MD06G1238400.v1.1

KIP1-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0002133
Physical Location & Seq
Reverse (-)
36922984 .. 36925874
2891 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1238400.v1.1.491

Sequence Viewer

Length: 1176 bp
ATGTCGATGGGACCGACAGCGGTGGAGAAACAAATAACAATGTCATCAGCTTCATCATATCCTCCTCCTCCTTCAGTTGAGTTGTCGGCTCCTCCAAGTCCAAGAAGTAGTTTAAGCAGCAGCAACAAGTCCACCATGAATCGGAAACCCCCATGGCTCTTGCCCGTCCTTGACGATATGGAAGAGAGGATGAAGATGGTGGCATCTAACACAGCTCAACAAGACACTGGAGACACCTTCGCTGAACGAGCCGAGGCTTACTACAAACGACGCCCTCAGCTTCTCTCTCTGCTTCAAGACTTGTACAATGCCTACCTCACTTTATCCGATCGTTACATTCAAACAATCGCCAAAACCAATCATCGACGCAGACACTCCTCCCAAACCTCAATCACTGATAATGGCTACTATGACGACTATCATGACCAACAAGACGCAGATGGTGATACATTAAGCCAGATGGATTCGGACGTGGACAGTTCCCTCTCCTATCAGCAATTACCTCTGGCTGCTGCTGCTCAGGATGATGGCATGGTTTTGGATTTGGACGCGATTGTTACGGAGATTGTGATGAAGAATGTCGAATGTGATATCTTACTTGATGAGGCCGACACCACAGAGAGGCGATACAACGAGTCATCCAGGAAGATAGAGTTGCAGAAGAGCTTGCTTGAGGTGCTGGAGTCCGAAAGGCTCATACTACTGCATGAGAATGCCAAGTTGGGGTACAAAATGGGTGCACTGATGGAAGAGAACAAAGCCCTCGCATCCGAGTCTATGTTCATTAAGAGGAAGGCTGGAGAGCTGGCTAGATGTCTGCTCAAGGTGAGGGAGGATCAGAGGGTGTGCATGCTTAGCCGTAAAATCGAGGACCTGCAGGGCCAGATTTATGGGTTGGAGAGGAGGAACAAGGAGTACTATGAGCAACTCATGAAGAGAGACCAATGGTCCTCCCAACTTGAACAAGAAGAGAGTAGGAGCATCAACAACAAGAGCAAGTTTAATGGGAATGAGGTGAACATGGATATTTGCTTCCAAATAGGGAAGATCAATCGGAGGCTGAAGAGAGGTAATAGCACAGTGAAGGATTTTGGAGCTGTGAACGGGAAGAAGGGTTTGAGTTGGTGGGGAAAGGTCAAGAACATGGATTTGTTTCTGTGCGGAGGCTCTACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KIP1

Protein Analysis

392

Amino Acids

44.5

Weight (kDa)

5.67

Isoelectric Point (pI)

61.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KIP1 PF07765 47 - 112 1.1e-12 KIP1-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 882
AccII CGCG 1 cut(s) 551
AciI CCGC 2 cut(s) 20, 1161
AclWI GGATC 1 cut(s) 843
AcuI CTGAAG 2 cut(s) 57, 1082
AcyI GRCGYC 1 cut(s) 271
AfaI GTAC 3 cut(s) 305, 728, 917
AfiI CCNNNNNNNGG 3 cut(s) 141, 621, 723
AgsI TTSAA 3 cut(s) 296, 341, 962
AhdI GACNNNNNGTC 1 cut(s) 946
AjiI CACGTC 1 cut(s) 472
AjnI CCWGG 1 cut(s) 641
AjuI GAANNNNNNNTTGG 2 cut(s) 704, 736
AluBI AGCT 6 cut(s) 50, 215, 280, 666, 805, 1097
AluI AGCT 6 cut(s) 50, 215, 280, 666, 805, 1097
Alw21I GWGCWC 1 cut(s) 742
Alw26I GTCTC 2 cut(s) 225, 933
Alw44I GTGCAC 1 cut(s) 738
AlwI GGATC 1 cut(s) 843
AoxI GGCC 2 cut(s) 606, 880
ApaLI GTGCAC 1 cut(s) 738
ApeKI GCWGC 5 cut(s) 117, 120, 509, 512, 515
AspS9I GGNCC 4 cut(s) 11, 871, 880, 948
AsuHPI GGTGA 3 cut(s) 455, 838, 1027
AvaII GGWCC 3 cut(s) 11, 871, 948
BaeGI GKGCMC 1 cut(s) 742
Bbv12I GWGCWC 1 cut(s) 742
BbvCI CCTCAGC 1 cut(s) 276
BbvI GCAGC 5 cut(s) 129, 132, 496, 499, 502
BccI CCATC 5 cut(s) 190, 434, 454, 521, 739
BceAI ACGGC 1 cut(s) 843
BciT130I CCWGG 1 cut(s) 643
BcoDI GTCTC 2 cut(s) 225, 933
BfaI CTAG 1 cut(s) 810
BfmI CTRYAG 1 cut(s) 875
BfuAI ACCTGC 1 cut(s) 882
BisI GCNGC 5 cut(s) 118, 121, 510, 513, 516
BlpI GCTNAGC 1 cut(s) 854
BlsI GCNGC 5 cut(s) 119, 122, 511, 514, 517
BmcAI AGTACT 1 cut(s) 917
Bme1390I CCNGG 1 cut(s) 643
Bme18I GGWCC 3 cut(s) 11, 871, 948
BmeRI GACNNNNNGTC 1 cut(s) 946
BmgBI CACGTC 1 cut(s) 472
BmgT120I GGNCC 4 cut(s) 11, 871, 880, 948
BmiI GGNNCC 2 cut(s) 12, 90
BmrFI CCNGG 1 cut(s) 643
BmsI GCATC 3 cut(s) 212, 776, 990
BpmI CTGGAG 3 cut(s) 249, 701, 819
Bpu10I CCTNAGC 2 cut(s) 276, 519
Bpu1102I GCTNAGC 1 cut(s) 854
BpuEI CTTGAG 2 cut(s) 692, 806
BsaHI GRCGYC 1 cut(s) 271
BsaI GGTCTC 1 cut(s) 933
BsaJI CCNNGG 2 cut(s) 152, 252
Bsc4I CCNNNNNNNGG 3 cut(s) 141, 621, 723
Bse1I ACTGG 1 cut(s) 232
BseBI CCWGG 1 cut(s) 643
BseDI CCNNGG 2 cut(s) 152, 252
BseGI GGATG 4 cut(s) 195, 529, 638, 767
BseLI CCNNNNNNNGG 3 cut(s) 141, 621, 723
BseMII CTCAG 2 cut(s) 290, 533
BseNI ACTGG 1 cut(s) 232
BseRI GAGGAG 5 cut(s) 54, 57, 81, 367, 916
BseSI GKGCMC 1 cut(s) 742
BseXI GCAGC 5 cut(s) 129, 132, 496, 499, 502
Bsh1236I CGCG 1 cut(s) 551
Bsh1285I CGRYCG 1 cut(s) 331
BshFI GGCC 2 cut(s) 608, 882
BsiEI CGRYCG 1 cut(s) 331
BsiHKAI GWGCWC 1 cut(s) 742
BslFI GGGAC 1 cut(s) 24
BslI CCNNNNNNNGG 3 cut(s) 141, 621, 723
BsmAI GTCTC 2 cut(s) 225, 933
BsmFI GGGAC 1 cut(s) 24
BsmI GAATGC 1 cut(s) 718
BsnI GGCC 2 cut(s) 608, 882
Bso31I GGTCTC 1 cut(s) 933
Bsp1286I GDGCHC 1 cut(s) 742
Bsp1407I TGTACA 1 cut(s) 303
Bsp143I GATC 3 cut(s) 328, 835, 1047
Bsp1720I GCTNAGC 1 cut(s) 854
Bsp19I CCATGG 1 cut(s) 152
BspACI CCGC 2 cut(s) 20, 1161
BspANI GGCC 2 cut(s) 608, 882
BspCNI CTCAG 2 cut(s) 289, 532
BspFNI CGCG 1 cut(s) 551
BspHI TCATGA 2 cut(s) 421, 930
BspLI GGNNCC 2 cut(s) 12, 90
BspMAI CTGCAG 1 cut(s) 879
BspMI ACCTGC 1 cut(s) 882
BspPI GGATC 1 cut(s) 843
BspQI GCTCTTC 1 cut(s) 656
BspTNI GGTCTC 1 cut(s) 933
BsrGI TGTACA 1 cut(s) 303
BsrI ACTGG 1 cut(s) 232
BssECI CCNNGG 2 cut(s) 152, 252
BssMI GATC 3 cut(s) 328, 835, 1047
BssNI GRCGYC 1 cut(s) 271
BssT1I CCWWGG 1 cut(s) 152
Bst2UI CCWGG 1 cut(s) 643
Bst4CI ACNGT 2 cut(s) 479, 1081
Bst6I CTCTTC 6 cut(s) 177, 656, 744, 929, 963, 1058
BstACI GRCGYC 1 cut(s) 271
BstAUI TGTACA 1 cut(s) 303
BstC8I GCNNGC 3 cut(s) 668, 807, 851
BstDEI CTNAG 3 cut(s) 276, 519, 854
BstDSI CCRYGG 1 cut(s) 152
BstF5I GGATG 4 cut(s) 195, 529, 638, 767
BstFNI CGCG 1 cut(s) 551
BstKTI GATC 3 cut(s) 331, 838, 1050
BstMAI GTCTC 2 cut(s) 225, 933
BstMBI GATC 3 cut(s) 328, 835, 1047
BstMCI CGRYCG 1 cut(s) 331
BstMWI GCNNNNNNNGC 4 cut(s) 248, 515, 676, 855
BstNI CCWGG 1 cut(s) 643
BstNSI RCATGY 1 cut(s) 853
BstSCI CCNGG 1 cut(s) 641
BstSFI CTRYAG 1 cut(s) 875
BstSLI GKGCMC 1 cut(s) 742
BstUI CGCG 1 cut(s) 551
BstV1I GCAGC 5 cut(s) 129, 132, 496, 499, 502
BstXI CCANNNNNNTGG 1 cut(s) 890
BsuRI GGCC 2 cut(s) 608, 882
BtgI CCRYGG 1 cut(s) 152
BtrI CACGTC 1 cut(s) 472
BtsCI GGATG 4 cut(s) 195, 529, 638, 767
BtsIMutI CAGTG 4 cut(s) 225, 393, 740, 1086
BveI ACCTGC 1 cut(s) 882
Cac8I GCNNGC 3 cut(s) 668, 807, 851
CciI TCATGA 2 cut(s) 421, 930
Cfr13I GGNCC 4 cut(s) 11, 871, 880, 948
CseI GACGC 4 cut(s) 279, 375, 443, 557
Csp6I GTAC 3 cut(s) 304, 727, 916
CviAII CATG 9 cut(s) 136, 153, 422, 532, 707, 850, 931, 1021, 1144
CviQI GTAC 3 cut(s) 304, 727, 916
DdeI CTNAG 3 cut(s) 276, 519, 854
DpnI GATC 3 cut(s) 330, 837, 1049
DpnII GATC 3 cut(s) 328, 835, 1047
DriI GACNNNNNGTC 1 cut(s) 946
Eam1104I CTCTTC 6 cut(s) 177, 656, 744, 929, 963, 1058
Eam1105I GACNNNNNGTC 1 cut(s) 946
EarI CTCTTC 6 cut(s) 177, 656, 744, 929, 963, 1058
Eco130I CCWWGG 1 cut(s) 152
Eco31I GGTCTC 1 cut(s) 933
Eco32I GATATC 1 cut(s) 592
Eco47I GGWCC 3 cut(s) 11, 871, 948
Eco57I CTGAAG 2 cut(s) 57, 1082
EcoO109I RGGNCCY 1 cut(s) 871
EcoRII CCWGG 1 cut(s) 641
EcoRV GATATC 1 cut(s) 592
EcoT14I CCWWGG 1 cut(s) 152
ErhI CCWWGG 1 cut(s) 152
FaeI CATG 9 cut(s) 139, 156, 425, 535, 710, 853, 934, 1024, 1147
FaqI GGGAC 1 cut(s) 24
FatI CATG 9 cut(s) 135, 152, 421, 531, 706, 849, 930, 1020, 1143
Fnu4HI GCNGC 5 cut(s) 118, 121, 510, 513, 516
FokI GGATG 4 cut(s) 202, 536, 625, 754
Fsp4HI GCNGC 5 cut(s) 118, 121, 510, 513, 516
FspBI CTAG 1 cut(s) 810
GluI GCNGC 5 cut(s) 118, 121, 510, 513, 516
GsuI CTGGAG 3 cut(s) 249, 701, 819
HaeIII GGCC 2 cut(s) 608, 882
HgaI GACGC 4 cut(s) 279, 375, 443, 557
Hin1I GRCGYC 1 cut(s) 271
Hin1II CATG 9 cut(s) 139, 156, 425, 535, 710, 853, 934, 1024, 1147
HinfI GANTC 5 cut(s) 139, 464, 635, 683, 773
HphI GGTGA 3 cut(s) 455, 838, 1027
Hpy166II GTNNAC 5 cut(s) 132, 475, 740, 1018, 1102
Hpy188I TCNGA 7 cut(s) 144, 328, 469, 688, 772, 840, 1056
Hpy188III TCNNGA 5 cut(s) 296, 422, 521, 931, 1138
Hpy8I GTNNAC 5 cut(s) 132, 475, 740, 1018, 1102
Hpy99I CGWCG 2 cut(s) 273, 369
HpyAV CCTTC 5 cut(s) 81, 247, 787, 1078, 1105
HpyCH4III ACNGT 2 cut(s) 479, 1081
HpyCH4IV ACGT 1 cut(s) 471
HpyCH4V TGCA 5 cut(s) 658, 706, 740, 849, 877
HpyF10VI GCNNNNNNNGC 4 cut(s) 248, 515, 676, 855
HpyF3I CTNAG 3 cut(s) 276, 519, 854
HpySE526I ACGT 1 cut(s) 471
Hsp92I GRCGYC 1 cut(s) 271
Hsp92II CATG 9 cut(s) 139, 156, 425, 535, 710, 853, 934, 1024, 1147
Kzo9I GATC 3 cut(s) 328, 835, 1047
LguI GCTCTTC 1 cut(s) 656
LmnI GCTCC 3 cut(s) 94, 978, 1094
Lsp1109I GCAGC 5 cut(s) 129, 132, 496, 499, 502
LweI GCATC 3 cut(s) 212, 776, 990
MaeI CTAG 1 cut(s) 810
MaeII ACGT 1 cut(s) 471
MaeIII GTNAC 2 cut(s) 332, 556
MalI GATC 3 cut(s) 330, 837, 1049
MboI GATC 3 cut(s) 328, 835, 1047
MhlI GDGCHC 1 cut(s) 742
MluCI AATT 1 cut(s) 497
MlyI GAGTC 3 cut(s) 644, 692, 782
MmeI TCCRAC 1 cut(s) 876
MseI TTAA 5 cut(s) 113, 452, 786, 1002, 1174
MslI CAYNNNNRTG 1 cut(s) 711
MspA1I CMGCKG 1 cut(s) 20
MspR9I CCNGG 1 cut(s) 643
Mva1269I GAATGC 1 cut(s) 718
MvaI CCWGG 1 cut(s) 643
MvnI CGCG 1 cut(s) 551
MwoI GCNNNNNNNGC 4 cut(s) 248, 515, 676, 855
NcoI CCATGG 1 cut(s) 152
NdeII GATC 3 cut(s) 328, 835, 1047
NlaIII CATG 9 cut(s) 139, 156, 425, 535, 710, 853, 934, 1024, 1147
NlaIV GGNNCC 2 cut(s) 12, 90
NmeAIII GCCGAG 1 cut(s) 277
NspI RCATGY 1 cut(s) 853
PaeI GCATGC 1 cut(s) 853
PagI TCATGA 2 cut(s) 421, 930
PciSI GCTCTTC 1 cut(s) 656
PcsI WCGNNNNNNNCGW 1 cut(s) 11
PctI GAATGC 1 cut(s) 718
PfeI GAWTC 2 cut(s) 139, 464
PfoI TCCNGGA 1 cut(s) 641
PkrI GCNGC 5 cut(s) 119, 122, 511, 514, 517
Ple19I CGATCG 1 cut(s) 331
PleI GAGTC 3 cut(s) 643, 691, 781
PpsI GAGTC 3 cut(s) 643, 691, 781
PpuMI RGGWCCY 1 cut(s) 871
Psp5II RGGWCCY 1 cut(s) 871
Psp6I CCWGG 1 cut(s) 641
PspGI CCWGG 1 cut(s) 641
PspN4I GGNNCC 2 cut(s) 12, 90
PspPI GGNCC 4 cut(s) 11, 871, 880, 948
PspPPI RGGWCCY 1 cut(s) 871
PsrI GAACNNNNNNTAC 2 cut(s) 899, 931
PstI CTGCAG 1 cut(s) 879
PvuI CGATCG 1 cut(s) 331
RsaI GTAC 3 cut(s) 305, 728, 917
RsaNI GTAC 3 cut(s) 304, 727, 916
RseI CAYNNNNRTG 1 cut(s) 711
SapI GCTCTTC 1 cut(s) 656
SaqAI TTAA 5 cut(s) 113, 452, 786, 1002, 1174
SatI GCNGC 5 cut(s) 118, 121, 510, 513, 516
Sau3AI GATC 3 cut(s) 328, 835, 1047
Sau96I GGNCC 4 cut(s) 11, 871, 880, 948
SbfI CCTGCAGG 1 cut(s) 879
ScaI AGTACT 1 cut(s) 917
SchI GAGTC 3 cut(s) 644, 692, 782
ScrFI CCNGG 1 cut(s) 643
SdaI CCTGCAGG 1 cut(s) 879
SduI GDGCHC 1 cut(s) 742
SfaNI GCATC 3 cut(s) 212, 776, 990
SfcI CTRYAG 1 cut(s) 875
SinI GGWCC 3 cut(s) 11, 871, 948
SmiMI CAYNNNNRTG 1 cut(s) 711
SmlI CTYRAG 2 cut(s) 671, 821
SmoI CTYRAG 2 cut(s) 671, 821
SphI GCATGC 1 cut(s) 853
Sse8387I CCTGCAGG 1 cut(s) 879
Sse9I AATT 1 cut(s) 497
SsiI CCGC 2 cut(s) 20, 1161
SspMI CTAG 1 cut(s) 810
StyD4I CCNGG 1 cut(s) 641
StyI CCWWGG 1 cut(s) 152
TaaI ACNGT 2 cut(s) 479, 1081
TaiI ACGT 1 cut(s) 474
TaqI TCGA 4 cut(s) 5, 364, 582, 867
TaqII GACCGA 1 cut(s) 28
TasI AATT 1 cut(s) 497
TatI WGTACW 2 cut(s) 303, 915
TfiI GAWTC 2 cut(s) 139, 464
Tru1I TTAA 5 cut(s) 113, 452, 786, 1002, 1174
Tru9I TTAA 5 cut(s) 113, 452, 786, 1002, 1174
TscAI CASTG 4 cut(s) 232, 400, 747, 1086
TseI GCWGC 5 cut(s) 117, 120, 509, 512, 515
TspDTI ATGAA 6 cut(s) 42, 152, 206, 587, 772, 947
TspGWI ACGGA 1 cut(s) 575
TspRI CASTG 4 cut(s) 232, 400, 747, 1086
VneI GTGCAC 1 cut(s) 738
VpaK11BI GGWCC 3 cut(s) 11, 871, 948
XceI RCATGY 1 cut(s) 853
XspI CTAG 1 cut(s) 810
ZrmI AGTACT 1 cut(s) 917
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.