Rh7DG004400

KIP1-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0002133
Physical Location & Seq
Forward (+)
374110 .. 376381
2272 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG004400.1

Sequence Viewer

Length: 1251 bp
ATGGAGAAACCGACGACACCACCACCACCACCATCATCAGCTTCTTCTGTTCAAATTCATCAGGAGTCACTTCTGACTAGTCCAACGTTGTCAAGCACAAGGAAGATGAGCTTAAGCACCGCCCCGACCACCATGGCCACCACCGCCAAACCGACCTGGCTCCTCTCCAACCTTGCCGATGTGGAAGAGAGGATGAAGATGCTAGCATTTAACAGTAGTAACAGTAAAAGTACTAAAACTCCTCAAGATCAAGACAATGGGGACACCTTCGCGGAGCGAGCTGAAGCTTACTACAAAACACGCCCTCAGCTGCTATCCCTACTTCAAGACTTGTACAATTCCTATCTCACTCTCTCTGACCGTTACATTCAAACAATCGCCAAAACTACTAGTCTGAGTCAGAGCCAGATTTTTCATCCTCCTCGTCGACAATCTTCTCAAACCTCAACCATTGAATACTATGATTACTATGACCAGCAAGATCAATATGAGACTAGCCAGAATGATTCAGATGTGGAGAGCTCCCTCTCGTATCAGCAATTTCCCACATCACTACTTGCTCAAGATGATGATGATGATGATACCACCATGGTGTCAAGTTTTGACGCAATTGTCGCCGAGATTGTGATAAAAAATGTGGAATGCGATATCCTACTTCATGAGGTCAATGCATCGGAGAGGCAACAAAATGAATCCTCGAGGAAGATAGAGTTGCAGAAGAGCTTGCTTGAGGTTTTGGAGTCTGAAAGGCTCATACTACTGAATGAGAATGCTAAATTGGGTTACAGAGTGGGTGCATTGATGGAAGAGAACAAAGCGCTTGCCTCTGAGTCTCTGTTCATGAGGAGGAAGGCCGGTGAGCTAGCTAGGTATTTGCTCCAAATGAGAGAGGACCGCAGGGTCAGCATGCTCAGCCGTAAGATAGAGGACCTTCAGGGACAGATTTATGGGTTGGAGAAGCGGAACAAGGAGTACTACCAGCAACTTGTCAACAATGATCACTCACAACCAGGATCACTTGAAGAAGAGAAGAATAGTAGCAACAACAAGAAGAAGACTCGTGGTAGAAGTAGTAATGAGGTGGATTTGCACGTTTGCTTTCAAATAGGAAAGATGAAGAGGAGAGGTGGTACTGGGACGAGGACTGGTAAGAGGGGTACTGGCACTGACAAGAAAGGTTCTAGTTGGTGGGGAAAGGTCAAGAACATAGACTTGTTTCTATGTGGACTTAACCCAACTTCTACTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KIP1

Protein Analysis

416

Amino Acids

47.09

Weight (kDa)

6.09

Isoelectric Point (pI)

58.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KIP1 PF07765 48 - 122 4.8e-10 KIP1-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 611, 899
AbsI CCTCGAGG 1 cut(s) 697
AccI GTMKAC 1 cut(s) 427
AccII CGCG 1 cut(s) 272
AciI CCGC 5 cut(s) 120, 144, 272, 895, 961
AclI AACGTT 1 cut(s) 86
AclWI GGATC 1 cut(s) 1021
AcoI YGGCCR 1 cut(s) 135
AcsI RAATTY 1 cut(s) 54
AcuI CTGAAG 2 cut(s) 303, 917
AfaI GTAC 5 cut(s) 232, 335, 974, 1132, 1159
AfeI AGCGCT 1 cut(s) 819
AflII CTTAAG 1 cut(s) 112
AgsI TTSAA 6 cut(s) 53, 326, 371, 455, 1022, 1103
AhlI ACTAGT 2 cut(s) 77, 389
AjnI CCWGG 2 cut(s) 155, 1009
AjuI GAANNNNNNNTTGG 2 cut(s) 761, 793
AleI CACNNNNGTG 1 cut(s) 590
AluBI AGCT 9 cut(s) 41, 111, 281, 287, 310, 522, 723, 862, 866
AluI AGCT 9 cut(s) 41, 111, 281, 287, 310, 522, 723, 862, 866
Alw21I GWGCWC 1 cut(s) 524
Alw26I GTCTC 2 cut(s) 485, 837
AlwI GGATC 1 cut(s) 1021
Ama87I CYCGRG 1 cut(s) 697
Aor51HI AGCGCT 1 cut(s) 819
AoxI GGCC 2 cut(s) 135, 852
ApeKI GCWGC 1 cut(s) 310
ApoI RAATTY 1 cut(s) 54
AspLEI GCGC 1 cut(s) 820
AspS9I GGNCC 2 cut(s) 892, 928
AsuHPI GGTGA 1 cut(s) 869
AsuNHI GCTAGC 2 cut(s) 202, 862
AvaI CYCGRG 1 cut(s) 697
AvaII GGWCC 2 cut(s) 892, 928
BalI TGGCCA 1 cut(s) 137
BanII GRGCYC 1 cut(s) 524
BauI CACGAG 1 cut(s) 1059
BbsI GAAGAC 1 cut(s) 1061
Bbv12I GWGCWC 1 cut(s) 524
BbvCI CCTCAGC 1 cut(s) 306
BbvI GCAGC 1 cut(s) 297
BccI CCATC 2 cut(s) 40, 796
BceAI ACGGC 1 cut(s) 900
BciT130I CCWGG 2 cut(s) 157, 1011
BclI TGATCA 1 cut(s) 997
BcoDI GTCTC 2 cut(s) 485, 837
BcuI ACTAGT 2 cut(s) 77, 389
BfaI CTAG 7 cut(s) 78, 203, 390, 495, 863, 867, 1182
BfoI RGCGCY 1 cut(s) 821
BfrI CTTAAG 1 cut(s) 112
BisI GCNGC 1 cut(s) 311
BlpI GCTNAGC 1 cut(s) 911
BlsI GCNGC 1 cut(s) 312
BmcAI AGTACT 2 cut(s) 232, 974
Bme1390I CCNGG 2 cut(s) 157, 1011
Bme18I GGWCC 2 cut(s) 892, 928
BmeT110I CYCGRG 1 cut(s) 697
BmgT120I GGNCC 2 cut(s) 892, 928
BmiI GGNNCC 1 cut(s) 161
BmrFI CCNGG 2 cut(s) 157, 1011
BmrI ACTGGG 1 cut(s) 1143
BmsI GCATC 2 cut(s) 189, 680
BmtI GCTAGC 2 cut(s) 206, 866
BmuI ACTGGG 1 cut(s) 1143
BpiI GAAGAC 1 cut(s) 1061
Bpu10I CCTNAGC 1 cut(s) 306
Bpu1102I GCTNAGC 1 cut(s) 911
BpuEI CTTGAG 3 cut(s) 228, 546, 749
BsaJI CCNNGG 2 cut(s) 132, 588
BsaXI ACNNNNNCTCC 4 cut(s) 223, 253, 1114, 1144
Bse118I RCCGGY 1 cut(s) 854
Bse1I ACTGG 3 cut(s) 1138, 1150, 1165
BseBI CCWGG 2 cut(s) 157, 1011
BseDI CCNNGG 2 cut(s) 132, 588
BseGI GGATG 2 cut(s) 198, 415
BseMII CTCAG 4 cut(s) 320, 386, 819, 925
BseNI ACTGG 3 cut(s) 1138, 1150, 1165
BseRI GAGGAG 5 cut(s) 152, 231, 411, 859, 1135
BseXI GCAGC 1 cut(s) 297
Bsh1236I CGCG 1 cut(s) 272
BshFI GGCC 2 cut(s) 137, 854
BsiHKAI GWGCWC 1 cut(s) 524
BsiHKCI CYCGRG 1 cut(s) 697
BsiSI CCGG 1 cut(s) 855
BslFI GGGAC 3 cut(s) 275, 951, 1150
BsmAI GTCTC 2 cut(s) 485, 837
BsmFI GGGAC 3 cut(s) 275, 951, 1150
BsmI GAATGC 2 cut(s) 647, 775
BsnI GGCC 2 cut(s) 137, 854
BsoBI CYCGRG 1 cut(s) 697
Bsp1286I GDGCHC 1 cut(s) 524
Bsp1407I TGTACA 1 cut(s) 333
Bsp143I GATC 4 cut(s) 247, 481, 997, 1013
Bsp1720I GCTNAGC 1 cut(s) 911
Bsp19I CCATGG 2 cut(s) 132, 588
BspACI CCGC 5 cut(s) 120, 144, 272, 895, 961
BspANI GGCC 2 cut(s) 137, 854
BspCNI CTCAG 4 cut(s) 319, 387, 820, 924
BspFNI CGCG 1 cut(s) 272
BspHI TCATGA 2 cut(s) 658, 840
BspLI GGNNCC 1 cut(s) 161
BspOI GCTAGC 2 cut(s) 206, 866
BspPI GGATC 1 cut(s) 1021
BspQI GCTCTTC 1 cut(s) 713
BspTI CTTAAG 1 cut(s) 112
BsrFI RCCGGY 1 cut(s) 854
BsrGI TGTACA 1 cut(s) 333
BsrI ACTGG 3 cut(s) 1138, 1150, 1165
BssAI RCCGGY 1 cut(s) 854
BssECI CCNNGG 2 cut(s) 132, 588
BssMI GATC 4 cut(s) 247, 481, 997, 1013
BssSI CACGAG 1 cut(s) 1059
BssT1I CCWWGG 2 cut(s) 132, 588
Bst2BI CACGAG 1 cut(s) 1059
Bst2UI CCWGG 2 cut(s) 157, 1011
Bst4CI ACNGT 3 cut(s) 215, 224, 362
Bst6I CTCTTC 5 cut(s) 180, 713, 801, 1020, 1112
BstAFI CTTAAG 1 cut(s) 112
BstAUI TGTACA 1 cut(s) 333
BstC8I GCNNGC 6 cut(s) 204, 279, 725, 822, 864, 908
BstDEI CTNAG 4 cut(s) 306, 395, 828, 911
BstDSI CCRYGG 2 cut(s) 132, 588
BstF5I GGATG 2 cut(s) 198, 415
BstFNI CGCG 1 cut(s) 272
BstH2I RGCGCY 1 cut(s) 821
BstHHI GCGC 1 cut(s) 820
BstKTI GATC 4 cut(s) 250, 484, 1000, 1016
BstMAI GTCTC 2 cut(s) 485, 837
BstMBI GATC 4 cut(s) 247, 481, 997, 1013
BstMWI GCNNNNNNNGC 5 cut(s) 143, 278, 614, 903, 912
BstNI CCWGG 2 cut(s) 157, 1011
BstNSI RCATGY 1 cut(s) 910
BstSCI CCNGG 2 cut(s) 155, 1009
BstUI CGCG 1 cut(s) 272
BstV1I GCAGC 1 cut(s) 297
BstV2I GAAGAC 1 cut(s) 1061
BsuRI GGCC 2 cut(s) 137, 854
BtgI CCRYGG 2 cut(s) 132, 588
BtsCI GGATG 2 cut(s) 198, 415
BtsIMutI CAGTG 1 cut(s) 1164
Cac8I GCNNGC 6 cut(s) 204, 279, 725, 822, 864, 908
CciI TCATGA 2 cut(s) 658, 840
CfoI GCGC 1 cut(s) 820
Cfr10I RCCGGY 1 cut(s) 854
Cfr13I GGNCC 2 cut(s) 892, 928
CseI GACGC 1 cut(s) 614
Csp6I GTAC 5 cut(s) 231, 334, 973, 1131, 1158
CviAII CATG 5 cut(s) 133, 589, 659, 841, 907
CviQI GTAC 5 cut(s) 231, 334, 973, 1131, 1158
DdeI CTNAG 4 cut(s) 306, 395, 828, 911
DpnI GATC 4 cut(s) 249, 483, 999, 1015
DpnII GATC 4 cut(s) 247, 481, 997, 1013
DrdI GACNNNNNNGTC 2 cut(s) 611, 899
DseDI GACNNNNNNGTC 2 cut(s) 611, 899
EaeI YGGCCR 1 cut(s) 135
Eam1104I CTCTTC 5 cut(s) 180, 713, 801, 1020, 1112
EarI CTCTTC 5 cut(s) 180, 713, 801, 1020, 1112
Ecl136II GAGCTC 1 cut(s) 522
Eco130I CCWWGG 2 cut(s) 132, 588
Eco24I GRGCYC 1 cut(s) 524
Eco32I GATATC 1 cut(s) 649
Eco47I GGWCC 2 cut(s) 892, 928
Eco47III AGCGCT 1 cut(s) 819
Eco53kI GAGCTC 1 cut(s) 522
Eco57I CTGAAG 2 cut(s) 303, 917
Eco88I CYCGRG 1 cut(s) 697
EcoICRI GAGCTC 1 cut(s) 522
EcoO109I RGGNCCY 1 cut(s) 928
EcoRII CCWGG 2 cut(s) 155, 1009
EcoRV GATATC 1 cut(s) 649
EcoT14I CCWWGG 2 cut(s) 132, 588
EcoT22I ATGCAT 1 cut(s) 673
EcoT38I GRGCYC 1 cut(s) 524
ErhI CCWWGG 2 cut(s) 132, 588
FaeI CATG 5 cut(s) 136, 592, 662, 844, 910
FalI AAGNNNNNCTT 2 cut(s) 95, 127
FaqI GGGAC 3 cut(s) 275, 951, 1150
FatI CATG 5 cut(s) 132, 588, 658, 840, 906
FbaI TGATCA 1 cut(s) 997
FblI GTMKAC 1 cut(s) 427
Fnu4HI GCNGC 1 cut(s) 311
FokI GGATG 2 cut(s) 205, 402
FriOI GRGCYC 1 cut(s) 524
Fsp4HI GCNGC 1 cut(s) 311
FspBI CTAG 7 cut(s) 78, 203, 390, 495, 863, 867, 1182
GlaI GCGC 1 cut(s) 819
GluI GCNGC 1 cut(s) 311
HaeII RGCGCY 1 cut(s) 821
HaeIII GGCC 2 cut(s) 137, 854
HapII CCGG 1 cut(s) 855
HgaI GACGC 1 cut(s) 614
HhaI GCGC 1 cut(s) 820
Hin1II CATG 5 cut(s) 136, 592, 662, 844, 910
Hin6I GCGC 1 cut(s) 818
HinP1I GCGC 1 cut(s) 818
HincII GTYRAC 2 cut(s) 428, 991
HindII GTYRAC 2 cut(s) 428, 991
HindIII AAGCTT 1 cut(s) 285
HinfI GANTC 7 cut(s) 65, 397, 506, 692, 740, 830, 1057
HpaII CCGG 1 cut(s) 855
HphI GGTGA 1 cut(s) 869
Hpy166II GTNNAC 3 cut(s) 428, 991, 1226
Hpy188I TCNGA 8 cut(s) 75, 358, 396, 402, 511, 676, 745, 829
Hpy188III TCNNGA 8 cut(s) 62, 245, 251, 326, 563, 659, 841, 1201
Hpy8I GTNNAC 3 cut(s) 428, 991, 1226
Hpy99I CGWCG 2 cut(s) 16, 429
HpyAV CCTTC 3 cut(s) 277, 844, 941
HpyCH4III ACNGT 3 cut(s) 215, 224, 362
HpyCH4IV ACGT 2 cut(s) 86, 1092
HpyCH4V TGCA 4 cut(s) 671, 715, 797, 1090
HpyF10VI GCNNNNNNNGC 5 cut(s) 143, 278, 614, 903, 912
HpyF3I CTNAG 4 cut(s) 306, 395, 828, 911
HpySE526I ACGT 2 cut(s) 86, 1092
Hsp92II CATG 5 cut(s) 136, 592, 662, 844, 910
HspAI GCGC 1 cut(s) 818
Ksp22I TGATCA 1 cut(s) 997
Kzo9I GATC 4 cut(s) 247, 481, 997, 1013
LguI GCTCTTC 1 cut(s) 713
LmnI GCTCC 4 cut(s) 165, 274, 527, 882
Lsp1109I GCAGC 1 cut(s) 297
LweI GCATC 2 cut(s) 189, 680
MaeI CTAG 7 cut(s) 78, 203, 390, 495, 863, 867, 1182
MaeII ACGT 2 cut(s) 86, 1092
MaeIII GTNAC 4 cut(s) 66, 218, 362, 782
MalI GATC 4 cut(s) 249, 483, 999, 1015
MboI GATC 4 cut(s) 247, 481, 997, 1013
MfeI CAATTG 1 cut(s) 609
MhlI GDGCHC 1 cut(s) 524
MlsI TGGCCA 1 cut(s) 137
MluCI AATT 5 cut(s) 54, 337, 539, 609, 776
MluNI TGGCCA 1 cut(s) 137
MlyI GAGTC 5 cut(s) 74, 406, 749, 839, 1051
MmeI TCCRAC 3 cut(s) 107, 192, 933
Mox20I TGGCCA 1 cut(s) 137
Mph1103I ATGCAT 1 cut(s) 673
MscI TGGCCA 1 cut(s) 137
MseI TTAA 3 cut(s) 113, 210, 1230
MslI CAYNNNNRTG 1 cut(s) 590
Msp20I TGGCCA 1 cut(s) 137
MspA1I CMGCKG 1 cut(s) 310
MspCI CTTAAG 1 cut(s) 112
MspI CCGG 1 cut(s) 855
MspR9I CCNGG 2 cut(s) 157, 1011
MunI CAATTG 1 cut(s) 609
Mva1269I GAATGC 2 cut(s) 647, 775
MvaI CCWGG 2 cut(s) 157, 1011
MvnI CGCG 1 cut(s) 272
MwoI GCNNNNNNNGC 5 cut(s) 143, 278, 614, 903, 912
NcoI CCATGG 2 cut(s) 132, 588
NdeII GATC 4 cut(s) 247, 481, 997, 1013
NheI GCTAGC 2 cut(s) 202, 862
NlaIII CATG 5 cut(s) 136, 592, 662, 844, 910
NlaIV GGNNCC 1 cut(s) 161
NmeAIII GCCGAG 1 cut(s) 643
NmuCI GTSAC 1 cut(s) 66
NsiI ATGCAT 1 cut(s) 673
NspI RCATGY 1 cut(s) 910
OliI CACNNNNGTG 1 cut(s) 590
PaeI GCATGC 1 cut(s) 910
PaeR7I CTCGAG 1 cut(s) 697
PagI TCATGA 2 cut(s) 658, 840
PciSI GCTCTTC 1 cut(s) 713
PctI GAATGC 2 cut(s) 647, 775
PfeI GAWTC 2 cut(s) 506, 692
PkrI GCNGC 1 cut(s) 312
PleI GAGTC 5 cut(s) 73, 405, 748, 838, 1051
PpsI GAGTC 5 cut(s) 73, 405, 748, 838, 1051
PpuMI RGGWCCY 1 cut(s) 928
Psp124BI GAGCTC 1 cut(s) 524
Psp1406I AACGTT 1 cut(s) 86
Psp5II RGGWCCY 1 cut(s) 928
Psp6I CCWGG 2 cut(s) 155, 1009
PspGI CCWGG 2 cut(s) 155, 1009
PspN4I GGNNCC 1 cut(s) 161
PspPI GGNCC 2 cut(s) 892, 928
PspPPI RGGWCCY 1 cut(s) 928
PspXI VCTCGAGB 1 cut(s) 697
PsrI GAACNNNNNNTAC 2 cut(s) 956, 988
PvuII CAGCTG 1 cut(s) 310
RsaI GTAC 5 cut(s) 232, 335, 974, 1132, 1159
RsaNI GTAC 5 cut(s) 231, 334, 973, 1131, 1158
RseI CAYNNNNRTG 1 cut(s) 590
SacI GAGCTC 1 cut(s) 524
SalI GTCGAC 1 cut(s) 426
SapI GCTCTTC 1 cut(s) 713
SaqAI TTAA 3 cut(s) 113, 210, 1230
SatI GCNGC 1 cut(s) 311
Sau3AI GATC 4 cut(s) 247, 481, 997, 1013
Sau96I GGNCC 2 cut(s) 892, 928
ScaI AGTACT 2 cut(s) 232, 974
SchI GAGTC 5 cut(s) 74, 406, 749, 839, 1051
ScrFI CCNGG 2 cut(s) 157, 1011
SduI GDGCHC 1 cut(s) 524
SfaNI GCATC 2 cut(s) 189, 680
Sfr274I CTCGAG 1 cut(s) 697
SinI GGWCC 2 cut(s) 892, 928
SlaI CTCGAG 1 cut(s) 697
SmiMI CAYNNNNRTG 1 cut(s) 590
SmlI CTYRAG 5 cut(s) 112, 243, 561, 697, 728
SmoI CTYRAG 5 cut(s) 112, 243, 561, 697, 728
SpeI ACTAGT 2 cut(s) 77, 389
SphI GCATGC 1 cut(s) 910
Sse9I AATT 5 cut(s) 54, 337, 539, 609, 776
SsiI CCGC 5 cut(s) 120, 144, 272, 895, 961
SspMI CTAG 7 cut(s) 78, 203, 390, 495, 863, 867, 1182
SstI GAGCTC 1 cut(s) 524
StyD4I CCNGG 2 cut(s) 155, 1009
StyI CCWWGG 2 cut(s) 132, 588
TaaI ACNGT 3 cut(s) 215, 224, 362
TaiI ACGT 2 cut(s) 89, 1095
TaqI TCGA 2 cut(s) 427, 698
TasI AATT 5 cut(s) 54, 337, 539, 609, 776
TatI WGTACW 3 cut(s) 230, 333, 972
TfiI GAWTC 2 cut(s) 506, 692
Tru1I TTAA 3 cut(s) 113, 210, 1230
Tru9I TTAA 3 cut(s) 113, 210, 1230
TscAI CASTG 1 cut(s) 1171
TseFI GTSAC 1 cut(s) 66
TseI GCWGC 1 cut(s) 310
Tsp45I GTSAC 1 cut(s) 66
TspDTI ATGAA 7 cut(s) 47, 209, 404, 647, 705, 829, 1130
TspRI CASTG 1 cut(s) 1171
Vha464I CTTAAG 1 cut(s) 112
VpaK11BI GGWCC 2 cut(s) 892, 928
XapI RAATTY 1 cut(s) 54
XceI RCATGY 1 cut(s) 910
XhoI CTCGAG 1 cut(s) 697
XmiI GTMKAC 1 cut(s) 427
XspI CTAG 7 cut(s) 78, 203, 390, 495, 863, 867, 1182
ZrmI AGTACT 2 cut(s) 232, 974
Zsp2I ATGCAT 1 cut(s) 673
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.