Rh7AG004600

KIP1-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0002133
Physical Location & Seq
Forward (+)
336142 .. 339522
3381 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG004600.1

Sequence Viewer

Length: 1248 bp
ATGGAGAAACCGACGACACCACCACCATCATCATCATCAGCTTCTTCTGTTCAAATTCATCAGGAGTCAGTTCCGACTAGTCCAACGTTGTCAAGCACAAGGAAGATGAGCTTAAGCCCCGCCCCGACCACCATGGCCACCACCGCCAAACCGACCTGGCTCCTCTCCAACCTCGCCGATGTGGAAGAGAGGATGAAGATGCTAGTATTTAACAGTAACAGTAAAAGTACTAAAACTCCTCAAGATCAAGACAATGGGGACACCTTCGCGGAGCGAGCTGAAGCGTACTACAAAACACGCCCTCAGCTGCTATCCCTACTTCAAGACTTGTACAATTCCTATCTCACTCTCTCTGACCGTTACATTCAAACAATTGCCAAAACTACTAGTCTGAGTCAGAGTCAGATTTTTCATCCTCCTCGTCGACAATCTTCTCAAACCTCAACCATTGAATACTATGATTACTATGACCAGCAAGATCAATATGAGACTAGCCAGAATGATTCAGATGTGGAGAGCTCCCTCTCGTATCAGCAATTTCCCACATCACTTCTTGCTCAAGATGATGATGATGATGATACCACCATGGTGTCAAGTTTTGACGCAATTGTCGCGGAGATTGTGATAAAAAATGTGGAATGCGATATCCTACTTCATGAGGTCAATGCATCGGAGAGGCAACAAAATGAATCATCGAGGAAGATAGAGTTGCAGAAGAGCTTGCTTGAGGTTTTGGAGTCTGAAAGGCTCATACTACTGAATGAGAATGCTAAATTGGGTTACAGAGTGGGTGCATTGATGGAAGAGAACAAAGCGCTTGCCTCCGAGTCTCTGTTCATGAGGAGGAAGGCCGGTGAGCTAGCTAGGTATTTGCTCCAAATGAGAGAGGACCGCAGGGTCAGCATGCTCAGCCGTAAGATAGAGGACCTTCAGGGACAGATTTATGGGTTGGAGAAGCGGAACAAGGAGTACTACCAGCAACTTGTCAACAATGATCACTCACAACCAGGATCACTTGAAGAAGAGAAGAATAGTAGCAACAACAAGAAGAAGACTCGTGGTAGAAGTAGTAATGAGGTGGATTTGCACGTTTGCTTTCAAATAGGAAAGATGAAGAGGAGAGGTGGTACTGGGACGAGGACTGGTACGAGGGGTACTGGCACTGACAAGAAAGGTTCTAGTTGGTGGGGAAAGGTCAAGAACATAGACTTGTTTCTATGTGGACTTAACCCAACTTCTACTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KIP1

Protein Analysis

415

Amino Acids

46.95

Weight (kDa)

5.91

Isoelectric Point (pI)

59.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KIP1 PF07765 48 - 121 1.4e-10 KIP1-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 608, 896
AccI GTMKAC 1 cut(s) 424
AccII CGCG 2 cut(s) 269, 614
AciI CCGC 6 cut(s) 120, 144, 269, 614, 892, 958
AclI AACGTT 1 cut(s) 86
AclWI GGATC 1 cut(s) 1018
AcoI YGGCCR 1 cut(s) 135
AcsI RAATTY 1 cut(s) 54
AcuI CTGAAG 2 cut(s) 300, 914
AfaI GTAC 7 cut(s) 229, 287, 332, 971, 1129, 1147, 1156
AfeI AGCGCT 1 cut(s) 816
AflII CTTAAG 1 cut(s) 112
AgsI TTSAA 6 cut(s) 53, 323, 368, 452, 1019, 1100
AhlI ACTAGT 2 cut(s) 77, 386
AjnI CCWGG 2 cut(s) 155, 1006
AjuI GAANNNNNNNTTGG 2 cut(s) 758, 790
AleI CACNNNNGTG 1 cut(s) 587
AluBI AGCT 8 cut(s) 41, 111, 278, 307, 519, 720, 859, 863
AluI AGCT 8 cut(s) 41, 111, 278, 307, 519, 720, 859, 863
Alw21I GWGCWC 1 cut(s) 521
Alw26I GTCTC 2 cut(s) 482, 834
AlwI GGATC 1 cut(s) 1018
Aor51HI AGCGCT 1 cut(s) 816
AoxI GGCC 2 cut(s) 135, 849
ApeKI GCWGC 1 cut(s) 307
ApoI RAATTY 1 cut(s) 54
AspLEI GCGC 1 cut(s) 817
AspS9I GGNCC 2 cut(s) 889, 925
AsuHPI GGTGA 1 cut(s) 866
AsuNHI GCTAGC 1 cut(s) 859
AvaII GGWCC 2 cut(s) 889, 925
BalI TGGCCA 1 cut(s) 137
BanII GRGCYC 1 cut(s) 521
BauI CACGAG 1 cut(s) 1056
BbsI GAAGAC 1 cut(s) 1058
Bbv12I GWGCWC 1 cut(s) 521
BbvCI CCTCAGC 1 cut(s) 303
BbvI GCAGC 1 cut(s) 294
BccI CCATC 2 cut(s) 34, 793
BceAI ACGGC 1 cut(s) 897
BciT130I CCWGG 2 cut(s) 157, 1008
BclI TGATCA 1 cut(s) 994
BcoDI GTCTC 2 cut(s) 482, 834
BcuI ACTAGT 2 cut(s) 77, 386
BfaI CTAG 7 cut(s) 78, 203, 387, 492, 860, 864, 1179
BfoI RGCGCY 1 cut(s) 818
BfrI CTTAAG 1 cut(s) 112
BisI GCNGC 1 cut(s) 308
BlpI GCTNAGC 1 cut(s) 908
BlsI GCNGC 1 cut(s) 309
BmcAI AGTACT 2 cut(s) 229, 971
Bme1390I CCNGG 2 cut(s) 157, 1008
Bme18I GGWCC 2 cut(s) 889, 925
BmgT120I GGNCC 2 cut(s) 889, 925
BmiI GGNNCC 1 cut(s) 161
BmrFI CCNGG 2 cut(s) 157, 1008
BmrI ACTGGG 1 cut(s) 1140
BmsI GCATC 2 cut(s) 189, 677
BmtI GCTAGC 1 cut(s) 863
BmuI ACTGGG 1 cut(s) 1140
BpiI GAAGAC 1 cut(s) 1058
Bpu10I CCTNAGC 1 cut(s) 303
Bpu1102I GCTNAGC 1 cut(s) 908
BpuEI CTTGAG 3 cut(s) 225, 543, 746
BsaJI CCNNGG 2 cut(s) 132, 585
BsaXI ACNNNNNCTCC 4 cut(s) 220, 250, 1111, 1141
Bse118I RCCGGY 1 cut(s) 851
Bse1I ACTGG 3 cut(s) 1135, 1147, 1162
BseBI CCWGG 2 cut(s) 157, 1008
BseDI CCNNGG 2 cut(s) 132, 585
BseGI GGATG 2 cut(s) 198, 412
BseMII CTCAG 3 cut(s) 317, 383, 922
BseNI ACTGG 3 cut(s) 1135, 1147, 1162
BseRI GAGGAG 5 cut(s) 152, 228, 408, 856, 1132
BseXI GCAGC 1 cut(s) 294
Bsh1236I CGCG 2 cut(s) 269, 614
BshFI GGCC 2 cut(s) 137, 851
BsiHKAI GWGCWC 1 cut(s) 521
BsiSI CCGG 1 cut(s) 852
BslFI GGGAC 3 cut(s) 272, 948, 1147
BsmAI GTCTC 2 cut(s) 482, 834
BsmFI GGGAC 3 cut(s) 272, 948, 1147
BsmI GAATGC 2 cut(s) 644, 772
BsnI GGCC 2 cut(s) 137, 851
Bsp1286I GDGCHC 1 cut(s) 521
Bsp1407I TGTACA 1 cut(s) 330
Bsp143I GATC 4 cut(s) 244, 478, 994, 1010
Bsp1720I GCTNAGC 1 cut(s) 908
Bsp19I CCATGG 2 cut(s) 132, 585
BspACI CCGC 6 cut(s) 120, 144, 269, 614, 892, 958
BspANI GGCC 2 cut(s) 137, 851
BspCNI CTCAG 3 cut(s) 316, 384, 921
BspFNI CGCG 2 cut(s) 269, 614
BspHI TCATGA 2 cut(s) 655, 837
BspLI GGNNCC 1 cut(s) 161
BspOI GCTAGC 1 cut(s) 863
BspPI GGATC 1 cut(s) 1018
BspQI GCTCTTC 1 cut(s) 710
BspTI CTTAAG 1 cut(s) 112
BsrFI RCCGGY 1 cut(s) 851
BsrGI TGTACA 1 cut(s) 330
BsrI ACTGG 3 cut(s) 1135, 1147, 1162
BssAI RCCGGY 1 cut(s) 851
BssECI CCNNGG 2 cut(s) 132, 585
BssMI GATC 4 cut(s) 244, 478, 994, 1010
BssSI CACGAG 1 cut(s) 1056
BssT1I CCWWGG 2 cut(s) 132, 585
Bst2BI CACGAG 1 cut(s) 1056
Bst2UI CCWGG 2 cut(s) 157, 1008
Bst4CI ACNGT 3 cut(s) 215, 221, 359
Bst6I CTCTTC 5 cut(s) 180, 710, 798, 1017, 1109
BstAFI CTTAAG 1 cut(s) 112
BstAUI TGTACA 1 cut(s) 330
BstC8I GCNNGC 5 cut(s) 276, 722, 819, 861, 905
BstDEI CTNAG 3 cut(s) 303, 392, 908
BstDSI CCRYGG 2 cut(s) 132, 585
BstF5I GGATG 2 cut(s) 198, 412
BstFNI CGCG 2 cut(s) 269, 614
BstH2I RGCGCY 1 cut(s) 818
BstHHI GCGC 1 cut(s) 817
BstKTI GATC 4 cut(s) 247, 481, 997, 1013
BstMAI GTCTC 2 cut(s) 482, 834
BstMBI GATC 4 cut(s) 244, 478, 994, 1010
BstMWI GCNNNNNNNGC 5 cut(s) 143, 275, 611, 900, 909
BstNI CCWGG 2 cut(s) 157, 1008
BstNSI RCATGY 1 cut(s) 907
BstSCI CCNGG 2 cut(s) 155, 1006
BstUI CGCG 2 cut(s) 269, 614
BstV1I GCAGC 1 cut(s) 294
BstV2I GAAGAC 1 cut(s) 1058
BsuRI GGCC 2 cut(s) 137, 851
BtgI CCRYGG 2 cut(s) 132, 585
BtsCI GGATG 2 cut(s) 198, 412
BtsIMutI CAGTG 1 cut(s) 1161
Cac8I GCNNGC 5 cut(s) 276, 722, 819, 861, 905
CciI TCATGA 2 cut(s) 655, 837
CfoI GCGC 1 cut(s) 817
Cfr10I RCCGGY 1 cut(s) 851
Cfr13I GGNCC 2 cut(s) 889, 925
CseI GACGC 1 cut(s) 611
Csp6I GTAC 7 cut(s) 228, 286, 331, 970, 1128, 1146, 1155
CviAII CATG 5 cut(s) 133, 586, 656, 838, 904
CviQI GTAC 7 cut(s) 228, 286, 331, 970, 1128, 1146, 1155
DdeI CTNAG 3 cut(s) 303, 392, 908
DpnI GATC 4 cut(s) 246, 480, 996, 1012
DpnII GATC 4 cut(s) 244, 478, 994, 1010
DrdI GACNNNNNNGTC 2 cut(s) 608, 896
DseDI GACNNNNNNGTC 2 cut(s) 608, 896
EaeI YGGCCR 1 cut(s) 135
Eam1104I CTCTTC 5 cut(s) 180, 710, 798, 1017, 1109
EarI CTCTTC 5 cut(s) 180, 710, 798, 1017, 1109
Ecl136II GAGCTC 1 cut(s) 519
Eco130I CCWWGG 2 cut(s) 132, 585
Eco24I GRGCYC 1 cut(s) 521
Eco32I GATATC 1 cut(s) 646
Eco47I GGWCC 2 cut(s) 889, 925
Eco47III AGCGCT 1 cut(s) 816
Eco53kI GAGCTC 1 cut(s) 519
Eco57I CTGAAG 2 cut(s) 300, 914
EcoICRI GAGCTC 1 cut(s) 519
EcoO109I RGGNCCY 1 cut(s) 925
EcoRII CCWGG 2 cut(s) 155, 1006
EcoRV GATATC 1 cut(s) 646
EcoT14I CCWWGG 2 cut(s) 132, 585
EcoT22I ATGCAT 1 cut(s) 670
EcoT38I GRGCYC 1 cut(s) 521
ErhI CCWWGG 2 cut(s) 132, 585
FaeI CATG 5 cut(s) 136, 589, 659, 841, 907
FalI AAGNNNNNCTT 2 cut(s) 95, 127
FaqI GGGAC 3 cut(s) 272, 948, 1147
FatI CATG 5 cut(s) 132, 585, 655, 837, 903
FauI CCCGC 1 cut(s) 127
FbaI TGATCA 1 cut(s) 994
FblI GTMKAC 1 cut(s) 424
Fnu4HI GCNGC 1 cut(s) 308
FokI GGATG 2 cut(s) 205, 399
FriOI GRGCYC 1 cut(s) 521
Fsp4HI GCNGC 1 cut(s) 308
FspBI CTAG 7 cut(s) 78, 203, 387, 492, 860, 864, 1179
GlaI GCGC 1 cut(s) 816
GluI GCNGC 1 cut(s) 308
HaeII RGCGCY 1 cut(s) 818
HaeIII GGCC 2 cut(s) 137, 851
HapII CCGG 1 cut(s) 852
HgaI GACGC 1 cut(s) 611
HhaI GCGC 1 cut(s) 817
Hin1II CATG 5 cut(s) 136, 589, 659, 841, 907
Hin6I GCGC 1 cut(s) 815
HinP1I GCGC 1 cut(s) 815
HincII GTYRAC 2 cut(s) 425, 988
HindII GTYRAC 2 cut(s) 425, 988
HinfI GANTC 8 cut(s) 65, 394, 400, 503, 689, 737, 827, 1054
HpaII CCGG 1 cut(s) 852
HphI GGTGA 1 cut(s) 866
Hpy166II GTNNAC 3 cut(s) 425, 988, 1223
Hpy188I TCNGA 9 cut(s) 75, 355, 393, 399, 405, 508, 673, 742, 826
Hpy188III TCNNGA 8 cut(s) 62, 242, 248, 323, 560, 656, 838, 1198
Hpy8I GTNNAC 3 cut(s) 425, 988, 1223
Hpy99I CGWCG 2 cut(s) 16, 426
HpyAV CCTTC 3 cut(s) 274, 841, 938
HpyCH4III ACNGT 3 cut(s) 215, 221, 359
HpyCH4IV ACGT 2 cut(s) 86, 1089
HpyCH4V TGCA 4 cut(s) 668, 712, 794, 1087
HpyF10VI GCNNNNNNNGC 5 cut(s) 143, 275, 611, 900, 909
HpyF3I CTNAG 3 cut(s) 303, 392, 908
HpySE526I ACGT 2 cut(s) 86, 1089
Hsp92II CATG 5 cut(s) 136, 589, 659, 841, 907
HspAI GCGC 1 cut(s) 815
Ksp22I TGATCA 1 cut(s) 994
Kzo9I GATC 4 cut(s) 244, 478, 994, 1010
LguI GCTCTTC 1 cut(s) 710
LmnI GCTCC 4 cut(s) 165, 271, 524, 879
Lsp1109I GCAGC 1 cut(s) 294
LweI GCATC 2 cut(s) 189, 677
MaeI CTAG 7 cut(s) 78, 203, 387, 492, 860, 864, 1179
MaeII ACGT 2 cut(s) 86, 1089
MaeIII GTNAC 3 cut(s) 215, 359, 779
MalI GATC 4 cut(s) 246, 480, 996, 1012
MboI GATC 4 cut(s) 244, 478, 994, 1010
MfeI CAATTG 2 cut(s) 372, 606
MhlI GDGCHC 1 cut(s) 521
MlsI TGGCCA 1 cut(s) 137
MluCI AATT 6 cut(s) 54, 334, 372, 536, 606, 773
MluNI TGGCCA 1 cut(s) 137
MlyI GAGTC 6 cut(s) 74, 403, 409, 746, 836, 1048
MmeI TCCRAC 4 cut(s) 98, 107, 192, 930
Mox20I TGGCCA 1 cut(s) 137
Mph1103I ATGCAT 1 cut(s) 670
MscI TGGCCA 1 cut(s) 137
MseI TTAA 3 cut(s) 113, 210, 1227
MslI CAYNNNNRTG 1 cut(s) 587
Msp20I TGGCCA 1 cut(s) 137
MspA1I CMGCKG 1 cut(s) 307
MspCI CTTAAG 1 cut(s) 112
MspI CCGG 1 cut(s) 852
MspR9I CCNGG 2 cut(s) 157, 1008
MunI CAATTG 2 cut(s) 372, 606
Mva1269I GAATGC 2 cut(s) 644, 772
MvaI CCWGG 2 cut(s) 157, 1008
MvnI CGCG 2 cut(s) 269, 614
MwoI GCNNNNNNNGC 5 cut(s) 143, 275, 611, 900, 909
NcoI CCATGG 2 cut(s) 132, 585
NdeII GATC 4 cut(s) 244, 478, 994, 1010
NheI GCTAGC 1 cut(s) 859
NlaIII CATG 5 cut(s) 136, 589, 659, 841, 907
NlaIV GGNNCC 1 cut(s) 161
NsiI ATGCAT 1 cut(s) 670
NspI RCATGY 1 cut(s) 907
OliI CACNNNNGTG 1 cut(s) 587
PaeI GCATGC 1 cut(s) 907
PagI TCATGA 2 cut(s) 655, 837
PciSI GCTCTTC 1 cut(s) 710
PctI GAATGC 2 cut(s) 644, 772
PfeI GAWTC 2 cut(s) 503, 689
PkrI GCNGC 1 cut(s) 309
PleI GAGTC 6 cut(s) 73, 402, 408, 745, 835, 1048
PpsI GAGTC 6 cut(s) 73, 402, 408, 745, 835, 1048
PpuMI RGGWCCY 1 cut(s) 925
Psp124BI GAGCTC 1 cut(s) 521
Psp1406I AACGTT 1 cut(s) 86
Psp5II RGGWCCY 1 cut(s) 925
Psp6I CCWGG 2 cut(s) 155, 1006
PspGI CCWGG 2 cut(s) 155, 1006
PspN4I GGNNCC 1 cut(s) 161
PspPI GGNCC 2 cut(s) 889, 925
PspPPI RGGWCCY 1 cut(s) 925
PsrI GAACNNNNNNTAC 2 cut(s) 953, 985
PvuII CAGCTG 1 cut(s) 307
RsaI GTAC 7 cut(s) 229, 287, 332, 971, 1129, 1147, 1156
RsaNI GTAC 7 cut(s) 228, 286, 331, 970, 1128, 1146, 1155
RseI CAYNNNNRTG 1 cut(s) 587
SacI GAGCTC 1 cut(s) 521
SalI GTCGAC 1 cut(s) 423
SapI GCTCTTC 1 cut(s) 710
SaqAI TTAA 3 cut(s) 113, 210, 1227
SatI GCNGC 1 cut(s) 308
Sau3AI GATC 4 cut(s) 244, 478, 994, 1010
Sau96I GGNCC 2 cut(s) 889, 925
ScaI AGTACT 2 cut(s) 229, 971
SchI GAGTC 6 cut(s) 74, 403, 409, 746, 836, 1048
ScrFI CCNGG 2 cut(s) 157, 1008
SduI GDGCHC 1 cut(s) 521
SfaNI GCATC 2 cut(s) 189, 677
SinI GGWCC 2 cut(s) 889, 925
SmiMI CAYNNNNRTG 1 cut(s) 587
SmlI CTYRAG 4 cut(s) 112, 240, 558, 725
SmoI CTYRAG 4 cut(s) 112, 240, 558, 725
SpeI ACTAGT 2 cut(s) 77, 386
SphI GCATGC 1 cut(s) 907
Sse9I AATT 6 cut(s) 54, 334, 372, 536, 606, 773
SsiI CCGC 6 cut(s) 120, 144, 269, 614, 892, 958
SspMI CTAG 7 cut(s) 78, 203, 387, 492, 860, 864, 1179
SstI GAGCTC 1 cut(s) 521
StyD4I CCNGG 2 cut(s) 155, 1006
StyI CCWWGG 2 cut(s) 132, 585
TaaI ACNGT 3 cut(s) 215, 221, 359
TaiI ACGT 2 cut(s) 89, 1092
TaqI TCGA 2 cut(s) 424, 695
TasI AATT 6 cut(s) 54, 334, 372, 536, 606, 773
TatI WGTACW 3 cut(s) 227, 330, 969
TfiI GAWTC 2 cut(s) 503, 689
Tru1I TTAA 3 cut(s) 113, 210, 1227
Tru9I TTAA 3 cut(s) 113, 210, 1227
TscAI CASTG 1 cut(s) 1168
TseI GCWGC 1 cut(s) 307
TspDTI ATGAA 7 cut(s) 47, 209, 401, 644, 702, 826, 1127
TspRI CASTG 1 cut(s) 1168
Vha464I CTTAAG 1 cut(s) 112
VpaK11BI GGWCC 2 cut(s) 889, 925
XapI RAATTY 1 cut(s) 54
XceI RCATGY 1 cut(s) 907
XmiI GTMKAC 1 cut(s) 424
XspI CTAG 7 cut(s) 78, 203, 387, 492, 860, 864, 1179
ZrmI AGTACT 2 cut(s) 229, 971
Zsp2I ATGCAT 1 cut(s) 670
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.