Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005310.1

Orthogroup ID

OG0002133

Physical Location & Seq

Genomic Coordinates Reverse (-)

41164 .. 43247

Gene Structure 2084 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005310.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1254 bp

atggagaaaccgacgacaccaccaccatcatcatcatcagtttcttctgttcaaattcatcaggagtcagttccgactagtccaacgttgtcaagcacaaggaagatgagcttaagccccgccccgaccaccatggccaccaccgccaaaccgacctggctcctctccaacctcgccgatgtggaagagaggatgaagatgctagcatttaacagtaacagtaaaagtaaaagtactaaaactcctcaagatcaagacaatggggacaccttcgcggagcgagctgaagcttactacaaaacacgccctcagctgctatccctacttcaagacttgtacaattcctatctcactctctctgaccgttacattcaaacaattgccaaaactactagtcagagtcagagtcagatttttcatcctcctcgtcgacaatcttctcaaacctcaaccattgaatactatgattactatgaccagcaagatcaatatgagactagccagaatgattcagatgtggagagctccctctcgtatcagcaatttcccacatcactacttgctcaagatgatgatgatgatgataccaccatggtgtcaagttttgacgcaattgtcgcggagattgtgataaaaaatgtggaatgcgatatcctacttcatgaggtcaatgcatcggagaggcaacaaaatgaatcatcgaggaagatagagttgcagaagagcttgcttgaggttttggagtctgaaaggctcatactactgaatgagaatgctaaattgggttacagagtgggtgcattgatggaagagaacaaagcgcttgcctccgagtctctgttcatgaggaggaaggccggtgagctagctaggtatttgctccaaatgagagaggaccgcagggtcagcatgctcagccgtaagatagaggaccttcagggacagatttatgggttggagaagcggaacaaggagtactaccagcaacttgtcaacaatgatcactcacaaccaggatcacttgaagaagagaagaatagtagcaacaacaagaagaagactcgtggtagaagtagtaatgaggtggatttgcacgtttgctttcaaataggaaagatgaagaggagaggtggtactgggacgaggactggtacgaggggtactggcactgacaagaaaggttctagttggtggggaaaggtcaagaacatagacttgtttctatgtggacttaacccaacttctactgcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KIP1

Protein Analysis

417

Amino Acids

47.18

Weight (kDa)

6.09

Isoelectric Point (pI)

61.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002133)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48405 AT3G17680 AT3G17680 AT3G17680
fragaria_vesca	FvH4_5g18280 FvH4_5g18280 FvH4_5g18280 FvH4_5g18280 FvH4_5g18280 FvH4_5g18290
malus_domestica	MD06G1238400.v1.1 MD06G1238700.v1.1 MD14G1244700.v1.1 MD14G1244900.v1.1
prunus_persica	Prupe.5G242300_v2.0.a1 Prupe.5G242300_v2.0.a1 Prupe.5G242300_v2.0.a1 Prupe.5G242300_v2.0.a1 Prupe.5G242300_v2.0.a1 Prupe.5G242300_v2.0.a1 Prupe.5G242600_v2.0.a1
pyrus_communis	pycom06g21390 pycom06g21420 pycom14g20590
rosa_chinensis	RchiOBHm_Chr7g0177291 RchiOBHm_Chr7g0177301
rosa_laevigata	RLG00000005548
rosa_multiflora	Rmu_sc0005310.1_g000008
rosa_roxburghii	Rroxscaffold_3G00275960 Rroxscaffold_3G00275970
rosa_rugosa	Rorug06G0404500 Rorug06G0404600 Rorug06G0404700 Rorug06G0404800
rosa_samantha	Rh7AG004500 Rh7AG004600 Rh7BG004400 Rh7BG004500 Rh7CG004300 Rh7CG004400 Rh7DG004300 Rh7DG004400
rosa_wichuraiana	Rw7G000370 Rw7G000380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	614, 902
AccI	GTMKAC	1 cut(s)	430
AccII	CGCG	2 cut(s)	275, 620
AciI	CCGC	6 cut(s)	120, 144, 275, 620, 898, 964
AclI	AACGTT	1 cut(s)	86
AclWI	GGATC	1 cut(s)	1024
AcoI	YGGCCR	1 cut(s)	135
AcsI	RAATTY	1 cut(s)	54
AcuI	CTGAAG	2 cut(s)	306, 920
AfaI	GTAC	6 cut(s)	235, 338, 977, 1135, 1153, 1162
AfeI	AGCGCT	1 cut(s)	822
AflII	CTTAAG	1 cut(s)	112
AgsI	TTSAA	6 cut(s)	53, 329, 374, 458, 1025, 1106
AhlI	ACTAGT	2 cut(s)	77, 392
AjnI	CCWGG	2 cut(s)	155, 1012
AjuI	GAANNNNNNNTTGG	2 cut(s)	764, 796
AleI	CACNNNNGTG	1 cut(s)	593
AluBI	AGCT	8 cut(s)	111, 284, 290, 313, 525, 726, 865, 869
AluI	AGCT	8 cut(s)	111, 284, 290, 313, 525, 726, 865, 869
Alw21I	GWGCWC	1 cut(s)	527
Alw26I	GTCTC	2 cut(s)	488, 840
AlwI	GGATC	1 cut(s)	1024
Aor51HI	AGCGCT	1 cut(s)	822
AoxI	GGCC	2 cut(s)	135, 855
ApeKI	GCWGC	1 cut(s)	313
ApoI	RAATTY	1 cut(s)	54
AspLEI	GCGC	1 cut(s)	823
AspS9I	GGNCC	2 cut(s)	895, 931
AsuHPI	GGTGA	1 cut(s)	872
AsuNHI	GCTAGC	2 cut(s)	202, 865
AvaII	GGWCC	2 cut(s)	895, 931
BalI	TGGCCA	1 cut(s)	137
BanII	GRGCYC	1 cut(s)	527
BauI	CACGAG	1 cut(s)	1062
BbsI	GAAGAC	1 cut(s)	1064
Bbv12I	GWGCWC	1 cut(s)	527
BbvCI	CCTCAGC	1 cut(s)	309
BbvI	GCAGC	1 cut(s)	300
BccI	CCATC	2 cut(s)	34, 799
BceAI	ACGGC	1 cut(s)	903
BciT130I	CCWGG	2 cut(s)	157, 1014
BclI	TGATCA	1 cut(s)	1000
BcoDI	GTCTC	2 cut(s)	488, 840
BcuI	ACTAGT	2 cut(s)	77, 392
BfaI	CTAG	7 cut(s)	78, 203, 393, 498, 866, 870, 1185
BfoI	RGCGCY	1 cut(s)	824
BfrI	CTTAAG	1 cut(s)	112
BisI	GCNGC	1 cut(s)	314
BlpI	GCTNAGC	1 cut(s)	914
BlsI	GCNGC	1 cut(s)	315
BmcAI	AGTACT	2 cut(s)	235, 977
Bme1390I	CCNGG	2 cut(s)	157, 1014
Bme18I	GGWCC	2 cut(s)	895, 931
BmgT120I	GGNCC	2 cut(s)	895, 931
BmiI	GGNNCC	1 cut(s)	161
BmrFI	CCNGG	2 cut(s)	157, 1014
BmrI	ACTGGG	1 cut(s)	1146
BmsI	GCATC	2 cut(s)	189, 683
BmtI	GCTAGC	2 cut(s)	206, 869
BmuI	ACTGGG	1 cut(s)	1146
BpiI	GAAGAC	1 cut(s)	1064
Bpu10I	CCTNAGC	1 cut(s)	309
Bpu1102I	GCTNAGC	1 cut(s)	914
BpuEI	CTTGAG	3 cut(s)	231, 549, 752
BsaJI	CCNNGG	2 cut(s)	132, 591
BsaXI	ACNNNNNCTCC	4 cut(s)	226, 256, 1117, 1147
Bse118I	RCCGGY	1 cut(s)	857
Bse1I	ACTGG	3 cut(s)	1141, 1153, 1168
BseBI	CCWGG	2 cut(s)	157, 1014
BseDI	CCNNGG	2 cut(s)	132, 591
BseGI	GGATG	2 cut(s)	198, 418
BseMII	CTCAG	2 cut(s)	323, 928
BseNI	ACTGG	3 cut(s)	1141, 1153, 1168
BseRI	GAGGAG	5 cut(s)	152, 234, 414, 862, 1138
BseXI	GCAGC	1 cut(s)	300
Bsh1236I	CGCG	2 cut(s)	275, 620
BshFI	GGCC	2 cut(s)	137, 857
BsiHKAI	GWGCWC	1 cut(s)	527
BsiSI	CCGG	1 cut(s)	858
BslFI	GGGAC	3 cut(s)	278, 954, 1153
BsmAI	GTCTC	2 cut(s)	488, 840
BsmFI	GGGAC	3 cut(s)	278, 954, 1153
BsmI	GAATGC	2 cut(s)	650, 778
BsnI	GGCC	2 cut(s)	137, 857
Bsp1286I	GDGCHC	1 cut(s)	527
Bsp1407I	TGTACA	1 cut(s)	336
Bsp143I	GATC	4 cut(s)	250, 484, 1000, 1016
Bsp1720I	GCTNAGC	1 cut(s)	914
Bsp19I	CCATGG	2 cut(s)	132, 591
BspACI	CCGC	6 cut(s)	120, 144, 275, 620, 898, 964
BspANI	GGCC	2 cut(s)	137, 857
BspCNI	CTCAG	2 cut(s)	322, 927
BspFNI	CGCG	2 cut(s)	275, 620
BspHI	TCATGA	2 cut(s)	661, 843
BspLI	GGNNCC	1 cut(s)	161
BspOI	GCTAGC	2 cut(s)	206, 869
BspPI	GGATC	1 cut(s)	1024
BspQI	GCTCTTC	1 cut(s)	716
BspTI	CTTAAG	1 cut(s)	112
BsrFI	RCCGGY	1 cut(s)	857
BsrGI	TGTACA	1 cut(s)	336
BsrI	ACTGG	3 cut(s)	1141, 1153, 1168
BssAI	RCCGGY	1 cut(s)	857
BssECI	CCNNGG	2 cut(s)	132, 591
BssMI	GATC	4 cut(s)	250, 484, 1000, 1016
BssSI	CACGAG	1 cut(s)	1062
BssT1I	CCWWGG	2 cut(s)	132, 591
Bst2BI	CACGAG	1 cut(s)	1062
Bst2UI	CCWGG	2 cut(s)	157, 1014
Bst4CI	ACNGT	3 cut(s)	215, 221, 365
Bst6I	CTCTTC	5 cut(s)	180, 716, 804, 1023, 1115
BstAFI	CTTAAG	1 cut(s)	112
BstAUI	TGTACA	1 cut(s)	336
BstC8I	GCNNGC	6 cut(s)	204, 282, 728, 825, 867, 911
BstDEI	CTNAG	2 cut(s)	309, 914
BstDSI	CCRYGG	2 cut(s)	132, 591
BstF5I	GGATG	2 cut(s)	198, 418
BstFNI	CGCG	2 cut(s)	275, 620
BstH2I	RGCGCY	1 cut(s)	824
BstHHI	GCGC	1 cut(s)	823
BstKTI	GATC	4 cut(s)	253, 487, 1003, 1019
BstMAI	GTCTC	2 cut(s)	488, 840
BstMBI	GATC	4 cut(s)	250, 484, 1000, 1016
BstMWI	GCNNNNNNNGC	5 cut(s)	143, 281, 617, 906, 915
BstNI	CCWGG	2 cut(s)	157, 1014
BstNSI	RCATGY	1 cut(s)	913
BstSCI	CCNGG	2 cut(s)	155, 1012
BstUI	CGCG	2 cut(s)	275, 620
BstV1I	GCAGC	1 cut(s)	300
BstV2I	GAAGAC	1 cut(s)	1064
BsuRI	GGCC	2 cut(s)	137, 857
BtgI	CCRYGG	2 cut(s)	132, 591
BtsCI	GGATG	2 cut(s)	198, 418
BtsIMutI	CAGTG	1 cut(s)	1167
Cac8I	GCNNGC	6 cut(s)	204, 282, 728, 825, 867, 911
CciI	TCATGA	2 cut(s)	661, 843
CfoI	GCGC	1 cut(s)	823
Cfr10I	RCCGGY	1 cut(s)	857
Cfr13I	GGNCC	2 cut(s)	895, 931
CseI	GACGC	1 cut(s)	617
Csp6I	GTAC	6 cut(s)	234, 337, 976, 1134, 1152, 1161
CviAII	CATG	5 cut(s)	133, 592, 662, 844, 910
CviQI	GTAC	6 cut(s)	234, 337, 976, 1134, 1152, 1161
DdeI	CTNAG	2 cut(s)	309, 914
DpnI	GATC	4 cut(s)	252, 486, 1002, 1018
DpnII	GATC	4 cut(s)	250, 484, 1000, 1016
DrdI	GACNNNNNNGTC	2 cut(s)	614, 902
DseDI	GACNNNNNNGTC	2 cut(s)	614, 902
EaeI	YGGCCR	1 cut(s)	135
Eam1104I	CTCTTC	5 cut(s)	180, 716, 804, 1023, 1115
EarI	CTCTTC	5 cut(s)	180, 716, 804, 1023, 1115
Ecl136II	GAGCTC	1 cut(s)	525
Eco130I	CCWWGG	2 cut(s)	132, 591
Eco24I	GRGCYC	1 cut(s)	527
Eco32I	GATATC	1 cut(s)	652
Eco47I	GGWCC	2 cut(s)	895, 931
Eco47III	AGCGCT	1 cut(s)	822
Eco53kI	GAGCTC	1 cut(s)	525
Eco57I	CTGAAG	2 cut(s)	306, 920
EcoICRI	GAGCTC	1 cut(s)	525
EcoO109I	RGGNCCY	1 cut(s)	931
EcoRII	CCWGG	2 cut(s)	155, 1012
EcoRV	GATATC	1 cut(s)	652
EcoT14I	CCWWGG	2 cut(s)	132, 591
EcoT22I	ATGCAT	1 cut(s)	676
EcoT38I	GRGCYC	1 cut(s)	527
ErhI	CCWWGG	2 cut(s)	132, 591
FaeI	CATG	5 cut(s)	136, 595, 665, 847, 913
FalI	AAGNNNNNCTT	2 cut(s)	95, 127
FaqI	GGGAC	3 cut(s)	278, 954, 1153
FatI	CATG	5 cut(s)	132, 591, 661, 843, 909
FauI	CCCGC	1 cut(s)	127
FbaI	TGATCA	1 cut(s)	1000
FblI	GTMKAC	1 cut(s)	430
Fnu4HI	GCNGC	1 cut(s)	314
FokI	GGATG	2 cut(s)	205, 405
FriOI	GRGCYC	1 cut(s)	527
Fsp4HI	GCNGC	1 cut(s)	314
FspBI	CTAG	7 cut(s)	78, 203, 393, 498, 866, 870, 1185
GlaI	GCGC	1 cut(s)	822
GluI	GCNGC	1 cut(s)	314
HaeII	RGCGCY	1 cut(s)	824
HaeIII	GGCC	2 cut(s)	137, 857
HapII	CCGG	1 cut(s)	858
HgaI	GACGC	1 cut(s)	617
HhaI	GCGC	1 cut(s)	823
Hin1II	CATG	5 cut(s)	136, 595, 665, 847, 913
Hin6I	GCGC	1 cut(s)	821
HinP1I	GCGC	1 cut(s)	821
HincII	GTYRAC	2 cut(s)	431, 994
HindII	GTYRAC	2 cut(s)	431, 994
HindIII	AAGCTT	1 cut(s)	288
HinfI	GANTC	8 cut(s)	65, 400, 406, 509, 695, 743, 833, 1060
HpaII	CCGG	1 cut(s)	858
HphI	GGTGA	1 cut(s)	872
Hpy166II	GTNNAC	3 cut(s)	431, 994, 1229
Hpy188I	TCNGA	9 cut(s)	75, 361, 399, 405, 411, 514, 679, 748, 832
Hpy188III	TCNNGA	8 cut(s)	62, 248, 254, 329, 566, 662, 844, 1204
Hpy8I	GTNNAC	3 cut(s)	431, 994, 1229
Hpy99I	CGWCG	2 cut(s)	16, 432
HpyAV	CCTTC	3 cut(s)	280, 847, 944
HpyCH4III	ACNGT	3 cut(s)	215, 221, 365
HpyCH4IV	ACGT	2 cut(s)	86, 1095
HpyCH4V	TGCA	4 cut(s)	674, 718, 800, 1093
HpyF10VI	GCNNNNNNNGC	5 cut(s)	143, 281, 617, 906, 915
HpyF3I	CTNAG	2 cut(s)	309, 914
HpySE526I	ACGT	2 cut(s)	86, 1095
Hsp92II	CATG	5 cut(s)	136, 595, 665, 847, 913
HspAI	GCGC	1 cut(s)	821
Ksp22I	TGATCA	1 cut(s)	1000
Kzo9I	GATC	4 cut(s)	250, 484, 1000, 1016
LguI	GCTCTTC	1 cut(s)	716
LmnI	GCTCC	4 cut(s)	165, 277, 530, 885
Lsp1109I	GCAGC	1 cut(s)	300
LweI	GCATC	2 cut(s)	189, 683
MaeI	CTAG	7 cut(s)	78, 203, 393, 498, 866, 870, 1185
MaeII	ACGT	2 cut(s)	86, 1095
MaeIII	GTNAC	3 cut(s)	215, 365, 785
MalI	GATC	4 cut(s)	252, 486, 1002, 1018
MboI	GATC	4 cut(s)	250, 484, 1000, 1016
MfeI	CAATTG	2 cut(s)	378, 612
MhlI	GDGCHC	1 cut(s)	527
MlsI	TGGCCA	1 cut(s)	137
MluCI	AATT	6 cut(s)	54, 340, 378, 542, 612, 779
MluNI	TGGCCA	1 cut(s)	137
MlyI	GAGTC	6 cut(s)	74, 409, 415, 752, 842, 1054
MmeI	TCCRAC	4 cut(s)	98, 107, 192, 936
Mox20I	TGGCCA	1 cut(s)	137
Mph1103I	ATGCAT	1 cut(s)	676
MscI	TGGCCA	1 cut(s)	137
MseI	TTAA	3 cut(s)	113, 210, 1233
MslI	CAYNNNNRTG	1 cut(s)	593
Msp20I	TGGCCA	1 cut(s)	137
MspA1I	CMGCKG	1 cut(s)	313
MspCI	CTTAAG	1 cut(s)	112
MspI	CCGG	1 cut(s)	858
MspR9I	CCNGG	2 cut(s)	157, 1014
MunI	CAATTG	2 cut(s)	378, 612
Mva1269I	GAATGC	2 cut(s)	650, 778
MvaI	CCWGG	2 cut(s)	157, 1014
MvnI	CGCG	2 cut(s)	275, 620
MwoI	GCNNNNNNNGC	5 cut(s)	143, 281, 617, 906, 915
NcoI	CCATGG	2 cut(s)	132, 591
NdeII	GATC	4 cut(s)	250, 484, 1000, 1016
NheI	GCTAGC	2 cut(s)	202, 865
NlaIII	CATG	5 cut(s)	136, 595, 665, 847, 913
NlaIV	GGNNCC	1 cut(s)	161
NsiI	ATGCAT	1 cut(s)	676
NspI	RCATGY	1 cut(s)	913
OliI	CACNNNNGTG	1 cut(s)	593
PaeI	GCATGC	1 cut(s)	913
PagI	TCATGA	2 cut(s)	661, 843
PciSI	GCTCTTC	1 cut(s)	716
PctI	GAATGC	2 cut(s)	650, 778
PfeI	GAWTC	2 cut(s)	509, 695
PkrI	GCNGC	1 cut(s)	315
PleI	GAGTC	6 cut(s)	73, 408, 414, 751, 841, 1054
PpsI	GAGTC	6 cut(s)	73, 408, 414, 751, 841, 1054
PpuMI	RGGWCCY	1 cut(s)	931
Psp124BI	GAGCTC	1 cut(s)	527
Psp1406I	AACGTT	1 cut(s)	86
Psp5II	RGGWCCY	1 cut(s)	931
Psp6I	CCWGG	2 cut(s)	155, 1012
PspGI	CCWGG	2 cut(s)	155, 1012
PspN4I	GGNNCC	1 cut(s)	161
PspPI	GGNCC	2 cut(s)	895, 931
PspPPI	RGGWCCY	1 cut(s)	931
PsrI	GAACNNNNNNTAC	2 cut(s)	959, 991
PvuII	CAGCTG	1 cut(s)	313
RsaI	GTAC	6 cut(s)	235, 338, 977, 1135, 1153, 1162
RsaNI	GTAC	6 cut(s)	234, 337, 976, 1134, 1152, 1161
RseI	CAYNNNNRTG	1 cut(s)	593
SacI	GAGCTC	1 cut(s)	527
SalI	GTCGAC	1 cut(s)	429
SapI	GCTCTTC	1 cut(s)	716
SaqAI	TTAA	3 cut(s)	113, 210, 1233
SatI	GCNGC	1 cut(s)	314
Sau3AI	GATC	4 cut(s)	250, 484, 1000, 1016
Sau96I	GGNCC	2 cut(s)	895, 931
ScaI	AGTACT	2 cut(s)	235, 977
SchI	GAGTC	6 cut(s)	74, 409, 415, 752, 842, 1054
ScrFI	CCNGG	2 cut(s)	157, 1014
SduI	GDGCHC	1 cut(s)	527
SfaNI	GCATC	2 cut(s)	189, 683
SinI	GGWCC	2 cut(s)	895, 931
SmiMI	CAYNNNNRTG	1 cut(s)	593
SmlI	CTYRAG	4 cut(s)	112, 246, 564, 731
SmoI	CTYRAG	4 cut(s)	112, 246, 564, 731
SpeI	ACTAGT	2 cut(s)	77, 392
SphI	GCATGC	1 cut(s)	913
Sse9I	AATT	6 cut(s)	54, 340, 378, 542, 612, 779
SsiI	CCGC	6 cut(s)	120, 144, 275, 620, 898, 964
SspMI	CTAG	7 cut(s)	78, 203, 393, 498, 866, 870, 1185
SstI	GAGCTC	1 cut(s)	527
StyD4I	CCNGG	2 cut(s)	155, 1012
StyI	CCWWGG	2 cut(s)	132, 591
TaaI	ACNGT	3 cut(s)	215, 221, 365
TaiI	ACGT	2 cut(s)	89, 1098
TaqI	TCGA	2 cut(s)	430, 701
TasI	AATT	6 cut(s)	54, 340, 378, 542, 612, 779
TatI	WGTACW	3 cut(s)	233, 336, 975
TfiI	GAWTC	2 cut(s)	509, 695
Tru1I	TTAA	3 cut(s)	113, 210, 1233
Tru9I	TTAA	3 cut(s)	113, 210, 1233
TscAI	CASTG	1 cut(s)	1174
TseI	GCWGC	1 cut(s)	313
TspDTI	ATGAA	7 cut(s)	47, 209, 407, 650, 708, 832, 1133
TspRI	CASTG	1 cut(s)	1174
Vha464I	CTTAAG	1 cut(s)	112
VpaK11BI	GGWCC	2 cut(s)	895, 931
XapI	RAATTY	1 cut(s)	54
XceI	RCATGY	1 cut(s)	913
XmiI	GTMKAC	1 cut(s)	430
XspI	CTAG	7 cut(s)	78, 203, 393, 498, 866, 870, 1185
ZrmI	AGTACT	2 cut(s)	235, 977
Zsp2I	ATGCAT	1 cut(s)	676

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.