Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0002133

Physical Location & Seq

Genomic Coordinates Forward (+)

279356 .. 280018

Gene Structure 663 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG004500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGTGTCAAGTTTTGACGCAATTGTCGCGGAGATTGTGATAAAAAATGTGGAATGCGATATCCTACTTCATGAGGTCAATGCATCGGAGAGGCAACAAAATGAATCATCGAGGAAGATAGAGTTGCAGAAGAGCTTGCTTGAGGTTTTGGAGTCTGAAAGGCTCATACTACTGAATGAGAATGCTAAATTGGGTTACAGAGTGGGTGCATTGATGGAAGAGAACAAAGCGCTTGCCTCCGAGTCTCTGTTCATGAGGAGGAAGGCCGGTGAGCTAGCTAGGCATTTGCTCCAAATGAGAGAGGACCGCAGGGTCAGCATGCTCAGCCGTAAGATAGAGGACCTTCAGGGACAGATTTATGGGTTGGAGAAGCGGAACAAGGAGTACTACCAGCAACTTATGAAGAGGAGAGGTGGTACTGGGACGAGGACTGGTACGAAGGGTACTGGCACTGACAAGAAAGGTTCTAGTTGGTGGGGAAAGGTCAAGAACATAGACTTGTTTCTATGTGGACTTAACCCAACTTCTACTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KIP1

Protein Analysis

178

Amino Acids

20.23

Weight (kDa)

9.36

Isoelectric Point (pI)

53.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002133)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48405 AT3G17680 AT3G17680 AT3G17680
fragaria_vesca	FvH4_5g18280 FvH4_5g18280 FvH4_5g18280 FvH4_5g18280 FvH4_5g18280 FvH4_5g18290
malus_domestica	MD06G1238400.v1.1 MD06G1238700.v1.1 MD14G1244700.v1.1 MD14G1244900.v1.1
prunus_persica	Prupe.5G242300_v2.0.a1 Prupe.5G242300_v2.0.a1 Prupe.5G242300_v2.0.a1 Prupe.5G242300_v2.0.a1 Prupe.5G242300_v2.0.a1 Prupe.5G242300_v2.0.a1 Prupe.5G242600_v2.0.a1
pyrus_communis	pycom06g21390 pycom06g21420 pycom14g20590
rosa_chinensis	RchiOBHm_Chr7g0177291 RchiOBHm_Chr7g0177301
rosa_laevigata	RLG00000005548
rosa_multiflora	Rmu_sc0005310.1_g000008
rosa_roxburghii	Rroxscaffold_3G00275960 Rroxscaffold_3G00275970
rosa_rugosa	Rorug06G0404500 Rorug06G0404600 Rorug06G0404700 Rorug06G0404800
rosa_samantha	Rh7AG004500 Rh7AG004600 Rh7BG004400 Rh7BG004500 Rh7CG004300 Rh7CG004400 Rh7DG004300 Rh7DG004400
rosa_wichuraiana	Rw7G000370 Rw7G000380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	23, 311
AccII	CGCG	1 cut(s)	29
AciI	CCGC	3 cut(s)	29, 307, 373
AcuI	CTGAAG	1 cut(s)	329
AfaI	GTAC	4 cut(s)	386, 418, 436, 445
AfeI	AGCGCT	1 cut(s)	231
AjuI	GAANNNNNNNTTGG	2 cut(s)	173, 205
AluBI	AGCT	3 cut(s)	135, 274, 278
AluI	AGCT	3 cut(s)	135, 274, 278
Alw26I	GTCTC	1 cut(s)	249
Aor51HI	AGCGCT	1 cut(s)	231
AoxI	GGCC	1 cut(s)	264
AspLEI	GCGC	1 cut(s)	232
AspS9I	GGNCC	2 cut(s)	304, 340
AsuHPI	GGTGA	1 cut(s)	281
AsuNHI	GCTAGC	1 cut(s)	274
AvaII	GGWCC	2 cut(s)	304, 340
BccI	CCATC	1 cut(s)	208
BceAI	ACGGC	1 cut(s)	312
BcoDI	GTCTC	1 cut(s)	249
BfaI	CTAG	3 cut(s)	275, 279, 468
BfoI	RGCGCY	1 cut(s)	233
BlpI	GCTNAGC	1 cut(s)	323
BmcAI	AGTACT	1 cut(s)	386
Bme18I	GGWCC	2 cut(s)	304, 340
BmgT120I	GGNCC	2 cut(s)	304, 340
BmrI	ACTGGG	1 cut(s)	429
BmsI	GCATC	1 cut(s)	92
BmtI	GCTAGC	1 cut(s)	278
BmuI	ACTGGG	1 cut(s)	429
Bpu1102I	GCTNAGC	1 cut(s)	323
BpuEI	CTTGAG	1 cut(s)	161
BsaXI	ACNNNNNCTCC	2 cut(s)	400, 430
Bse118I	RCCGGY	1 cut(s)	266
Bse1I	ACTGG	3 cut(s)	424, 436, 451
BseMII	CTCAG	1 cut(s)	337
BseNI	ACTGG	3 cut(s)	424, 436, 451
BseRI	GAGGAG	2 cut(s)	271, 421
Bsh1236I	CGCG	1 cut(s)	29
BshFI	GGCC	1 cut(s)	266
BsiSI	CCGG	1 cut(s)	267
BslFI	GGGAC	2 cut(s)	363, 436
BsmAI	GTCTC	1 cut(s)	249
BsmFI	GGGAC	2 cut(s)	363, 436
BsmI	GAATGC	2 cut(s)	59, 187
BsnI	GGCC	1 cut(s)	266
Bsp1720I	GCTNAGC	1 cut(s)	323
BspACI	CCGC	3 cut(s)	29, 307, 373
BspANI	GGCC	1 cut(s)	266
BspCNI	CTCAG	1 cut(s)	336
BspFNI	CGCG	1 cut(s)	29
BspHI	TCATGA	2 cut(s)	70, 252
BspOI	GCTAGC	1 cut(s)	278
BspQI	GCTCTTC	1 cut(s)	125
BsrFI	RCCGGY	1 cut(s)	266
BsrI	ACTGG	3 cut(s)	424, 436, 451
BssAI	RCCGGY	1 cut(s)	266
Bst6I	CTCTTC	3 cut(s)	125, 213, 398
BstC8I	GCNNGC	4 cut(s)	137, 234, 276, 320
BstDEI	CTNAG	1 cut(s)	323
BstFNI	CGCG	1 cut(s)	29
BstH2I	RGCGCY	1 cut(s)	233
BstHHI	GCGC	1 cut(s)	232
BstMAI	GTCTC	1 cut(s)	249
BstMWI	GCNNNNNNNGC	4 cut(s)	26, 280, 315, 324
BstNSI	RCATGY	1 cut(s)	322
BstUI	CGCG	1 cut(s)	29
BsuRI	GGCC	1 cut(s)	266
BtsIMutI	CAGTG	1 cut(s)	450
Cac8I	GCNNGC	4 cut(s)	137, 234, 276, 320
CciI	TCATGA	2 cut(s)	70, 252
CfoI	GCGC	1 cut(s)	232
Cfr10I	RCCGGY	1 cut(s)	266
Cfr13I	GGNCC	2 cut(s)	304, 340
CseI	GACGC	1 cut(s)	26
Csp6I	GTAC	4 cut(s)	385, 417, 435, 444
CviAII	CATG	3 cut(s)	71, 253, 319
CviJI	RGCY	6 cut(s)	135, 163, 266, 274, 278, 327
CviKI_1	RGCY	6 cut(s)	135, 163, 266, 274, 278, 327
CviQI	GTAC	4 cut(s)	385, 417, 435, 444
DdeI	CTNAG	1 cut(s)	323
DrdI	GACNNNNNNGTC	2 cut(s)	23, 311
DseDI	GACNNNNNNGTC	2 cut(s)	23, 311
Eam1104I	CTCTTC	3 cut(s)	125, 213, 398
EarI	CTCTTC	3 cut(s)	125, 213, 398
Eco32I	GATATC	1 cut(s)	61
Eco47I	GGWCC	2 cut(s)	304, 340
Eco47III	AGCGCT	1 cut(s)	231
Eco57I	CTGAAG	1 cut(s)	329
EcoO109I	RGGNCCY	1 cut(s)	340
EcoRV	GATATC	1 cut(s)	61
EcoT22I	ATGCAT	1 cut(s)	85
FaeI	CATG	3 cut(s)	74, 256, 322
FaiI	YATR	8 cut(s)	72, 167, 254, 320, 360, 401, 494, 508
FaqI	GGGAC	2 cut(s)	363, 436
FatI	CATG	3 cut(s)	70, 252, 318
FspBI	CTAG	3 cut(s)	275, 279, 468
GlaI	GCGC	1 cut(s)	231
HaeII	RGCGCY	1 cut(s)	233
HaeIII	GGCC	1 cut(s)	266
HapII	CCGG	1 cut(s)	267
HgaI	GACGC	1 cut(s)	26
HhaI	GCGC	1 cut(s)	232
Hin1II	CATG	3 cut(s)	74, 256, 322
Hin6I	GCGC	1 cut(s)	230
HinP1I	GCGC	1 cut(s)	230
HinfI	GANTC	3 cut(s)	104, 152, 242
HpaII	CCGG	1 cut(s)	267
HphI	GGTGA	1 cut(s)	281
Hpy166II	GTNNAC	1 cut(s)	512
Hpy188I	TCNGA	3 cut(s)	88, 157, 241
Hpy188III	TCNNGA	3 cut(s)	71, 253, 487
Hpy8I	GTNNAC	1 cut(s)	512
HpyAV	CCTTC	3 cut(s)	256, 353, 433
HpyCH4V	TGCA	3 cut(s)	83, 127, 209
HpyF10VI	GCNNNNNNNGC	4 cut(s)	26, 280, 315, 324
HpyF3I	CTNAG	1 cut(s)	323
Hsp92II	CATG	3 cut(s)	74, 256, 322
HspAI	GCGC	1 cut(s)	230
LguI	GCTCTTC	1 cut(s)	125
LmnI	GCTCC	1 cut(s)	294
LpnPI	CCDG	7 cut(s)	280, 295, 332, 404, 405, 417, 432
LweI	GCATC	1 cut(s)	92
MaeI	CTAG	3 cut(s)	275, 279, 468
MaeIII	GTNAC	1 cut(s)	194
MboII	GAAGA	4 cut(s)	127, 142, 230, 415
MfeI	CAATTG	1 cut(s)	21
MluCI	AATT	2 cut(s)	21, 188
MlyI	GAGTC	2 cut(s)	161, 251
MmeI	TCCRAC	1 cut(s)	345
Mph1103I	ATGCAT	1 cut(s)	85
MseI	TTAA	1 cut(s)	516
MspI	CCGG	1 cut(s)	267
MunI	CAATTG	1 cut(s)	21
Mva1269I	GAATGC	2 cut(s)	59, 187
MvnI	CGCG	1 cut(s)	29
MwoI	GCNNNNNNNGC	4 cut(s)	26, 280, 315, 324
NheI	GCTAGC	1 cut(s)	274
NlaIII	CATG	3 cut(s)	74, 256, 322
NsiI	ATGCAT	1 cut(s)	85
NspI	RCATGY	1 cut(s)	322
PaeI	GCATGC	1 cut(s)	322
PagI	TCATGA	2 cut(s)	70, 252
PciSI	GCTCTTC	1 cut(s)	125
PctI	GAATGC	2 cut(s)	59, 187
PfeI	GAWTC	1 cut(s)	104
PleI	GAGTC	2 cut(s)	160, 250
PpsI	GAGTC	2 cut(s)	160, 250
PpuMI	RGGWCCY	1 cut(s)	340
Psp5II	RGGWCCY	1 cut(s)	340
PspPI	GGNCC	2 cut(s)	304, 340
PspPPI	RGGWCCY	1 cut(s)	340
PsrI	GAACNNNNNNTAC	2 cut(s)	368, 400
RsaI	GTAC	4 cut(s)	386, 418, 436, 445
RsaNI	GTAC	4 cut(s)	385, 417, 435, 444
SapI	GCTCTTC	1 cut(s)	125
SaqAI	TTAA	1 cut(s)	516
Sau96I	GGNCC	2 cut(s)	304, 340
ScaI	AGTACT	1 cut(s)	386
SchI	GAGTC	2 cut(s)	161, 251
SetI	ASST	9 cut(s)	78, 137, 147, 276, 280, 345, 415, 466, 486
SfaNI	GCATC	1 cut(s)	92
SinI	GGWCC	2 cut(s)	304, 340
SmlI	CTYRAG	1 cut(s)	140
SmoI	CTYRAG	1 cut(s)	140
SphI	GCATGC	1 cut(s)	322
Sse9I	AATT	2 cut(s)	21, 188
SsiI	CCGC	3 cut(s)	29, 307, 373
SspMI	CTAG	3 cut(s)	275, 279, 468
TaqI	TCGA	1 cut(s)	110
TasI	AATT	2 cut(s)	21, 188
TatI	WGTACW	1 cut(s)	384
TfiI	GAWTC	1 cut(s)	104
Tru1I	TTAA	1 cut(s)	516
Tru9I	TTAA	1 cut(s)	516
TscAI	CASTG	1 cut(s)	457
TspDTI	ATGAA	4 cut(s)	59, 117, 241, 416
TspRI	CASTG	1 cut(s)	457
VpaK11BI	GGWCC	2 cut(s)	304, 340
XceI	RCATGY	1 cut(s)	322
XspI	CTAG	3 cut(s)	275, 279, 468
ZrmI	AGTACT	1 cut(s)	386
Zsp2I	ATGCAT	1 cut(s)	85

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.