Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0002133

Physical Location & Seq

Genomic Coordinates Reverse (-)

24068130 .. 24069221

Gene Structure 1092 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g21420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGCAAATTAAGATGATGGATCATATGTTTAGAAGAGGAAGACTGGAAATGGCAATCTGGGCGGCAAAGGTTTTGCTGCTTTGTGTAGGGACAGTGTCGACAGCGGTATTCTTCAAAGCAGCAATCATTCCTTACCTGCTCAACCTCTGTCTTTCCCTCGTCCCCCACATCTGGACCTCCTTCAAAAGCTGCTGCTCCTTATCCCCTCTTTACATCTACATCATCCTCAACCTTGTCATCCTCACCATCGCCGCCTCCTCCGCTTTGCAACGCAGAAACCACAAAAACAATGCCAAGGCCACCGACAGCATTGACCCCTCTCACGATTTTATTTACAGTCCAGACAACAGCCCCGACAAGAAGTACAACAGCAGCCAATCCCAGATGTTGTCCGCCCAGCCACAGCAGCAGCAGCAGGACACATTAATCCAAAGTCATCCGGAAGATGATGCAACTTCTCTATTTTCTTCATCATCTCTGGACAAGAATCTGTACTCATCGAATAATGAGATGATGAGTTGGCTTGACATTCACACAGTACAAGAAGGTGTCGTGCCAAGTACTAGTCTGAGTACTAACACTACTACCTTTGATTACGATGATCATCAGCGATCTGGGACGTCACTGGAAAAGTGCTGCGCTCACTCGATGCCAACAGAGGAGGAGGTGGAGGCAGATGATGACACCAAGACATTGGACACGACATGGAAGGCCATCATGGAGGGGCAAGGCAAGCCAAGTGGTAAGCACCTCAAAAAGAGTGACACTTGGGACACGCCTCCTCGCCTAAACGGCCGGCAATTGGCCATCACAAGTACCAAATTCAAAGTTCCACAACGTCAACTAAATCAATGTAACTTTGATGATGGTCACGATGACGAGGACGATGCAGTGACATGGGCTCGCCGGGAGCTTAAGAAGTCGGACACATTTAGCGACAGAGGGTCGTTGAGAAGGGAAAAGTCGATGACTCAGGAAGAGTTGAACCAGCGAGCAGAGGCCTTCATCAAGAAGTTCAACAACGACATCAGGCTTCAGAGGTTAGAATCTGATCAACGTCGTTTCAGGGAGATTGCTAGCACCGGAATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4408 DUF761

Protein Analysis

364

Amino Acids

41.28

Weight (kDa)

6.08

Isoelectric Point (pI)

43.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4408	PF14364	55 - 87	2.5e-07	Domain of unknown function (DUF4408)
DUF761	PF05553	325 - 357	4.4e-10	Cotton fibre expressed protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002133)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48405 AT3G17680 AT3G17680 AT3G17680
fragaria_vesca	FvH4_5g18280 FvH4_5g18280 FvH4_5g18280 FvH4_5g18280 FvH4_5g18280 FvH4_5g18290
malus_domestica	MD06G1238400.v1.1 MD06G1238700.v1.1 MD14G1244700.v1.1 MD14G1244900.v1.1
prunus_persica	Prupe.5G242300_v2.0.a1 Prupe.5G242300_v2.0.a1 Prupe.5G242300_v2.0.a1 Prupe.5G242300_v2.0.a1 Prupe.5G242300_v2.0.a1 Prupe.5G242300_v2.0.a1 Prupe.5G242600_v2.0.a1
pyrus_communis	pycom06g21390 pycom06g21420 pycom14g20590
rosa_chinensis	RchiOBHm_Chr7g0177291 RchiOBHm_Chr7g0177301
rosa_laevigata	RLG00000005548
rosa_multiflora	Rmu_sc0005310.1_g000008
rosa_roxburghii	Rroxscaffold_3G00275960 Rroxscaffold_3G00275970
rosa_rugosa	Rorug06G0404500 Rorug06G0404600 Rorug06G0404700 Rorug06G0404800
rosa_samantha	Rh7AG004500 Rh7AG004600 Rh7BG004400 Rh7BG004500 Rh7CG004300 Rh7CG004400 Rh7DG004300 Rh7DG004400
rosa_wichuraiana	Rw7G000370 Rw7G000380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	623
Acc36I	ACCTGC	1 cut(s)	144
AccI	GTMKAC	1 cut(s)	98
AccIII	TCCGGA	1 cut(s)	439
AciI	CCGC	5 cut(s)	62, 104, 252, 261, 393
AclWI	GGATC	1 cut(s)	27
AcoI	YGGCCR	2 cut(s)	793, 804
AcsI	RAATTY	2 cut(s)	821, 1086
AcuI	CTGAAG	1 cut(s)	1019
AcyI	GRCGYC	1 cut(s)	620
AfaI	GTAC	6 cut(s)	365, 494, 540, 562, 574, 817
AfiI	CCNNNNNNNGG	2 cut(s)	171, 802
AflII	CTTAAG	1 cut(s)	914
AgsI	TTSAA	5 cut(s)	115, 184, 826, 985, 1018
AhdI	GACNNNNNGTC	1 cut(s)	943
AhlI	ACTAGT	1 cut(s)	563
AluBI	AGCT	2 cut(s)	189, 913
AluI	AGCT	2 cut(s)	189, 913
AlwI	GGATC	1 cut(s)	27
Aor13HI	TCCGGA	1 cut(s)	439
AoxI	GGCC	5 cut(s)	297, 711, 793, 804, 999
ApeKI	GCWGC	9 cut(s)	76, 119, 189, 192, 372, 406, 409, 412, 636
ApoI	RAATTY	2 cut(s)	821, 1086
AseI	ATTAAT	1 cut(s)	425
AspLEI	GCGC	1 cut(s)	641
AspS9I	GGNCC	1 cut(s)	174
AsuC2I	CCSGG	1 cut(s)	908
AsuHPI	GGTGA	1 cut(s)	235
AsuNHI	GCTAGC	1 cut(s)	1076
AvaII	GGWCC	1 cut(s)	174
BalI	TGGCCA	1 cut(s)	806
BanII	GRGCYC	1 cut(s)	904
BbsI	GAAGAC	1 cut(s)	46
BbvI	GCAGC	9 cut(s)	63, 131, 176, 179, 384, 418, 421, 424, 623
BccI	CCATC	5 cut(s)	10, 254, 722, 815, 860
BceAI	ACGGC	1 cut(s)	808
BcgI	CGANNNNNNTGC	2 cut(s)	869, 903
BclI	TGATCA	2 cut(s)	601, 1051
BcnI	CCSGG	1 cut(s)	908
BcuI	ACTAGT	1 cut(s)	563
BfaI	CTAG	2 cut(s)	564, 1077
BfrI	CTTAAG	1 cut(s)	914
BfuAI	ACCTGC	1 cut(s)	144
BglI	GCCNNNNNGGC	1 cut(s)	792
BmcAI	AGTACT	2 cut(s)	562, 574
Bme1390I	CCNGG	1 cut(s)	908
Bme18I	GGWCC	1 cut(s)	174
BmeRI	GACNNNNNGTC	1 cut(s)	943
BmgT120I	GGNCC	1 cut(s)	174
BmrFI	CCNGG	1 cut(s)	908
BmsI	GCATC	3 cut(s)	439, 639, 877
BmtI	GCTAGC	1 cut(s)	1080
BpiI	GAAGAC	1 cut(s)	46
BpuMI	CCSGG	1 cut(s)	908
BsaBI	GATNNNNATC	1 cut(s)	603
BsaHI	GRCGYC	1 cut(s)	620
BsaJI	CCNNGG	1 cut(s)	294
BsaWI	WCCGGW	2 cut(s)	439, 1082
Bsc4I	CCNNNNNNNGG	2 cut(s)	171, 802
Bse118I	RCCGGY	1 cut(s)	795
Bse1I	ACTGG	2 cut(s)	48, 630
Bse8I	GATNNNNATC	1 cut(s)	603
BseAI	TCCGGA	1 cut(s)	439
BseDI	CCNNGG	1 cut(s)	294
BseGI	GGATG	3 cut(s)	222, 237, 436
BseJI	GATNNNNATC	1 cut(s)	603
BseLI	CCNNNNNNNGG	2 cut(s)	171, 802
BseMII	CTCAG	2 cut(s)	560, 986
BseNI	ACTGG	2 cut(s)	48, 630
BseRI	GAGGAG	4 cut(s)	247, 674, 677, 771
BseX3I	CGGCCG	1 cut(s)	793
BseXI	GCAGC	9 cut(s)	63, 131, 176, 179, 384, 418, 421, 424, 623
BseYI	CCCAGC	1 cut(s)	396
Bsh1285I	CGRYCG	1 cut(s)	796
BshFI	GGCC	5 cut(s)	299, 713, 795, 806, 1001
BsiEI	CGRYCG	1 cut(s)	796
BsiSI	CCGG	4 cut(s)	440, 796, 907, 1083
BslFI	GGGAC	4 cut(s)	103, 146, 631, 785
BslI	CCNNNNNNNGG	2 cut(s)	171, 802
BsmFI	GGGAC	4 cut(s)	103, 146, 631, 785
BsnI	GGCC	5 cut(s)	299, 713, 795, 806, 1001
Bsp1286I	GDGCHC	1 cut(s)	904
Bsp13I	TCCGGA	1 cut(s)	439
Bsp143I	GATC	4 cut(s)	19, 601, 611, 1051
BspACI	CCGC	5 cut(s)	62, 104, 252, 261, 393
BspANI	GGCC	5 cut(s)	299, 713, 795, 806, 1001
BspCNI	CTCAG	2 cut(s)	561, 985
BspEI	TCCGGA	1 cut(s)	439
BspMI	ACCTGC	1 cut(s)	144
BspOI	GCTAGC	1 cut(s)	1080
BspPI	GGATC	1 cut(s)	27
BspTI	CTTAAG	1 cut(s)	914
BsrFI	RCCGGY	1 cut(s)	795
BsrI	ACTGG	2 cut(s)	48, 630
BssAI	RCCGGY	1 cut(s)	795
BssECI	CCNNGG	1 cut(s)	294
BssMI	GATC	4 cut(s)	19, 601, 611, 1051
BssNI	GRCGYC	1 cut(s)	620
BssT1I	CCWWGG	1 cut(s)	294
Bst4CI	ACNGT	3 cut(s)	94, 338, 538
Bst6I	CTCTTC	2 cut(s)	28, 972
BstACI	GRCGYC	1 cut(s)	620
BstAFI	CTTAAG	1 cut(s)	914
BstC8I	GCNNGC	5 cut(s)	734, 797, 904, 993, 1078
BstDEI	CTNAG	2 cut(s)	569, 972
BstF5I	GGATG	3 cut(s)	222, 237, 436
BstHHI	GCGC	1 cut(s)	641
BstKTI	GATC	4 cut(s)	22, 604, 614, 1054
BstMBI	GATC	4 cut(s)	19, 601, 611, 1051
BstMCI	CGRYCG	1 cut(s)	796
BstMWI	GCNNNNNNNGC	6 cut(s)	59, 260, 406, 412, 733, 792
BstSCI	CCNGG	1 cut(s)	906
BstV1I	GCAGC	9 cut(s)	63, 131, 176, 179, 384, 418, 421, 424, 623
BstV2I	GAAGAC	1 cut(s)	46
BstXI	CCANNNNNNTGG	1 cut(s)	694
BstZI	CGGCCG	1 cut(s)	793
BsuRI	GGCC	5 cut(s)	299, 713, 795, 806, 1001
BtgZI	GCGATG	1 cut(s)	232
BtsCI	GGATG	3 cut(s)	222, 237, 436
BtsI	GCAGTG	1 cut(s)	897
BtsIMutI	CAGTG	3 cut(s)	99, 623, 897
BveI	ACCTGC	1 cut(s)	144
Cac8I	GCNNGC	5 cut(s)	734, 797, 904, 993, 1078
CfoI	GCGC	1 cut(s)	641
Cfr10I	RCCGGY	1 cut(s)	795
Cfr13I	GGNCC	1 cut(s)	174
Csp6I	GTAC	6 cut(s)	364, 493, 539, 561, 573, 816
CspCI	CAANNNNNGTGG	2 cut(s)	721, 756
CviAII	CATG	3 cut(s)	705, 718, 897
CviQI	GTAC	6 cut(s)	364, 493, 539, 561, 573, 816
DdeI	CTNAG	2 cut(s)	569, 972
DpnI	GATC	4 cut(s)	21, 603, 613, 1053
DpnII	GATC	4 cut(s)	19, 601, 611, 1051
DriI	GACNNNNNGTC	1 cut(s)	943
EaeI	YGGCCR	2 cut(s)	793, 804
EagI	CGGCCG	1 cut(s)	793
Eam1104I	CTCTTC	2 cut(s)	28, 972
Eam1105I	GACNNNNNGTC	1 cut(s)	943
EarI	CTCTTC	2 cut(s)	28, 972
EciI	GGCGGA	1 cut(s)	382
EclXI	CGGCCG	1 cut(s)	793
Eco130I	CCWWGG	1 cut(s)	294
Eco147I	AGGCCT	1 cut(s)	1001
Eco24I	GRGCYC	1 cut(s)	904
Eco47I	GGWCC	1 cut(s)	174
Eco52I	CGGCCG	1 cut(s)	793
Eco57I	CTGAAG	1 cut(s)	1019
EcoT14I	CCWWGG	1 cut(s)	294
EcoT38I	GRGCYC	1 cut(s)	904
ErhI	CCWWGG	1 cut(s)	294
FaeI	CATG	3 cut(s)	708, 721, 900
FaiI	YATR	5 cut(s)	24, 26, 706, 719, 898
FaqI	GGGAC	4 cut(s)	103, 146, 631, 785
FatI	CATG	3 cut(s)	704, 717, 896
FauNDI	CATATG	1 cut(s)	24
FbaI	TGATCA	2 cut(s)	601, 1051
FblI	GTMKAC	1 cut(s)	98
FokI	GGATG	3 cut(s)	209, 224, 423
FriOI	GRGCYC	1 cut(s)	904
FspBI	CTAG	2 cut(s)	564, 1077
GlaI	GCGC	1 cut(s)	640
GsaI	CCCAGC	1 cut(s)	400
HaeIII	GGCC	5 cut(s)	299, 713, 795, 806, 1001
HapII	CCGG	4 cut(s)	440, 796, 907, 1083
HhaI	GCGC	1 cut(s)	641
Hin1I	GRCGYC	1 cut(s)	620
Hin1II	CATG	3 cut(s)	708, 721, 900
Hin6I	GCGC	1 cut(s)	639
HinP1I	GCGC	1 cut(s)	639
HincII	GTYRAC	2 cut(s)	99, 842
HindII	GTYRAC	2 cut(s)	99, 842
HinfI	GANTC	3 cut(s)	487, 970, 1046
HpaII	CCGG	4 cut(s)	440, 796, 907, 1083
HphI	GGTGA	1 cut(s)	235
Hpy166II	GTNNAC	2 cut(s)	99, 842
Hpy188I	TCNGA	4 cut(s)	570, 925, 1038, 1051
Hpy188III	TCNNGA	8 cut(s)	172, 323, 341, 440, 479, 872, 974, 1009
Hpy8I	GTNNAC	2 cut(s)	99, 842
Hpy99I	CGWCG	1 cut(s)	1062
HpyAV	CCTTC	5 cut(s)	190, 539, 703, 948, 1012
HpyCH4III	ACNGT	3 cut(s)	94, 338, 538
HpyCH4IV	ACGT	3 cut(s)	620, 838, 1057
HpyCH4V	TGCA	4 cut(s)	4, 268, 452, 890
HpyF10VI	GCNNNNNNNGC	6 cut(s)	59, 260, 406, 412, 733, 792
HpyF3I	CTNAG	2 cut(s)	569, 972
HpySE526I	ACGT	3 cut(s)	620, 838, 1057
Hsp92I	GRCGYC	1 cut(s)	620
Hsp92II	CATG	3 cut(s)	708, 721, 900
HspAI	GCGC	1 cut(s)	639
Kpn2I	TCCGGA	1 cut(s)	439
KroI	GCCGGC	1 cut(s)	795
KroNI	GCCGGC	1 cut(s)	797
Ksp22I	TGATCA	2 cut(s)	601, 1051
Kzo9I	GATC	4 cut(s)	19, 601, 611, 1051
LmnI	GCTCC	2 cut(s)	200, 910
Lsp1109I	GCAGC	9 cut(s)	63, 131, 176, 179, 384, 418, 421, 424, 623
LweI	GCATC	3 cut(s)	439, 639, 877
MaeI	CTAG	2 cut(s)	564, 1077
MaeII	ACGT	3 cut(s)	620, 838, 1057
MaeIII	GTNAC	5 cut(s)	621, 761, 854, 869, 892
MalI	GATC	4 cut(s)	21, 603, 613, 1053
MboI	GATC	4 cut(s)	19, 601, 611, 1051
MboII	GAAGA	6 cut(s)	45, 51, 103, 455, 459, 989
MfeI	CAATTG	1 cut(s)	800
MhlI	GDGCHC	1 cut(s)	904
MlsI	TGGCCA	1 cut(s)	806
MluCI	AATT	4 cut(s)	6, 800, 821, 1086
MluNI	TGGCCA	1 cut(s)	806
MlyI	GAGTC	1 cut(s)	964
MmeI	TCCRAC	1 cut(s)	903
Mox20I	TGGCCA	1 cut(s)	806
MroI	TCCGGA	1 cut(s)	439
MroNI	GCCGGC	1 cut(s)	795
MscI	TGGCCA	1 cut(s)	806
MseI	TTAA	3 cut(s)	9, 425, 915
Msp20I	TGGCCA	1 cut(s)	806
MspA1I	CMGCKG	1 cut(s)	104
MspCI	CTTAAG	1 cut(s)	914
MspI	CCGG	4 cut(s)	440, 796, 907, 1083
MspR9I	CCNGG	1 cut(s)	908
MunI	CAATTG	1 cut(s)	800
MwoI	GCNNNNNNNGC	6 cut(s)	59, 260, 406, 412, 733, 792
NaeI	GCCGGC	1 cut(s)	797
NciI	CCSGG	1 cut(s)	908
NdeI	CATATG	1 cut(s)	24
NdeII	GATC	4 cut(s)	19, 601, 611, 1051
NgoMIV	GCCGGC	1 cut(s)	795
NheI	GCTAGC	1 cut(s)	1076
NlaIII	CATG	3 cut(s)	708, 721, 900
NmuCI	GTSAC	4 cut(s)	621, 761, 869, 892
PceI	AGGCCT	1 cut(s)	1001
PdiI	GCCGGC	1 cut(s)	797
PfeI	GAWTC	2 cut(s)	487, 1046
PflFI	GACNNNGTC	1 cut(s)	94
PleI	GAGTC	1 cut(s)	964
PpsI	GAGTC	1 cut(s)	964
PshBI	ATTAAT	1 cut(s)	425
PspFI	CCCAGC	1 cut(s)	396
PspPI	GGNCC	1 cut(s)	174
PsyI	GACNNNGTC	1 cut(s)	94
RsaI	GTAC	6 cut(s)	365, 494, 540, 562, 574, 817
RsaNI	GTAC	6 cut(s)	364, 493, 539, 561, 573, 816
SalI	GTCGAC	1 cut(s)	97
SaqAI	TTAA	3 cut(s)	9, 425, 915
Sau3AI	GATC	4 cut(s)	19, 601, 611, 1051
Sau96I	GGNCC	1 cut(s)	174
ScaI	AGTACT	2 cut(s)	562, 574
SchI	GAGTC	1 cut(s)	964
ScrFI	CCNGG	1 cut(s)	908
SduI	GDGCHC	1 cut(s)	904
SfaNI	GCATC	3 cut(s)	439, 639, 877
SinI	GGWCC	1 cut(s)	174
SmlI	CTYRAG	1 cut(s)	914
SmoI	CTYRAG	1 cut(s)	914
SpeI	ACTAGT	1 cut(s)	563
Sse9I	AATT	4 cut(s)	6, 800, 821, 1086
SseBI	AGGCCT	1 cut(s)	1001
SsiI	CCGC	5 cut(s)	62, 104, 252, 261, 393
SspMI	CTAG	2 cut(s)	564, 1077
StuI	AGGCCT	1 cut(s)	1001
StyD4I	CCNGG	1 cut(s)	906
StyI	CCWWGG	1 cut(s)	294
TaaI	ACNGT	3 cut(s)	94, 338, 538
TaiI	ACGT	3 cut(s)	623, 841, 1060
TaqI	TCGA	4 cut(s)	98, 500, 647, 965
TasI	AATT	4 cut(s)	6, 800, 821, 1086
TatI	WGTACW	5 cut(s)	363, 492, 538, 560, 572
TauI	GCSGC	2 cut(s)	65, 254
TfiI	GAWTC	2 cut(s)	487, 1046
Tru1I	TTAA	3 cut(s)	9, 425, 915
Tru9I	TTAA	3 cut(s)	9, 425, 915
TscAI	CASTG	3 cut(s)	99, 630, 897
TseFI	GTSAC	4 cut(s)	621, 761, 869, 892
TseI	GCWGC	9 cut(s)	76, 119, 189, 192, 372, 406, 409, 412, 636
Tsp45I	GTSAC	4 cut(s)	621, 761, 869, 892
TspDTI	ATGAA	2 cut(s)	459, 994
TspRI	CASTG	3 cut(s)	99, 630, 897
Tth111I	GACNNNGTC	1 cut(s)	94
Vha464I	CTTAAG	1 cut(s)	914
VpaK11BI	GGWCC	1 cut(s)	174
VspI	ATTAAT	1 cut(s)	425
XapI	RAATTY	2 cut(s)	821, 1086
XmiI	GTMKAC	1 cut(s)	98
XspI	CTAG	2 cut(s)	564, 1077
ZraI	GACGTC	1 cut(s)	621
ZrmI	AGTACT	2 cut(s)	562, 574

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.