FvH4_5g18280

KIP1-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0002133
Physical Location & Seq
Reverse (-)
10511347 .. 10515980
4634 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g18280.t4

Sequence Viewer

Length: 1278 bp
ATGGTTCTGTGTGTCAGTAACGTCGACGTGGTGACAATGGGGAAACCAGCAGCATCATCATCGTCGTCGTCGTCATCTGCTTCTTCTGTTCAAACTCATCACGACTCAGCTCCGGCTAGTCCAACAAGCACAAGGAAGATGAGCTTAATAAGCACCAACCCGACCACCATGGCCACCACCGCCAAACCGACCTGGCTCCTCTCCAACCTTGCCGATGTGGAAGAGAGGATGAAGATGGTAGCATTGAACAGTAACAGTAAAAGTACTAAGACTCCTGAAGATCAAGACACTGGGGACACCTTCGCGGAGAGAGCTGAAGCTTACTACAAAACACGCCCTCAGCTGCTCTCCCTACTTCAAGACCTGTACAATTCCTATCTCACACTATCTGACCGTTACATTCAAACAATCGCCAAAACTACTAGTCTGAGTCAGAGTCAGAGTTTCCATCCTCCTCGTCGACAATCTTCTCAGACCTCAACCATTGAATACTATGATTACTATGAACTGCAAGATCAATATGAAACTAGCCAGAATGATTCAGATGTGGAGAGTACCGTCTCTTATCAGCAACATCTCTTATCACTACTTGCTCAAGATGACAATGATGATAATACCACCATGGCATCCTTTGATGCAATTGTCGCGGAGATTGTGATAAAAAATGTGGAATGTGATATTCTACTTCATGAGGTCAATGCATCAGAGAGGCAACAAAATGAATCGTCGAGGAAGATAGAGTTGCAGAAGAGCTTGCTTGAGGTTTTGGAGTCTGAAAGGCTCATCCTACTGAATGAGAATTCTAAATTGGGTTACAGAGTGGGTGCATTGGTGGAAGAGAACAAAGCTCTTGCTTCTGAGTCTATGTTCATGAGGAGGAAGGCCGGTGAGCTAGCTAGGTGTTTGCTCCAAATGAGAGAGGATCGCAGGGTCAGCATGCTCAGCCGTAAGATAGAGGACCTCCAGGGACAGATTTATGGACTGGAGAAGCGCAACAAGGAGTACTACCAGCAACTTGTCAGTAAAGACCACTCGCAACAAGGATCAGTTGAAGAAGAGAGGATTAGTAGCATCAACAAGAAGAAGACAAGAAAGGGGATTGGTAGAAGTAGTAATGAGGTGGATTTGCACGTTTGTTTCCAAATAGGGAAGACGAAGAGGAGAGGTGGTACTGTTACGAGGGGTACTGGCGCCGACAAGAAAGGTTCTAGTTGGTGGGGAAAGATCAAGAACATGGACTTGTTTCTGTGTGGACTTAACCCAACTTCTGCTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KIP1

Protein Analysis

426

Amino Acids

47.64

Weight (kDa)

6.43

Isoelectric Point (pI)

54.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KIP1 PF07765 60 - 133 3.2e-10 KIP1-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1190
AccI GTMKAC 2 cut(s) 24, 460
AccII CGCG 2 cut(s) 305, 647
AciI CCGC 3 cut(s) 180, 305, 647
AclWI GGATC 2 cut(s) 930, 1051
AcoI YGGCCR 1 cut(s) 171
AcsI RAATTY 1 cut(s) 799
AcuI CTGAAG 2 cut(s) 297, 336
AcyI GRCGYC 1 cut(s) 1191
AfaI GTAC 6 cut(s) 265, 368, 556, 1004, 1171, 1186
AgsI TTSAA 6 cut(s) 92, 247, 359, 404, 488, 1052
AhlI ACTAGT 1 cut(s) 422
AjiI CACGTC 1 cut(s) 28
AjnI CCWGG 2 cut(s) 191, 963
AjuI GAANNNNNNNTTGG 2 cut(s) 791, 823
AluBI AGCT 9 cut(s) 110, 144, 314, 320, 343, 753, 848, 892, 896
AluI AGCT 9 cut(s) 110, 144, 314, 320, 343, 753, 848, 892, 896
Alw26I GTCTC 1 cut(s) 565
AlwI GGATC 2 cut(s) 930, 1051
AoxI GGCC 2 cut(s) 171, 882
ApeKI GCWGC 3 cut(s) 50, 343, 1271
ApoI RAATTY 1 cut(s) 799
AspLEI GCGC 2 cut(s) 993, 1193
AspS9I GGNCC 1 cut(s) 958
AsuHPI GGTGA 2 cut(s) 43, 899
AsuNHI GCTAGC 1 cut(s) 892
AvaII GGWCC 1 cut(s) 958
BalI TGGCCA 1 cut(s) 173
BanI GGYRCC 1 cut(s) 1190
BbsI GAAGAC 2 cut(s) 1091, 1157
BbvCI CCTCAGC 1 cut(s) 339
BbvI GCAGC 3 cut(s) 62, 330, 1258
BccI CCATC 2 cut(s) 229, 456
BceAI ACGGC 1 cut(s) 930
BcgI CGANNNNNNTGC 2 cut(s) 42, 76
BciT130I CCWGG 2 cut(s) 193, 965
BcoDI GTCTC 1 cut(s) 565
BcuI ACTAGT 1 cut(s) 422
BfaI CTAG 6 cut(s) 117, 423, 528, 893, 897, 1209
BfoI RGCGCY 1 cut(s) 1194
BisI GCNGC 3 cut(s) 51, 344, 1272
BlpI GCTNAGC 1 cut(s) 941
BlsI GCNGC 3 cut(s) 52, 345, 1273
BmcAI AGTACT 2 cut(s) 265, 1004
Bme1390I CCNGG 2 cut(s) 193, 965
Bme18I GGWCC 1 cut(s) 958
BmgBI CACGTC 1 cut(s) 28
BmgT120I GGNCC 1 cut(s) 958
BmiI GGNNCC 2 cut(s) 197, 1192
BmrFI CCNGG 2 cut(s) 193, 965
BmrI ACTGGG 1 cut(s) 300
BmsI GCATC 5 cut(s) 62, 625, 635, 710, 1080
BmtI GCTAGC 1 cut(s) 896
BmuI ACTGGG 1 cut(s) 300
BpiI GAAGAC 2 cut(s) 1091, 1157
BpmI CTGGAG 2 cut(s) 947, 1004
Bpu10I CCTNAGC 1 cut(s) 339
Bpu1102I GCTNAGC 1 cut(s) 941
BpuEI CTTGAG 2 cut(s) 579, 779
BsaHI GRCGYC 1 cut(s) 1191
BsaJI CCNNGG 3 cut(s) 168, 621, 964
BsaXI ACNNNNNCTCC 4 cut(s) 256, 286, 1153, 1183
Bse118I RCCGGY 1 cut(s) 884
Bse1I ACTGG 3 cut(s) 295, 987, 1192
BseBI CCWGG 2 cut(s) 193, 965
BseDI CCNNGG 3 cut(s) 168, 621, 964
BseGI GGATG 4 cut(s) 234, 448, 626, 783
BseMII CTCAG 6 cut(s) 120, 353, 419, 485, 849, 955
BseNI ACTGG 3 cut(s) 295, 987, 1192
BseRI GAGGAG 4 cut(s) 188, 444, 889, 1174
BseXI GCAGC 3 cut(s) 62, 330, 1258
Bsh1236I CGCG 2 cut(s) 305, 647
BshFI GGCC 2 cut(s) 173, 884
BshNI GGYRCC 1 cut(s) 1190
BsiSI CCGG 2 cut(s) 113, 885
BslFI GGGAC 2 cut(s) 308, 981
BsmAI GTCTC 1 cut(s) 565
BsmBI CGTCTC 1 cut(s) 565
BsmFI GGGAC 2 cut(s) 308, 981
BsnI GGCC 2 cut(s) 173, 884
Bsp1407I TGTACA 1 cut(s) 366
Bsp143I GATC 5 cut(s) 280, 514, 922, 1043, 1224
Bsp1720I GCTNAGC 1 cut(s) 941
Bsp19I CCATGG 2 cut(s) 168, 621
BspACI CCGC 3 cut(s) 180, 305, 647
BspANI GGCC 2 cut(s) 173, 884
BspCNI CTCAG 6 cut(s) 119, 352, 420, 484, 850, 954
BspFNI CGCG 2 cut(s) 305, 647
BspHI TCATGA 2 cut(s) 688, 870
BspLI GGNNCC 2 cut(s) 197, 1192
BspOI GCTAGC 1 cut(s) 896
BspPI GGATC 2 cut(s) 930, 1051
BspQI GCTCTTC 1 cut(s) 743
BspT107I GGYRCC 1 cut(s) 1190
BsrFI RCCGGY 1 cut(s) 884
BsrGI TGTACA 1 cut(s) 366
BsrI ACTGG 3 cut(s) 295, 987, 1192
BssAI RCCGGY 1 cut(s) 884
BssECI CCNNGG 3 cut(s) 168, 621, 964
BssMI GATC 5 cut(s) 280, 514, 922, 1043, 1224
BssNI GRCGYC 1 cut(s) 1191
BssT1I CCWWGG 2 cut(s) 168, 621
Bst2UI CCWGG 2 cut(s) 193, 965
Bst4CI ACNGT 5 cut(s) 251, 257, 395, 559, 1174
Bst6I CTCTTC 5 cut(s) 216, 743, 831, 1050, 1151
BstACI GRCGYC 1 cut(s) 1191
BstAUI TGTACA 1 cut(s) 366
BstC8I GCNNGC 3 cut(s) 755, 894, 938
BstDEI CTNAG 7 cut(s) 106, 267, 339, 428, 471, 858, 941
BstDSI CCRYGG 2 cut(s) 168, 621
BstF5I GGATG 4 cut(s) 234, 448, 626, 783
BstFNI CGCG 2 cut(s) 305, 647
BstH2I RGCGCY 1 cut(s) 1194
BstHHI GCGC 2 cut(s) 993, 1193
BstKTI GATC 5 cut(s) 283, 517, 925, 1046, 1227
BstMAI GTCTC 1 cut(s) 565
BstMBI GATC 5 cut(s) 280, 514, 922, 1043, 1224
BstMWI GCNNNNNNNGC 6 cut(s) 150, 179, 311, 644, 933, 942
BstNI CCWGG 2 cut(s) 193, 965
BstNSI RCATGY 1 cut(s) 940
BstSCI CCNGG 2 cut(s) 191, 963
BstUI CGCG 2 cut(s) 305, 647
BstV1I GCAGC 3 cut(s) 62, 330, 1258
BstV2I GAAGAC 2 cut(s) 1091, 1157
BsuRI GGCC 2 cut(s) 173, 884
BtgI CCRYGG 2 cut(s) 168, 621
BtrI CACGTC 1 cut(s) 28
BtsCI GGATG 4 cut(s) 234, 448, 626, 783
BtsIMutI CAGTG 1 cut(s) 288
Cac8I GCNNGC 3 cut(s) 755, 894, 938
CciI TCATGA 2 cut(s) 688, 870
CfoI GCGC 2 cut(s) 993, 1193
Cfr10I RCCGGY 1 cut(s) 884
Cfr13I GGNCC 1 cut(s) 958
Csp6I GTAC 6 cut(s) 264, 367, 555, 1003, 1170, 1185
CviAII CATG 6 cut(s) 169, 622, 689, 871, 937, 1234
CviQI GTAC 6 cut(s) 264, 367, 555, 1003, 1170, 1185
DdeI CTNAG 7 cut(s) 106, 267, 339, 428, 471, 858, 941
DinI GGCGCC 1 cut(s) 1192
DpnI GATC 5 cut(s) 282, 516, 924, 1045, 1226
DpnII GATC 5 cut(s) 280, 514, 922, 1043, 1224
EaeI YGGCCR 1 cut(s) 171
Eam1104I CTCTTC 5 cut(s) 216, 743, 831, 1050, 1151
EarI CTCTTC 5 cut(s) 216, 743, 831, 1050, 1151
Eco130I CCWWGG 2 cut(s) 168, 621
Eco47I GGWCC 1 cut(s) 958
Eco57I CTGAAG 2 cut(s) 297, 336
EcoO109I RGGNCCY 1 cut(s) 958
EcoRI GAATTC 1 cut(s) 799
EcoRII CCWGG 2 cut(s) 191, 963
EcoT14I CCWWGG 2 cut(s) 168, 621
EcoT22I ATGCAT 1 cut(s) 703
EgeI GGCGCC 1 cut(s) 1192
EheI GGCGCC 1 cut(s) 1192
ErhI CCWWGG 2 cut(s) 168, 621
Esp3I CGTCTC 1 cut(s) 565
FaeI CATG 6 cut(s) 172, 625, 692, 874, 940, 1237
FalI AAGNNNNNCTT 2 cut(s) 128, 160
FaqI GGGAC 2 cut(s) 308, 981
FatI CATG 6 cut(s) 168, 621, 688, 870, 936, 1233
FblI GTMKAC 2 cut(s) 24, 460
Fnu4HI GCNGC 3 cut(s) 51, 344, 1272
FokI GGATG 4 cut(s) 241, 435, 613, 770
Fsp4HI GCNGC 3 cut(s) 51, 344, 1272
FspBI CTAG 6 cut(s) 117, 423, 528, 893, 897, 1209
GlaI GCGC 2 cut(s) 992, 1192
GluI GCNGC 3 cut(s) 51, 344, 1272
GsuI CTGGAG 2 cut(s) 947, 1004
HaeII RGCGCY 1 cut(s) 1194
HaeIII GGCC 2 cut(s) 173, 884
HapII CCGG 2 cut(s) 113, 885
HhaI GCGC 2 cut(s) 993, 1193
Hin1I GRCGYC 1 cut(s) 1191
Hin1II CATG 6 cut(s) 172, 625, 692, 874, 940, 1237
Hin6I GCGC 2 cut(s) 991, 1191
HinP1I GCGC 2 cut(s) 991, 1191
HincII GTYRAC 2 cut(s) 25, 461
HindII GTYRAC 2 cut(s) 25, 461
HindIII AAGCTT 1 cut(s) 318
HinfI GANTC 8 cut(s) 104, 271, 430, 436, 539, 722, 770, 860
HpaII CCGG 2 cut(s) 113, 885
HphI GGTGA 2 cut(s) 43, 899
Hpy166II GTNNAC 3 cut(s) 25, 461, 1253
Hpy188I TCNGA 9 cut(s) 391, 429, 435, 441, 474, 544, 706, 775, 859
Hpy188III TCNNGA 8 cut(s) 101, 275, 284, 359, 596, 689, 871, 1228
Hpy8I GTNNAC 3 cut(s) 25, 461, 1253
Hpy99I CGWCG 7 cut(s) 26, 29, 67, 70, 73, 462, 730
HpyAV CCTTC 2 cut(s) 310, 874
HpyCH4III ACNGT 5 cut(s) 251, 257, 395, 559, 1174
HpyCH4IV ACGT 3 cut(s) 21, 27, 1131
HpyCH4V TGCA 6 cut(s) 511, 638, 701, 745, 827, 1129
HpyF10VI GCNNNNNNNGC 6 cut(s) 150, 179, 311, 644, 933, 942
HpyF3I CTNAG 7 cut(s) 106, 267, 339, 428, 471, 858, 941
HpySE526I ACGT 3 cut(s) 21, 27, 1131
Hsp92I GRCGYC 1 cut(s) 1191
Hsp92II CATG 6 cut(s) 172, 625, 692, 874, 940, 1237
HspAI GCGC 2 cut(s) 991, 1191
KasI GGCGCC 1 cut(s) 1190
Kzo9I GATC 5 cut(s) 280, 514, 922, 1043, 1224
LguI GCTCTTC 1 cut(s) 743
LmnI GCTCC 3 cut(s) 115, 201, 912
Lsp1109I GCAGC 3 cut(s) 62, 330, 1258
LweI GCATC 5 cut(s) 62, 625, 635, 710, 1080
MaeI CTAG 6 cut(s) 117, 423, 528, 893, 897, 1209
MaeII ACGT 3 cut(s) 21, 27, 1131
MaeIII GTNAC 6 cut(s) 17, 31, 251, 395, 812, 1174
MalI GATC 5 cut(s) 282, 516, 924, 1045, 1226
MboI GATC 5 cut(s) 280, 514, 922, 1043, 1224
MfeI CAATTG 1 cut(s) 639
MlsI TGGCCA 1 cut(s) 173
MluCI AATT 4 cut(s) 370, 639, 799, 806
MluNI TGGCCA 1 cut(s) 173
Mly113I GGCGCC 1 cut(s) 1191
MlyI GAGTC 6 cut(s) 98, 265, 439, 445, 779, 869
MmeI TCCRAC 2 cut(s) 146, 228
Mox20I TGGCCA 1 cut(s) 173
Mph1103I ATGCAT 1 cut(s) 703
MscI TGGCCA 1 cut(s) 173
MseI TTAA 2 cut(s) 146, 1257
Msp20I TGGCCA 1 cut(s) 173
MspA1I CMGCKG 1 cut(s) 343
MspI CCGG 2 cut(s) 113, 885
MspR9I CCNGG 2 cut(s) 193, 965
MunI CAATTG 1 cut(s) 639
MvaI CCWGG 2 cut(s) 193, 965
MvnI CGCG 2 cut(s) 305, 647
MwoI GCNNNNNNNGC 6 cut(s) 150, 179, 311, 644, 933, 942
NarI GGCGCC 1 cut(s) 1191
NcoI CCATGG 2 cut(s) 168, 621
NdeII GATC 5 cut(s) 280, 514, 922, 1043, 1224
NheI GCTAGC 1 cut(s) 892
NlaIII CATG 6 cut(s) 172, 625, 692, 874, 940, 1237
NlaIV GGNNCC 2 cut(s) 197, 1192
NmuCI GTSAC 1 cut(s) 31
NsiI ATGCAT 1 cut(s) 703
NspI RCATGY 1 cut(s) 940
PaeI GCATGC 1 cut(s) 940
PagI TCATGA 2 cut(s) 688, 870
PciSI GCTCTTC 1 cut(s) 743
PcsI WCGNNNNNNNCGW 1 cut(s) 68
PfeI GAWTC 2 cut(s) 539, 722
PkrI GCNGC 3 cut(s) 52, 345, 1273
PleI GAGTC 6 cut(s) 98, 265, 438, 444, 778, 868
PluTI GGCGCC 1 cut(s) 1194
PpsI GAGTC 6 cut(s) 98, 265, 438, 444, 778, 868
PpuMI RGGWCCY 1 cut(s) 958
Psp5II RGGWCCY 1 cut(s) 958
Psp6I CCWGG 2 cut(s) 191, 963
PspGI CCWGG 2 cut(s) 191, 963
PspN4I GGNNCC 2 cut(s) 197, 1192
PspPI GGNCC 1 cut(s) 958
PspPPI RGGWCCY 1 cut(s) 958
PvuII CAGCTG 1 cut(s) 343
RsaI GTAC 6 cut(s) 265, 368, 556, 1004, 1171, 1186
RsaNI GTAC 6 cut(s) 264, 367, 555, 1003, 1170, 1185
SalI GTCGAC 2 cut(s) 23, 459
SapI GCTCTTC 1 cut(s) 743
SaqAI TTAA 2 cut(s) 146, 1257
SatI GCNGC 3 cut(s) 51, 344, 1272
Sau3AI GATC 5 cut(s) 280, 514, 922, 1043, 1224
Sau96I GGNCC 1 cut(s) 958
ScaI AGTACT 2 cut(s) 265, 1004
SchI GAGTC 6 cut(s) 98, 265, 439, 445, 779, 869
ScrFI CCNGG 2 cut(s) 193, 965
SfaNI GCATC 5 cut(s) 62, 625, 635, 710, 1080
SfoI GGCGCC 1 cut(s) 1192
SgrDI CGTCGACG 1 cut(s) 23
SinI GGWCC 1 cut(s) 958
SmlI CTYRAG 2 cut(s) 594, 758
SmoI CTYRAG 2 cut(s) 594, 758
SpeI ACTAGT 1 cut(s) 422
SphI GCATGC 1 cut(s) 940
Sse9I AATT 4 cut(s) 370, 639, 799, 806
SsiI CCGC 3 cut(s) 180, 305, 647
SspDI GGCGCC 1 cut(s) 1190
SspMI CTAG 6 cut(s) 117, 423, 528, 893, 897, 1209
StyD4I CCNGG 2 cut(s) 191, 963
StyI CCWWGG 2 cut(s) 168, 621
TaaI ACNGT 5 cut(s) 251, 257, 395, 559, 1174
TaiI ACGT 3 cut(s) 24, 30, 1134
TaqI TCGA 3 cut(s) 24, 460, 728
TasI AATT 4 cut(s) 370, 639, 799, 806
TatI WGTACW 3 cut(s) 263, 366, 1002
TfiI GAWTC 2 cut(s) 539, 722
Tru1I TTAA 2 cut(s) 146, 1257
Tru9I TTAA 2 cut(s) 146, 1257
TscAI CASTG 1 cut(s) 295
TseFI GTSAC 1 cut(s) 31
TseI GCWGC 3 cut(s) 50, 343, 1271
Tsp45I GTSAC 1 cut(s) 31
TspDTI ATGAA 6 cut(s) 245, 519, 537, 677, 735, 859
TspRI CASTG 1 cut(s) 295
VpaK11BI GGWCC 1 cut(s) 958
XapI RAATTY 1 cut(s) 799
XceI RCATGY 1 cut(s) 940
XmiI GTMKAC 2 cut(s) 24, 460
XspI CTAG 6 cut(s) 117, 423, 528, 893, 897, 1209
ZrmI AGTACT 2 cut(s) 265, 1004
Zsp2I ATGCAT 1 cut(s) 703
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.