Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0002133

Physical Location & Seq

Genomic Coordinates Reverse (-)

18224556 .. 18228210

Gene Structure 3655 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G242300.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1227 bp

ATGAGGACACCGGAGAAACCAATAATAATGTCGGCTTCCATTCACTCAGCTCCAACTCCAACTCCAAGACGGAGGAGCTTAAGCAGTAGCAGCAGCAGCAATAAAAGTTGCACCACCACCTCCACCGACCCCTCCACCATGAAACCCAAATGGCTTTTGTCCATCCTTGCTGATGTGGAAGAGAAGATGAAGATGTTGGGATGTAGCAGAGCCACAGCTCAACAAGAGATTGGGGACACCTTCGCTGAACGAGCTGAAGCTTACTACAAAAGACGTCCTCAGCTCCTCTCCCTGCTTCGAGACTTGTACAATTCCTACCTCACCTTATCTGACCGTTACATTCAAACTGTCGCCAAGACTCAGCATCACCGTCCACCCTCTTCCCAAATCTCAGTAATAGATAATGACTACTATGACTATGACGACCAAGAAGAAGAAGAAGATGATGCTTACACAAGCCACATTGATTCGGACGTAGAGAGTTCCCTCTCCTATCAGCAATTGCCTCCAACATTACTACTCGCTGCTTCTGTTGCTACTCAACATGATGAGACCATGTTGTTTGATTTAGATTCCATCGTTACGGAGATTGTGGTGAAGAATGTCGAATATGATATCTTACTTGATGAGGCCAACATGACGGAGAGGCGATACAAGGATGCATCCAGGAAGATAGAGCTGCAGAAGAGCTTGCTAGAGGTGTTGGAGTCTGAGAGGCTCATCTTGCTCAATGAGAATGCCAAGTTGGGGTATAAAGTGGGTGCCTTGGTGGAAGAGAACAAAGCCCTTGCGTCCGAGTCTCTCTTCATCAGGAGGAAGGCTGGCGAGCTAGCTCGCTGTTTGCTCAAGACGAGGGAAGACCAGAGGGTGTGCATGCTTAGCCGTAAAATCGAGGACCTTCAGGGACAGATTTATGGCTTGGAGAAGAGGAACAAGGACTACTATGAGCAACTTGTGAAGAGAGACCAACGATCCTTTCAACTTGTACAAGAAGAAGAAGAGAGTTGCAACATCAACAAGAGCAAGATAAATGGTAATCAGGTGAATTTGGAGGTTTGCTTTCAGATACGGAAGATTAATCGGAGGCTGATAAAGAGAGGTAATAGTAATGGTAGTGGGAAGGAGATTGGCGTCGGAAAGGAGAAGAAGGGTTCTTCTTCCAGTTTGTGGGAAAGGGTCAAGAACATGGATTTGTTTCTATGTGGAGGTAATCAAAACTCTACGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KIP1

Protein Analysis

409

Amino Acids

46.58

Weight (kDa)

6.11

Isoelectric Point (pI)

64.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002133)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48405 AT3G17680 AT3G17680 AT3G17680
fragaria_vesca	FvH4_5g18280 FvH4_5g18280 FvH4_5g18280 FvH4_5g18280 FvH4_5g18280 FvH4_5g18290
malus_domestica	MD06G1238400.v1.1 MD06G1238700.v1.1 MD14G1244700.v1.1 MD14G1244900.v1.1
prunus_persica	Prupe.5G242300_v2.0.a1 Prupe.5G242300_v2.0.a1 Prupe.5G242300_v2.0.a1 Prupe.5G242300_v2.0.a1 Prupe.5G242300_v2.0.a1 Prupe.5G242300_v2.0.a1 Prupe.5G242600_v2.0.a1
pyrus_communis	pycom06g21390 pycom06g21420 pycom14g20590
rosa_chinensis	RchiOBHm_Chr7g0177291 RchiOBHm_Chr7g0177301
rosa_laevigata	RLG00000005548
rosa_multiflora	Rmu_sc0005310.1_g000008
rosa_roxburghii	Rroxscaffold_3G00275960 Rroxscaffold_3G00275970
rosa_rugosa	Rorug06G0404500 Rorug06G0404600 Rorug06G0404700 Rorug06G0404800
rosa_samantha	Rh7AG004500 Rh7AG004600 Rh7BG004400 Rh7BG004500 Rh7CG004300 Rh7CG004400 Rh7DG004300 Rh7DG004400
rosa_wichuraiana	Rw7G000370 Rw7G000380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	277
AccB1I	GGYRCC	1 cut(s)	761
AccB7I	CCANNNNNTGG	1 cut(s)	1167
AclWI	GGATC	1 cut(s)	966
AcsI	RAATTY	1 cut(s)	1045
AcuI	CTGAAG	2 cut(s)	276, 884
AcyI	GRCGYC	2 cut(s)	274, 1131
AfaI	GTAC	2 cut(s)	308, 987
AfiI	CCNNNNNNNGG	2 cut(s)	747, 1167
AflII	CTTAAG	1 cut(s)	79
AgsI	TTSAA	2 cut(s)	344, 980
AjnI	CCWGG	1 cut(s)	665
AjuI	GAANNNNNNNTTGG	4 cut(s)	728, 760, 960, 992
Alw26I	GTCTC	4 cut(s)	294, 545, 804, 957
AlwI	GGATC	1 cut(s)	966
AoxI	GGCC	1 cut(s)	630
ApeKI	GCWGC	5 cut(s)	90, 93, 96, 524, 679
ApoI	RAATTY	1 cut(s)	1045
AseI	ATTAAT	1 cut(s)	1077
AspS9I	GGNCC	1 cut(s)	895
AsuHPI	GGTGA	4 cut(s)	313, 359, 607, 1054
AsuNHI	GCTAGC	1 cut(s)	829
AvaII	GGWCC	1 cut(s)	895
BanI	GGYRCC	1 cut(s)	761
BbsI	GAAGAC	1 cut(s)	864
BbvCI	CCTCAGC	1 cut(s)	279
BbvI	GCAGC	5 cut(s)	102, 105, 108, 511, 666
BccI	CCATC	2 cut(s)	170, 584
BceAI	ACGGC	1 cut(s)	867
BciT130I	CCWGG	1 cut(s)	667
BcoDI	GTCTC	4 cut(s)	294, 545, 804, 957
BfaI	CTAG	2 cut(s)	695, 830
BfmI	CTRYAG	1 cut(s)	680
BfrI	CTTAAG	1 cut(s)	79
BisI	GCNGC	5 cut(s)	91, 94, 97, 525, 680
BlpI	GCTNAGC	1 cut(s)	878
BlsI	GCNGC	5 cut(s)	92, 95, 98, 526, 681
Bme1390I	CCNGG	1 cut(s)	667
Bme18I	GGWCC	1 cut(s)	895
BmgT120I	GGNCC	1 cut(s)	895
BmiI	GGNNCC	1 cut(s)	763
BmrFI	CCNGG	1 cut(s)	667
BmsI	GCATC	4 cut(s)	373, 436, 649, 671
BmtI	GCTAGC	1 cut(s)	833
BpiI	GAAGAC	1 cut(s)	864
Bpu10I	CCTNAGC	1 cut(s)	279
Bpu1102I	GCTNAGC	1 cut(s)	878
BpuEI	CTTGAG	1 cut(s)	830
BsaAI	YACGTR	1 cut(s)	1224
BsaHI	GRCGYC	2 cut(s)	274, 1131
BsaI	GGTCTC	2 cut(s)	545, 957
BsaJI	CCNNGG	1 cut(s)	765
BsaWI	WCCGGW	1 cut(s)	10
BsaXI	ACNNNNNCTCC	2 cut(s)	46, 76
Bsc4I	CCNNNNNNNGG	2 cut(s)	747, 1167
Bse1I	ACTGG	1 cut(s)	1161
BseBI	CCWGG	1 cut(s)	667
BseDI	CCNNGG	1 cut(s)	765
BseGI	GGATG	4 cut(s)	162, 206, 662, 664
BseLI	CCNNNNNNNGG	2 cut(s)	747, 1167
BseMII	CTCAG	5 cut(s)	60, 293, 374, 405, 702
BseNI	ACTGG	1 cut(s)	1161
BseRI	GAGGAG	2 cut(s)	88, 275
BseXI	GCAGC	5 cut(s)	102, 105, 108, 511, 666
BshFI	GGCC	1 cut(s)	632
BshNI	GGYRCC	1 cut(s)	761
BsiSI	CCGG	1 cut(s)	11
BslFI	GGGAC	2 cut(s)	248, 918
BslI	CCNNNNNNNGG	2 cut(s)	747, 1167
BsmAI	GTCTC	4 cut(s)	294, 545, 804, 957
BsmFI	GGGAC	2 cut(s)	248, 918
BsmI	GAATGC	1 cut(s)	742
BsnI	GGCC	1 cut(s)	632
Bso31I	GGTCTC	2 cut(s)	545, 957
Bsp1407I	TGTACA	2 cut(s)	306, 985
Bsp143I	GATC	1 cut(s)	971
Bsp1720I	GCTNAGC	1 cut(s)	878
BspANI	GGCC	1 cut(s)	632
BspCNI	CTCAG	5 cut(s)	59, 292, 373, 404, 703
BspLI	GGNNCC	1 cut(s)	763
BspMAI	CTGCAG	1 cut(s)	684
BspOI	GCTAGC	1 cut(s)	833
BspPI	GGATC	1 cut(s)	966
BspQI	GCTCTTC	1 cut(s)	680
BspT107I	GGYRCC	1 cut(s)	761
BspTI	CTTAAG	1 cut(s)	79
BspTNI	GGTCTC	2 cut(s)	545, 957
BsrGI	TGTACA	2 cut(s)	306, 985
BsrI	ACTGG	1 cut(s)	1161
BssECI	CCNNGG	1 cut(s)	765
BssMI	GATC	1 cut(s)	971
BssNI	GRCGYC	2 cut(s)	274, 1131
BssT1I	CCWWGG	1 cut(s)	765
Bst2UI	CCWGG	1 cut(s)	667
Bst4CI	ACNGT	3 cut(s)	335, 349, 371
Bst6I	CTCTTC	8 cut(s)	174, 385, 680, 768, 809, 920, 953, 993
BstACI	GRCGYC	2 cut(s)	274, 1131
BstAFI	CTTAAG	1 cut(s)	79
BstAUI	TGTACA	2 cut(s)	306, 985
BstBAI	YACGTR	1 cut(s)	1224
BstC8I	GCNNGC	6 cut(s)	692, 823, 827, 831, 835, 875
BstDEI	CTNAG	6 cut(s)	46, 279, 360, 391, 711, 878
BstF5I	GGATG	4 cut(s)	162, 206, 662, 664
BstKTI	GATC	1 cut(s)	974
BstMAI	GTCTC	4 cut(s)	294, 545, 804, 957
BstMBI	GATC	1 cut(s)	971
BstMWI	GCNNNNNNNGC	6 cut(s)	90, 96, 251, 533, 724, 879
BstNI	CCWGG	1 cut(s)	667
BstNSI	RCATGY	1 cut(s)	877
BstSCI	CCNGG	1 cut(s)	665
BstSFI	CTRYAG	1 cut(s)	680
BstSNI	TACGTA	1 cut(s)	1224
BstV1I	GCAGC	5 cut(s)	102, 105, 108, 511, 666
BstV2I	GAAGAC	1 cut(s)	864
BsuRI	GGCC	1 cut(s)	632
BtsCI	GGATG	4 cut(s)	162, 206, 662, 664
Cac8I	GCNNGC	6 cut(s)	692, 823, 827, 831, 835, 875
Cfr13I	GGNCC	1 cut(s)	895
CseI	GACGC	2 cut(s)	780, 1120
Csp6I	GTAC	2 cut(s)	307, 986
CviAII	CATG	6 cut(s)	139, 545, 556, 637, 874, 1186
CviQI	GTAC	2 cut(s)	307, 986
DdeI	CTNAG	6 cut(s)	46, 279, 360, 391, 711, 878
DpnI	GATC	1 cut(s)	973
DpnII	GATC	1 cut(s)	971
Eam1104I	CTCTTC	8 cut(s)	174, 385, 680, 768, 809, 920, 953, 993
EarI	CTCTTC	8 cut(s)	174, 385, 680, 768, 809, 920, 953, 993
Eco105I	TACGTA	1 cut(s)	1224
Eco130I	CCWWGG	1 cut(s)	765
Eco31I	GGTCTC	2 cut(s)	545, 957
Eco32I	GATATC	1 cut(s)	616
Eco47I	GGWCC	1 cut(s)	895
Eco57I	CTGAAG	2 cut(s)	276, 884
EcoO109I	RGGNCCY	1 cut(s)	895
EcoRII	CCWGG	1 cut(s)	665
EcoRV	GATATC	1 cut(s)	616
EcoT14I	CCWWGG	1 cut(s)	765
EcoT22I	ATGCAT	1 cut(s)	664
ErhI	CCWWGG	1 cut(s)	765
FaeI	CATG	6 cut(s)	142, 548, 559, 640, 877, 1189
FaqI	GGGAC	2 cut(s)	248, 918
FatI	CATG	6 cut(s)	138, 544, 555, 636, 873, 1185
Fnu4HI	GCNGC	5 cut(s)	91, 94, 97, 525, 680
FokI	GGATG	4 cut(s)	149, 213, 649, 671
Fsp4HI	GCNGC	5 cut(s)	91, 94, 97, 525, 680
FspBI	CTAG	2 cut(s)	695, 830
GluI	GCNGC	5 cut(s)	91, 94, 97, 525, 680
HaeIII	GGCC	1 cut(s)	632
HapII	CCGG	1 cut(s)	11
HgaI	GACGC	2 cut(s)	780, 1120
Hin1I	GRCGYC	2 cut(s)	274, 1131
Hin1II	CATG	6 cut(s)	142, 548, 559, 640, 877, 1189
HindIII	AAGCTT	1 cut(s)	258
HinfI	GANTC	5 cut(s)	358, 467, 572, 707, 797
HpaII	CCGG	1 cut(s)	11
HphI	GGTGA	4 cut(s)	313, 359, 607, 1054
Hpy166II	GTNNAC	1 cut(s)	374
Hpy188I	TCNGA	7 cut(s)	331, 472, 712, 796, 1065, 1083, 1136
Hpy188III	TCNNGA	4 cut(s)	299, 811, 847, 1180
Hpy8I	GTNNAC	1 cut(s)	374
Hpy99I	CGWCG	1 cut(s)	1136
HpyAV	CCTTC	5 cut(s)	250, 811, 908, 1114, 1141
HpyCH4III	ACNGT	3 cut(s)	335, 349, 371
HpyCH4IV	ACGT	3 cut(s)	274, 474, 1223
HpyCH4V	TGCA	5 cut(s)	111, 662, 682, 873, 1008
HpyF10VI	GCNNNNNNNGC	6 cut(s)	90, 96, 251, 533, 724, 879
HpyF3I	CTNAG	6 cut(s)	46, 279, 360, 391, 711, 878
HpySE526I	ACGT	3 cut(s)	274, 474, 1223
Hsp92I	GRCGYC	2 cut(s)	274, 1131
Hsp92II	CATG	6 cut(s)	142, 548, 559, 640, 877, 1189
Kzo9I	GATC	1 cut(s)	971
LguI	GCTCTTC	1 cut(s)	680
LmnI	GCTCC	3 cut(s)	55, 75, 288
Lsp1109I	GCAGC	5 cut(s)	102, 105, 108, 511, 666
LweI	GCATC	4 cut(s)	373, 436, 649, 671
MaeI	CTAG	2 cut(s)	695, 830
MaeII	ACGT	3 cut(s)	274, 474, 1223
MaeIII	GTNAC	2 cut(s)	335, 580
MalI	GATC	1 cut(s)	973
MboI	GATC	1 cut(s)	971
MfeI	CAATTG	1 cut(s)	500
MluCI	AATT	3 cut(s)	310, 500, 1045
MlyI	GAGTC	3 cut(s)	352, 716, 806
MmeI	TCCRAC	5 cut(s)	77, 83, 533, 684, 1114
Mph1103I	ATGCAT	1 cut(s)	664
MseI	TTAA	2 cut(s)	80, 1077
MspCI	CTTAAG	1 cut(s)	79
MspI	CCGG	1 cut(s)	11
MspR9I	CCNGG	1 cut(s)	667
MunI	CAATTG	1 cut(s)	500
Mva1269I	GAATGC	1 cut(s)	742
MvaI	CCWGG	1 cut(s)	667
MwoI	GCNNNNNNNGC	6 cut(s)	90, 96, 251, 533, 724, 879
NdeII	GATC	1 cut(s)	971
NheI	GCTAGC	1 cut(s)	829
NlaIII	CATG	6 cut(s)	142, 548, 559, 640, 877, 1189
NlaIV	GGNNCC	1 cut(s)	763
NsiI	ATGCAT	1 cut(s)	664
NspI	RCATGY	1 cut(s)	877
PaeI	GCATGC	1 cut(s)	877
PciSI	GCTCTTC	1 cut(s)	680
PctI	GAATGC	1 cut(s)	742
PfeI	GAWTC	2 cut(s)	467, 572
PflMI	CCANNNNNTGG	1 cut(s)	1167
PfoI	TCCNGGA	1 cut(s)	665
PkrI	GCNGC	5 cut(s)	92, 95, 98, 526, 681
PleI	GAGTC	3 cut(s)	352, 715, 805
PpsI	GAGTC	3 cut(s)	352, 715, 805
Ppu21I	YACGTR	1 cut(s)	1224
PpuMI	RGGWCCY	1 cut(s)	895
PshBI	ATTAAT	1 cut(s)	1077
Psp5II	RGGWCCY	1 cut(s)	895
Psp6I	CCWGG	1 cut(s)	665
PspGI	CCWGG	1 cut(s)	665
PspN4I	GGNNCC	1 cut(s)	763
PspPI	GGNCC	1 cut(s)	895
PspPPI	RGGWCCY	1 cut(s)	895
PsrI	GAACNNNNNNTAC	2 cut(s)	923, 955
PstI	CTGCAG	1 cut(s)	684
RsaI	GTAC	2 cut(s)	308, 987
RsaNI	GTAC	2 cut(s)	307, 986
SapI	GCTCTTC	1 cut(s)	680
SaqAI	TTAA	2 cut(s)	80, 1077
SatI	GCNGC	5 cut(s)	91, 94, 97, 525, 680
Sau3AI	GATC	1 cut(s)	971
Sau96I	GGNCC	1 cut(s)	895
SchI	GAGTC	3 cut(s)	352, 716, 806
ScrFI	CCNGG	1 cut(s)	667
SfaNI	GCATC	4 cut(s)	373, 436, 649, 671
SfcI	CTRYAG	1 cut(s)	680
SinI	GGWCC	1 cut(s)	895
SmlI	CTYRAG	2 cut(s)	79, 845
SmoI	CTYRAG	2 cut(s)	79, 845
SnaBI	TACGTA	1 cut(s)	1224
SphI	GCATGC	1 cut(s)	877
Sse9I	AATT	3 cut(s)	310, 500, 1045
SspMI	CTAG	2 cut(s)	695, 830
StyD4I	CCNGG	1 cut(s)	665
StyI	CCWWGG	1 cut(s)	765
TaaI	ACNGT	3 cut(s)	335, 349, 371
TaiI	ACGT	3 cut(s)	277, 477, 1226
TaqI	TCGA	3 cut(s)	298, 606, 891
TasI	AATT	3 cut(s)	310, 500, 1045
TatI	WGTACW	2 cut(s)	306, 985
TfiI	GAWTC	2 cut(s)	467, 572
Tru1I	TTAA	2 cut(s)	80, 1077
Tru9I	TTAA	2 cut(s)	80, 1077
TseI	GCWGC	5 cut(s)	90, 93, 96, 524, 679
TspDTI	ATGAA	3 cut(s)	155, 203, 796
TspGWI	ACGGA	4 cut(s)	85, 599, 656, 1084
Van91I	CCANNNNNTGG	1 cut(s)	1167
Vha464I	CTTAAG	1 cut(s)	79
VpaK11BI	GGWCC	1 cut(s)	895
VspI	ATTAAT	1 cut(s)	1077
XapI	RAATTY	1 cut(s)	1045
XceI	RCATGY	1 cut(s)	877
XspI	CTAG	2 cut(s)	695, 830
ZraI	GACGTC	1 cut(s)	275
Zsp2I	ATGCAT	1 cut(s)	664

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.