Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0002133

Physical Location & Seq

Genomic Coordinates Reverse (-)

36936139 .. 36937218

Gene Structure 1080 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1238700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGATGGACCATATGTTTGGAAGAGGAAGACTGGAAACGGCAATCTGGGCGGCAAAGGTTTTGCTGCTTTGTGTAGGGACAGTGTCGACAGTGGTATTCTTCAAAGCAGCAGTCATTCCTTACCTGCTCAACCTCAGTCTTTCCCTCGTCCCCCACATCTGGACCTCCTTCAAAAGCTGCTGCTCTTTATCCCCTCTTTACATCTTCATCATCCTCAACTTTATCATCGTCACCATCGCCGCCTCCTCCACTTTCCAACGCAGAAACCACAAAAACAATGCCAAGACCACTGACAGCATTGACCCCTCTCACGATTTTATTTACAGTCCAGACAGCAGCACCGACAACAAGTACAACAGCAGCCAATCCCAGATGTTGTCCGCCCAGCCGCAGCAGCAGCAGCAGGACAGATTAATCCAAAGTCATCCGGAAGATGATGCAACTTCTCTATTTTCTTCATCATCTCTGGACAAGAATCTGTACTCATCGAATAATGAGATGATGAGTTGGCTTGACATTCACACAGTACAAGAAGGTGTCATGCCAAGTACTAGTCTGAGTACTAGCACTACTACCTTTGATTATGATGGTCATCAGCGATCTGGGCCGTCACCGGAAAAGTGCTGCGGTGACTCGATGCCAACAGAGGAGGAGATGGAGGCGGATGATGACACCAAGACATTGGACACGACATGGAAGGCCATCATGGAGGGGAAAGGCAAGGCAAGTGGTAAGCACCTCAAAAAGAGTGACACTTGGGACACGCCTCCTCGCCTAACCGGCCGGCAATTGGCCATCACAAGTACCAAATTCAAAGTCCCACAACGTCAACTAAATCAATGTAACTTTGATGACGATCACGATGACGAGGACGATGCATTGACATGGGCTCGCCGGGAGCTTAAGAAATCGGATACATTTAGCGACAGAGTGTCGTTGAGAAGGGAAAAGTCGATGACTCAGGAAGAGTTGAACCAGCGAGCAGAGGCCTTCATCAAGAAGTTCAACAACGACATCAGGCTCCAGAGGTTAGAATCTGATCAACGTCGTTTCAGGGAGATTGCTAGCACCGGAATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4408 DUF761

Protein Analysis

360

Amino Acids

40.78

Weight (kDa)

5.76

Isoelectric Point (pI)

44.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4408	PF14364	51 - 85	1.6e-08	Domain of unknown function (DUF4408)
DUF761	PF05553	321 - 353	4.3e-10	Cotton fibre expressed protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002133)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48405 AT3G17680 AT3G17680 AT3G17680
fragaria_vesca	FvH4_5g18280 FvH4_5g18280 FvH4_5g18280 FvH4_5g18280 FvH4_5g18280 FvH4_5g18290
malus_domestica	MD06G1238400.v1.1 MD06G1238700.v1.1 MD14G1244700.v1.1 MD14G1244900.v1.1
prunus_persica	Prupe.5G242300_v2.0.a1 Prupe.5G242300_v2.0.a1 Prupe.5G242300_v2.0.a1 Prupe.5G242300_v2.0.a1 Prupe.5G242300_v2.0.a1 Prupe.5G242300_v2.0.a1 Prupe.5G242600_v2.0.a1
pyrus_communis	pycom06g21390 pycom06g21420 pycom14g20590
rosa_chinensis	RchiOBHm_Chr7g0177291 RchiOBHm_Chr7g0177301
rosa_laevigata	RLG00000005548
rosa_multiflora	Rmu_sc0005310.1_g000008
rosa_roxburghii	Rroxscaffold_3G00275960 Rroxscaffold_3G00275970
rosa_rugosa	Rorug06G0404500 Rorug06G0404600 Rorug06G0404700 Rorug06G0404800
rosa_samantha	Rh7AG004500 Rh7AG004600 Rh7BG004400 Rh7BG004500 Rh7CG004300 Rh7CG004400 Rh7DG004300 Rh7DG004400
rosa_wichuraiana	Rw7G000370 Rw7G000380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	132
AccI	GTMKAC	1 cut(s)	86
AccIII	TCCGGA	1 cut(s)	427
AciI	CCGC	6 cut(s)	50, 240, 381, 389, 627, 662
AcoI	YGGCCR	2 cut(s)	781, 792
AcsI	RAATTY	2 cut(s)	809, 1074
AfaI	GTAC	6 cut(s)	353, 482, 528, 550, 562, 805
AfiI	CCNNNNNNNGG	2 cut(s)	159, 790
AflII	CTTAAG	1 cut(s)	902
AgsI	TTSAA	5 cut(s)	103, 172, 814, 973, 1006
AhdI	GACNNNNNGTC	1 cut(s)	931
AhlI	ACTAGT	1 cut(s)	551
AluBI	AGCT	2 cut(s)	177, 901
AluI	AGCT	2 cut(s)	177, 901
Aor13HI	TCCGGA	1 cut(s)	427
AoxI	GGCC	5 cut(s)	605, 699, 781, 792, 987
ApoI	RAATTY	2 cut(s)	809, 1074
ArsI	GACNNNNNNTTYG	5 cut(s)	31, 96, 128, 801, 833
AseI	ATTAAT	1 cut(s)	413
AspS9I	GGNCC	3 cut(s)	7, 162, 605
AsuC2I	CCSGG	1 cut(s)	896
AsuHPI	GGTGA	3 cut(s)	223, 603, 641
AsuNHI	GCTAGC	1 cut(s)	1064
AvaII	GGWCC	2 cut(s)	7, 162
BalI	TGGCCA	1 cut(s)	794
BanII	GRGCYC	1 cut(s)	892
BbsI	GAAGAC	1 cut(s)	34
BccI	CCATC	5 cut(s)	242, 581, 649, 710, 803
BceAI	ACGGC	2 cut(s)	54, 592
BcgI	CGANNNNNNTGC	2 cut(s)	857, 891
BciVI	GTATCC	1 cut(s)	907
BclI	TGATCA	1 cut(s)	1039
BcnI	CCSGG	1 cut(s)	896
BcuI	ACTAGT	1 cut(s)	551
BfaI	CTAG	3 cut(s)	552, 564, 1065
BfrI	CTTAAG	1 cut(s)	902
BfuAI	ACCTGC	1 cut(s)	132
BfuI	GTATCC	1 cut(s)	907
BglI	GCCNNNNNGGC	1 cut(s)	780
BmcAI	AGTACT	2 cut(s)	550, 562
Bme1390I	CCNGG	1 cut(s)	896
Bme18I	GGWCC	2 cut(s)	7, 162
BmeRI	GACNNNNNGTC	1 cut(s)	931
BmgT120I	GGNCC	3 cut(s)	7, 162, 605
BmiI	GGNNCC	1 cut(s)	1022
BmrFI	CCNGG	1 cut(s)	896
BmsI	GCATC	3 cut(s)	427, 627, 865
BmtI	GCTAGC	1 cut(s)	1068
BpiI	GAAGAC	1 cut(s)	34
BpmI	CTGGAG	1 cut(s)	1007
BpuMI	CCSGG	1 cut(s)	896
BsaBI	GATNNNNATC	2 cut(s)	591, 855
BsaWI	WCCGGW	3 cut(s)	427, 613, 1070
Bsc4I	CCNNNNNNNGG	2 cut(s)	159, 790
Bse118I	RCCGGY	2 cut(s)	779, 783
Bse1I	ACTGG	1 cut(s)	36
Bse8I	GATNNNNATC	2 cut(s)	591, 855
BseAI	TCCGGA	1 cut(s)	427
BseGI	GGATG	3 cut(s)	210, 424, 670
BseJI	GATNNNNATC	2 cut(s)	591, 855
BseLI	CCNNNNNNNGG	2 cut(s)	159, 790
BseMII	CTCAG	3 cut(s)	148, 548, 974
BseNI	ACTGG	1 cut(s)	36
BseRI	GAGGAG	4 cut(s)	235, 662, 665, 759
BseX3I	CGGCCG	1 cut(s)	781
BseYI	CCCAGC	1 cut(s)	384
Bsh1285I	CGRYCG	1 cut(s)	784
BshFI	GGCC	5 cut(s)	607, 701, 783, 794, 989
BsiEI	CGRYCG	1 cut(s)	784
BsiSI	CCGG	6 cut(s)	428, 614, 780, 784, 895, 1071
BslFI	GGGAC	4 cut(s)	91, 134, 773, 803
BslI	CCNNNNNNNGG	2 cut(s)	159, 790
BsmFI	GGGAC	4 cut(s)	91, 134, 773, 803
BsnI	GGCC	5 cut(s)	607, 701, 783, 794, 989
Bsp1286I	GDGCHC	1 cut(s)	892
Bsp13I	TCCGGA	1 cut(s)	427
Bsp143I	GATC	3 cut(s)	599, 856, 1039
BspACI	CCGC	6 cut(s)	50, 240, 381, 389, 627, 662
BspANI	GGCC	5 cut(s)	607, 701, 783, 794, 989
BspCNI	CTCAG	3 cut(s)	147, 549, 973
BspEI	TCCGGA	1 cut(s)	427
BspLI	GGNNCC	1 cut(s)	1022
BspMI	ACCTGC	1 cut(s)	132
BspOI	GCTAGC	1 cut(s)	1068
BspTI	CTTAAG	1 cut(s)	902
BsrFI	RCCGGY	2 cut(s)	779, 783
BsrI	ACTGG	1 cut(s)	36
BssAI	RCCGGY	2 cut(s)	779, 783
BssMI	GATC	3 cut(s)	599, 856, 1039
Bst4CI	ACNGT	4 cut(s)	82, 91, 326, 526
Bst6I	CTCTTC	2 cut(s)	16, 960
BstAFI	CTTAAG	1 cut(s)	902
BstC8I	GCNNGC	4 cut(s)	785, 892, 981, 1066
BstDEI	CTNAG	3 cut(s)	134, 557, 960
BstF5I	GGATG	3 cut(s)	210, 424, 670
BstKTI	GATC	3 cut(s)	602, 859, 1042
BstMBI	GATC	3 cut(s)	599, 856, 1039
BstMCI	CGRYCG	1 cut(s)	784
BstMWI	GCNNNNNNNGC	6 cut(s)	47, 394, 397, 400, 604, 780
BstSCI	CCNGG	1 cut(s)	894
BstV2I	GAAGAC	1 cut(s)	34
BstXI	CCANNNNNNTGG	2 cut(s)	17, 682
BstZI	CGGCCG	1 cut(s)	781
BsuI	GTATCC	1 cut(s)	907
BsuRI	GGCC	5 cut(s)	607, 701, 783, 794, 989
BtgZI	GCGATG	1 cut(s)	220
BtsCI	GGATG	3 cut(s)	210, 424, 670
BtsIMutI	CAGTG	3 cut(s)	87, 96, 288
BveI	ACCTGC	1 cut(s)	132
Cac8I	GCNNGC	4 cut(s)	785, 892, 981, 1066
Cfr10I	RCCGGY	2 cut(s)	779, 783
Cfr13I	GGNCC	3 cut(s)	7, 162, 605
Csp6I	GTAC	6 cut(s)	352, 481, 527, 549, 561, 804
CspCI	CAANNNNNGTGG	2 cut(s)	709, 744
CviAII	CATG	4 cut(s)	541, 693, 706, 885
CviQI	GTAC	6 cut(s)	352, 481, 527, 549, 561, 804
DdeI	CTNAG	3 cut(s)	134, 557, 960
DpnI	GATC	3 cut(s)	601, 858, 1041
DpnII	GATC	3 cut(s)	599, 856, 1039
DriI	GACNNNNNGTC	1 cut(s)	931
EaeI	YGGCCR	2 cut(s)	781, 792
EagI	CGGCCG	1 cut(s)	781
Eam1104I	CTCTTC	2 cut(s)	16, 960
Eam1105I	GACNNNNNGTC	1 cut(s)	931
EarI	CTCTTC	2 cut(s)	16, 960
EciI	GGCGGA	2 cut(s)	370, 677
EclXI	CGGCCG	1 cut(s)	781
Eco147I	AGGCCT	1 cut(s)	989
Eco24I	GRGCYC	1 cut(s)	892
Eco47I	GGWCC	2 cut(s)	7, 162
Eco52I	CGGCCG	1 cut(s)	781
EcoT22I	ATGCAT	1 cut(s)	880
EcoT38I	GRGCYC	1 cut(s)	892
FaeI	CATG	4 cut(s)	544, 696, 709, 888
FaiI	YATR	7 cut(s)	12, 14, 542, 585, 694, 707, 886
FaqI	GGGAC	4 cut(s)	91, 134, 773, 803
FatI	CATG	4 cut(s)	540, 692, 705, 884
FauNDI	CATATG	1 cut(s)	12
FbaI	TGATCA	1 cut(s)	1039
FblI	GTMKAC	1 cut(s)	86
FokI	GGATG	3 cut(s)	197, 411, 677
FriOI	GRGCYC	1 cut(s)	892
FspBI	CTAG	3 cut(s)	552, 564, 1065
GsaI	CCCAGC	1 cut(s)	388
GsuI	CTGGAG	1 cut(s)	1007
HaeIII	GGCC	5 cut(s)	607, 701, 783, 794, 989
HapII	CCGG	6 cut(s)	428, 614, 780, 784, 895, 1071
Hin1II	CATG	4 cut(s)	544, 696, 709, 888
HincII	GTYRAC	2 cut(s)	87, 830
HindII	GTYRAC	2 cut(s)	87, 830
HinfI	GANTC	4 cut(s)	475, 632, 958, 1034
HpaII	CCGG	6 cut(s)	428, 614, 780, 784, 895, 1071
HphI	GGTGA	3 cut(s)	223, 603, 641
Hpy166II	GTNNAC	2 cut(s)	87, 830
Hpy188I	TCNGA	3 cut(s)	558, 913, 1039
Hpy188III	TCNNGA	9 cut(s)	160, 311, 329, 428, 467, 860, 962, 997, 1024
Hpy8I	GTNNAC	2 cut(s)	87, 830
Hpy99I	CGWCG	1 cut(s)	1050
HpyAV	CCTTC	5 cut(s)	178, 527, 691, 936, 1000
HpyCH4III	ACNGT	4 cut(s)	82, 91, 326, 526
HpyCH4IV	ACGT	2 cut(s)	826, 1045
HpyCH4V	TGCA	2 cut(s)	440, 878
HpyF10VI	GCNNNNNNNGC	6 cut(s)	47, 394, 397, 400, 604, 780
HpyF3I	CTNAG	3 cut(s)	134, 557, 960
HpySE526I	ACGT	2 cut(s)	826, 1045
Hsp92II	CATG	4 cut(s)	544, 696, 709, 888
Kpn2I	TCCGGA	1 cut(s)	427
KroI	GCCGGC	1 cut(s)	783
KroNI	GCCGGC	1 cut(s)	785
Ksp22I	TGATCA	1 cut(s)	1039
Kzo9I	GATC	3 cut(s)	599, 856, 1039
LmnI	GCTCC	2 cut(s)	898, 1026
LweI	GCATC	3 cut(s)	427, 627, 865
MaeI	CTAG	3 cut(s)	552, 564, 1065
MaeII	ACGT	2 cut(s)	826, 1045
MaeIII	GTNAC	5 cut(s)	229, 609, 629, 749, 842
MalI	GATC	3 cut(s)	601, 858, 1041
MboI	GATC	3 cut(s)	599, 856, 1039
MboII	GAAGA	7 cut(s)	33, 39, 91, 196, 443, 447, 977
MfeI	CAATTG	1 cut(s)	788
MhlI	GDGCHC	1 cut(s)	892
MlsI	TGGCCA	1 cut(s)	794
MluCI	AATT	3 cut(s)	788, 809, 1074
MluNI	TGGCCA	1 cut(s)	794
MlyI	GAGTC	2 cut(s)	626, 952
MmeI	TCCRAC	1 cut(s)	280
Mox20I	TGGCCA	1 cut(s)	794
Mph1103I	ATGCAT	1 cut(s)	880
MroI	TCCGGA	1 cut(s)	427
MroNI	GCCGGC	1 cut(s)	783
MscI	TGGCCA	1 cut(s)	794
MseI	TTAA	2 cut(s)	413, 903
MslI	CAYNNNNRTG	1 cut(s)	883
Msp20I	TGGCCA	1 cut(s)	794
MspCI	CTTAAG	1 cut(s)	902
MspI	CCGG	6 cut(s)	428, 614, 780, 784, 895, 1071
MspR9I	CCNGG	1 cut(s)	896
MunI	CAATTG	1 cut(s)	788
MwoI	GCNNNNNNNGC	6 cut(s)	47, 394, 397, 400, 604, 780
NaeI	GCCGGC	1 cut(s)	785
NciI	CCSGG	1 cut(s)	896
NdeI	CATATG	1 cut(s)	12
NdeII	GATC	3 cut(s)	599, 856, 1039
NgoMIV	GCCGGC	1 cut(s)	783
NheI	GCTAGC	1 cut(s)	1064
NlaIII	CATG	4 cut(s)	544, 696, 709, 888
NlaIV	GGNNCC	1 cut(s)	1022
NmuCI	GTSAC	4 cut(s)	229, 609, 629, 749
NsiI	ATGCAT	1 cut(s)	880
PceI	AGGCCT	1 cut(s)	989
PdiI	GCCGGC	1 cut(s)	785
PfeI	GAWTC	2 cut(s)	475, 1034
PflFI	GACNNNGTC	1 cut(s)	82
PleI	GAGTC	2 cut(s)	626, 952
PpsI	GAGTC	2 cut(s)	626, 952
PshBI	ATTAAT	1 cut(s)	413
PspFI	CCCAGC	1 cut(s)	384
PspN4I	GGNNCC	1 cut(s)	1022
PspPI	GGNCC	3 cut(s)	7, 162, 605
PsyI	GACNNNGTC	1 cut(s)	82
RsaI	GTAC	6 cut(s)	353, 482, 528, 550, 562, 805
RsaNI	GTAC	6 cut(s)	352, 481, 527, 549, 561, 804
RseI	CAYNNNNRTG	1 cut(s)	883
SalI	GTCGAC	1 cut(s)	85
SaqAI	TTAA	2 cut(s)	413, 903
Sau3AI	GATC	3 cut(s)	599, 856, 1039
Sau96I	GGNCC	3 cut(s)	7, 162, 605
ScaI	AGTACT	2 cut(s)	550, 562
SchI	GAGTC	2 cut(s)	626, 952
ScrFI	CCNGG	1 cut(s)	896
SduI	GDGCHC	1 cut(s)	892
SfaNI	GCATC	3 cut(s)	427, 627, 865
SinI	GGWCC	2 cut(s)	7, 162
SmiMI	CAYNNNNRTG	1 cut(s)	883
SmlI	CTYRAG	1 cut(s)	902
SmoI	CTYRAG	1 cut(s)	902
SpeI	ACTAGT	1 cut(s)	551
Sse9I	AATT	3 cut(s)	788, 809, 1074
SseBI	AGGCCT	1 cut(s)	989
SsiI	CCGC	6 cut(s)	50, 240, 381, 389, 627, 662
SspMI	CTAG	3 cut(s)	552, 564, 1065
StuI	AGGCCT	1 cut(s)	989
StyD4I	CCNGG	1 cut(s)	894
TaaI	ACNGT	4 cut(s)	82, 91, 326, 526
TaiI	ACGT	2 cut(s)	829, 1048
TaqI	TCGA	4 cut(s)	86, 488, 635, 953
TasI	AATT	3 cut(s)	788, 809, 1074
TatI	WGTACW	5 cut(s)	351, 480, 526, 548, 560
TauI	GCSGC	3 cut(s)	53, 242, 391
TfiI	GAWTC	2 cut(s)	475, 1034
Tru1I	TTAA	2 cut(s)	413, 903
Tru9I	TTAA	2 cut(s)	413, 903
TscAI	CASTG	3 cut(s)	87, 96, 295
TseFI	GTSAC	4 cut(s)	229, 609, 629, 749
Tsp45I	GTSAC	4 cut(s)	229, 609, 629, 749
TspDTI	ATGAA	3 cut(s)	196, 447, 982
TspRI	CASTG	3 cut(s)	87, 96, 295
Tth111I	GACNNNGTC	1 cut(s)	82
Vha464I	CTTAAG	1 cut(s)	902
VpaK11BI	GGWCC	2 cut(s)	7, 162
VspI	ATTAAT	1 cut(s)	413
XapI	RAATTY	2 cut(s)	809, 1074
XmiI	GTMKAC	1 cut(s)	86
XspI	CTAG	3 cut(s)	552, 564, 1065
ZrmI	AGTACT	2 cut(s)	550, 562
Zsp2I	ATGCAT	1 cut(s)	880

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.