303
Tru9I	TTAA	2 cut(s)	126, 303
TseFI	GTSAC	1 cut(s)	601
TseI	GCWGC	1 cut(s)	233
Tsp45I	GTSAC	1 cut(s)	601
TspDTI	ATGAA	3 cut(s)	357, 486, 946
TspGWI	ACGGA	1 cut(s)	605
VpaK11BI	GGWCC	1 cut(s)	159
VspI	ATTAAT	1 cut(s)	303
XmnI	GAANNNNTTC	1 cut(s)	534
XspI	CTAG	4 cut(s)	330, 767, 995, 1039
ZrmI	AGTACT	1 cut(s)	334

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.