RchiOBHm_Chr7g0177301

KIP1-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0002133
Physical Location & Seq
Forward (+)
334455 .. 337854
3400 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ15791

Sequence Viewer

Length: 1227 bp
ATGGAGAAACCGACGACACCACCACCACCATCATCAGCTTCTTCTGTTCAAATTCATCAGGAGTCAGTTCCGACTAGTCCAACCTTGTCAAGCACAAGGAAGATGAGCTTAAGCACCGCCCCGACCACCATGGCCACCACCGCCAAACCGACCTGGCTCCTCTCCAACCTCGCCGATGTGGAAGAGAGGATGAAGATGCTAGCGTTTAACAGTAAAACTCCTCAAGATCAAGACAATGGGGACACCTTCGCGGAGCGAGCTGAAGCTTACTACAAAACACGCCCTCAGCTGCTATCCCTACTTCAAGACTTGTACAATTCCTATCTCACTCTCTCTGACCGTTACATTCAAACAATCACCAAAACTACTAGTCTGAGTCAGAGTCAGATTTTTCATCCTCCTCGTCGACAATCTTCTCAAACCTCAACCATTGAATACTATGATTACTATGAGCAGCAAGATCAATATGAGACTAGCCAGAATGATTCAGATGTGGAGAGCTCCCTCTCGTATCAGCAATTTCCCACATCACTACTTGCTCAAGATGATGATGATGATGCCACCATGGTGTCAAGTTTTGACGCAATTGTCGCGGAGATTGTGATAAAAAATGTGGAATGCGATATCCTACTTCATGAGGTCAATGCATCGGAGAGGCAACAAAATGAATCATCGAGGAAGATAGAGTTGCAGAAGAGCTTGCTTGAGGTTTTGGAGTCTGAAAGGCTCATACTACTGAATGAGAATGCTAAATTGGGTTACAGAGTGGGTGCATTGATGGAAGAGAACAAAGCGCTTGCCTCCGAGTCTCTGTTCATGAGGAGGAAGGCCGGTGAGCTAGCTAGGTGTTTGCTCCAAATGAGGGAGGACCGCAGGGTCAGCATGCTCAGCCGTAAGATAGAGGACCTTCAGGGACAGATTTATGGGTTGGAGAAGCGGAACAAGGAGTACTACCAGCAACTTGTCAACAATGATCACTCACAACTAGGATCACTTGAAGAAGAGAAGAATAGTAGCAACAACAAGAAGAAGACTCGTGGTAGAAGTAGTAATGAGGTGGATTTGCACGTTTGCTTTCAAATAGGAAAGATGAAGAGGAGAGGTGGTACTGGGACGAGGACTGGTACGAGGGGTACTGGCACTGACAAGAAAGGTTCTAGTTGGTGGGGAAAGGTCAAGAACATAGACTTGTTTCTATGTGGACTTAACCCAACTACTACTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KIP1

Protein Analysis

408

Amino Acids

46.2

Weight (kDa)

5.91

Isoelectric Point (pI)

58.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KIP1 PF07765 47 - 115 7.3e-12 KIP1-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 587, 875
AccI GTMKAC 1 cut(s) 406
AccII CGCG 2 cut(s) 251, 593
AciI CCGC 6 cut(s) 117, 141, 251, 593, 871, 937
AclWI GGATC 1 cut(s) 997
AcoI YGGCCR 1 cut(s) 132
AcsI RAATTY 1 cut(s) 51
AcuI CTGAAG 2 cut(s) 282, 893
AfaI GTAC 5 cut(s) 314, 950, 1108, 1126, 1135
AfeI AGCGCT 1 cut(s) 795
AfiI CCNNNNNNNGG 1 cut(s) 862
AflII CTTAAG 1 cut(s) 109
AgsI TTSAA 6 cut(s) 50, 305, 350, 434, 998, 1079
AhlI ACTAGT 2 cut(s) 74, 368
AjnI CCWGG 1 cut(s) 152
AjuI GAANNNNNNNTTGG 2 cut(s) 737, 769
AleI CACNNNNGTG 1 cut(s) 566
AluBI AGCT 9 cut(s) 38, 108, 260, 266, 289, 501, 699, 838, 842
AluI AGCT 9 cut(s) 38, 108, 260, 266, 289, 501, 699, 838, 842
Alw21I GWGCWC 1 cut(s) 503
Alw26I GTCTC 2 cut(s) 464, 813
AlwI GGATC 1 cut(s) 997
Aor51HI AGCGCT 1 cut(s) 795
AoxI GGCC 2 cut(s) 132, 828
ApeKI GCWGC 2 cut(s) 289, 454
ApoI RAATTY 1 cut(s) 51
AspLEI GCGC 1 cut(s) 796
AspS9I GGNCC 2 cut(s) 868, 904
AsuHPI GGTGA 2 cut(s) 349, 845
AsuNHI GCTAGC 2 cut(s) 199, 838
AvaII GGWCC 2 cut(s) 868, 904
BalI TGGCCA 1 cut(s) 134
BanII GRGCYC 1 cut(s) 503
BauI CACGAG 1 cut(s) 1035
BbsI GAAGAC 1 cut(s) 1037
Bbv12I GWGCWC 1 cut(s) 503
BbvCI CCTCAGC 1 cut(s) 285
BbvI GCAGC 2 cut(s) 276, 466
BccI CCATC 2 cut(s) 37, 772
BceAI ACGGC 1 cut(s) 876
BciT130I CCWGG 1 cut(s) 154
BclI TGATCA 1 cut(s) 973
BcoDI GTCTC 2 cut(s) 464, 813
BcuI ACTAGT 2 cut(s) 74, 368
BfaI CTAG 8 cut(s) 75, 200, 369, 474, 839, 843, 986, 1158
BfoI RGCGCY 1 cut(s) 797
BfrI CTTAAG 1 cut(s) 109
BisI GCNGC 2 cut(s) 290, 455
BlpI GCTNAGC 1 cut(s) 887
BlsI GCNGC 2 cut(s) 291, 456
BmcAI AGTACT 1 cut(s) 950
Bme1390I CCNGG 1 cut(s) 154
Bme18I GGWCC 2 cut(s) 868, 904
BmgT120I GGNCC 2 cut(s) 868, 904
BmiI GGNNCC 1 cut(s) 158
BmrFI CCNGG 1 cut(s) 154
BmrI ACTGGG 1 cut(s) 1119
BmsI GCATC 3 cut(s) 186, 547, 656
BmtI GCTAGC 2 cut(s) 203, 842
BmuI ACTGGG 1 cut(s) 1119
BpiI GAAGAC 1 cut(s) 1037
Bpu10I CCTNAGC 1 cut(s) 285
Bpu1102I GCTNAGC 1 cut(s) 887
BpuEI CTTGAG 3 cut(s) 207, 525, 725
BsaJI CCNNGG 2 cut(s) 129, 564
BsaXI ACNNNNNCTCC 2 cut(s) 1090, 1120
Bsc4I CCNNNNNNNGG 1 cut(s) 862
Bse118I RCCGGY 1 cut(s) 830
Bse1I ACTGG 3 cut(s) 1114, 1126, 1141
BseBI CCWGG 1 cut(s) 154
BseDI CCNNGG 2 cut(s) 129, 564
BseGI GGATG 2 cut(s) 195, 394
BseLI CCNNNNNNNGG 1 cut(s) 862
BseMII CTCAG 3 cut(s) 299, 365, 901
BseNI ACTGG 3 cut(s) 1114, 1126, 1141
BseRI GAGGAG 5 cut(s) 149, 210, 390, 835, 1111
BseXI GCAGC 2 cut(s) 276, 466
Bsh1236I CGCG 2 cut(s) 251, 593
BshFI GGCC 2 cut(s) 134, 830
BsiHKAI GWGCWC 1 cut(s) 503
BsiSI CCGG 1 cut(s) 831
BslFI GGGAC 3 cut(s) 254, 927, 1126
BslI CCNNNNNNNGG 1 cut(s) 862
BsmAI GTCTC 2 cut(s) 464, 813
BsmFI GGGAC 3 cut(s) 254, 927, 1126
BsmI GAATGC 2 cut(s) 623, 751
BsnI GGCC 2 cut(s) 134, 830
Bsp1286I GDGCHC 1 cut(s) 503
Bsp1407I TGTACA 1 cut(s) 312
Bsp143I GATC 4 cut(s) 226, 460, 973, 989
Bsp1720I GCTNAGC 1 cut(s) 887
Bsp19I CCATGG 2 cut(s) 129, 564
BspACI CCGC 6 cut(s) 117, 141, 251, 593, 871, 937
BspANI GGCC 2 cut(s) 134, 830
BspCNI CTCAG 3 cut(s) 298, 366, 900
BspFNI CGCG 2 cut(s) 251, 593
BspHI TCATGA 2 cut(s) 634, 816
BspLI GGNNCC 1 cut(s) 158
BspOI GCTAGC 2 cut(s) 203, 842
BspPI GGATC 1 cut(s) 997
BspQI GCTCTTC 1 cut(s) 689
BspTI CTTAAG 1 cut(s) 109
BsrFI RCCGGY 1 cut(s) 830
BsrGI TGTACA 1 cut(s) 312
BsrI ACTGG 3 cut(s) 1114, 1126, 1141
BssAI RCCGGY 1 cut(s) 830
BssECI CCNNGG 2 cut(s) 129, 564
BssMI GATC 4 cut(s) 226, 460, 973, 989
BssSI CACGAG 1 cut(s) 1035
BssT1I CCWWGG 2 cut(s) 129, 564
Bst2BI CACGAG 1 cut(s) 1035
Bst2UI CCWGG 1 cut(s) 154
Bst4CI ACNGT 2 cut(s) 212, 341
Bst6I CTCTTC 5 cut(s) 177, 689, 777, 996, 1088
BstAFI CTTAAG 1 cut(s) 109
BstAUI TGTACA 1 cut(s) 312
BstC8I GCNNGC 6 cut(s) 201, 258, 701, 798, 840, 884
BstDEI CTNAG 3 cut(s) 285, 374, 887
BstDSI CCRYGG 2 cut(s) 129, 564
BstF5I GGATG 2 cut(s) 195, 394
BstFNI CGCG 2 cut(s) 251, 593
BstH2I RGCGCY 1 cut(s) 797
BstHHI GCGC 1 cut(s) 796
BstKTI GATC 4 cut(s) 229, 463, 976, 992
BstMAI GTCTC 2 cut(s) 464, 813
BstMBI GATC 4 cut(s) 226, 460, 973, 989
BstMWI GCNNNNNNNGC 5 cut(s) 140, 257, 590, 879, 888
BstNI CCWGG 1 cut(s) 154
BstNSI RCATGY 1 cut(s) 886
BstSCI CCNGG 1 cut(s) 152
BstUI CGCG 2 cut(s) 251, 593
BstV1I GCAGC 2 cut(s) 276, 466
BstV2I GAAGAC 1 cut(s) 1037
BsuRI GGCC 2 cut(s) 134, 830
BtgI CCRYGG 2 cut(s) 129, 564
BtsCI GGATG 2 cut(s) 195, 394
BtsIMutI CAGTG 1 cut(s) 1140
Cac8I GCNNGC 6 cut(s) 201, 258, 701, 798, 840, 884
CciI TCATGA 2 cut(s) 634, 816
CfoI GCGC 1 cut(s) 796
Cfr10I RCCGGY 1 cut(s) 830
Cfr13I GGNCC 2 cut(s) 868, 904
CseI GACGC 1 cut(s) 590
Csp6I GTAC 5 cut(s) 313, 949, 1107, 1125, 1134
CviAII CATG 5 cut(s) 130, 565, 635, 817, 883
CviQI GTAC 5 cut(s) 313, 949, 1107, 1125, 1134
DdeI CTNAG 3 cut(s) 285, 374, 887
DpnI GATC 4 cut(s) 228, 462, 975, 991
DpnII GATC 4 cut(s) 226, 460, 973, 989
DrdI GACNNNNNNGTC 2 cut(s) 587, 875
DseDI GACNNNNNNGTC 2 cut(s) 587, 875
EaeI YGGCCR 1 cut(s) 132
Eam1104I CTCTTC 5 cut(s) 177, 689, 777, 996, 1088
EarI CTCTTC 5 cut(s) 177, 689, 777, 996, 1088
Ecl136II GAGCTC 1 cut(s) 501
Eco130I CCWWGG 2 cut(s) 129, 564
Eco24I GRGCYC 1 cut(s) 503
Eco32I GATATC 1 cut(s) 625
Eco47I GGWCC 2 cut(s) 868, 904
Eco47III AGCGCT 1 cut(s) 795
Eco53kI GAGCTC 1 cut(s) 501
Eco57I CTGAAG 2 cut(s) 282, 893
EcoICRI GAGCTC 1 cut(s) 501
EcoO109I RGGNCCY 1 cut(s) 904
EcoRII CCWGG 1 cut(s) 152
EcoRV GATATC 1 cut(s) 625
EcoT14I CCWWGG 2 cut(s) 129, 564
EcoT22I ATGCAT 1 cut(s) 649
EcoT38I GRGCYC 1 cut(s) 503
ErhI CCWWGG 2 cut(s) 129, 564
FaeI CATG 5 cut(s) 133, 568, 638, 820, 886
FalI AAGNNNNNCTT 2 cut(s) 92, 124
FaqI GGGAC 3 cut(s) 254, 927, 1126
FatI CATG 5 cut(s) 129, 564, 634, 816, 882
FbaI TGATCA 1 cut(s) 973
FblI GTMKAC 1 cut(s) 406
Fnu4HI GCNGC 2 cut(s) 290, 455
FokI GGATG 2 cut(s) 202, 381
FriOI GRGCYC 1 cut(s) 503
Fsp4HI GCNGC 2 cut(s) 290, 455
FspBI CTAG 8 cut(s) 75, 200, 369, 474, 839, 843, 986, 1158
GlaI GCGC 1 cut(s) 795
GluI GCNGC 2 cut(s) 290, 455
HaeII RGCGCY 1 cut(s) 797
HaeIII GGCC 2 cut(s) 134, 830
HapII CCGG 1 cut(s) 831
HgaI GACGC 1 cut(s) 590
HhaI GCGC 1 cut(s) 796
Hin1II CATG 5 cut(s) 133, 568, 638, 820, 886
Hin6I GCGC 1 cut(s) 794
HinP1I GCGC 1 cut(s) 794
HincII GTYRAC 2 cut(s) 407, 967
HindII GTYRAC 2 cut(s) 407, 967
HindIII AAGCTT 1 cut(s) 264
HinfI GANTC 8 cut(s) 62, 376, 382, 485, 668, 716, 806, 1033
HpaII CCGG 1 cut(s) 831
HphI GGTGA 2 cut(s) 349, 845
Hpy166II GTNNAC 3 cut(s) 407, 967, 1202
Hpy188I TCNGA 9 cut(s) 72, 337, 375, 381, 387, 490, 652, 721, 805
Hpy188III TCNNGA 8 cut(s) 59, 224, 230, 305, 542, 635, 817, 1177
Hpy8I GTNNAC 3 cut(s) 407, 967, 1202
Hpy99I CGWCG 2 cut(s) 16, 408
HpyAV CCTTC 3 cut(s) 256, 820, 917
HpyCH4III ACNGT 2 cut(s) 212, 341
HpyCH4IV ACGT 1 cut(s) 1068
HpyCH4V TGCA 4 cut(s) 647, 691, 773, 1066
HpyF10VI GCNNNNNNNGC 5 cut(s) 140, 257, 590, 879, 888
HpyF3I CTNAG 3 cut(s) 285, 374, 887
HpySE526I ACGT 1 cut(s) 1068
Hsp92II CATG 5 cut(s) 133, 568, 638, 820, 886
HspAI GCGC 1 cut(s) 794
Ksp22I TGATCA 1 cut(s) 973
Kzo9I GATC 4 cut(s) 226, 460, 973, 989
LguI GCTCTTC 1 cut(s) 689
LmnI GCTCC 4 cut(s) 162, 253, 506, 858
Lsp1109I GCAGC 2 cut(s) 276, 466
LweI GCATC 3 cut(s) 186, 547, 656
MaeI CTAG 8 cut(s) 75, 200, 369, 474, 839, 843, 986, 1158
MaeII ACGT 1 cut(s) 1068
MaeIII GTNAC 2 cut(s) 341, 758
MalI GATC 4 cut(s) 228, 462, 975, 991
MboI GATC 4 cut(s) 226, 460, 973, 989
MfeI CAATTG 1 cut(s) 585
MhlI GDGCHC 1 cut(s) 503
MlsI TGGCCA 1 cut(s) 134
MluCI AATT 5 cut(s) 51, 316, 518, 585, 752
MluNI TGGCCA 1 cut(s) 134
MlyI GAGTC 6 cut(s) 71, 385, 391, 725, 815, 1027
MmeI TCCRAC 4 cut(s) 95, 104, 189, 909
Mox20I TGGCCA 1 cut(s) 134
Mph1103I ATGCAT 1 cut(s) 649
MscI TGGCCA 1 cut(s) 134
MseI TTAA 3 cut(s) 110, 207, 1206
MslI CAYNNNNRTG 1 cut(s) 566
Msp20I TGGCCA 1 cut(s) 134
MspA1I CMGCKG 1 cut(s) 289
MspCI CTTAAG 1 cut(s) 109
MspI CCGG 1 cut(s) 831
MspR9I CCNGG 1 cut(s) 154
MunI CAATTG 1 cut(s) 585
Mva1269I GAATGC 2 cut(s) 623, 751
MvaI CCWGG 1 cut(s) 154
MvnI CGCG 2 cut(s) 251, 593
MwoI GCNNNNNNNGC 5 cut(s) 140, 257, 590, 879, 888
NcoI CCATGG 2 cut(s) 129, 564
NdeII GATC 4 cut(s) 226, 460, 973, 989
NheI GCTAGC 2 cut(s) 199, 838
NlaIII CATG 5 cut(s) 133, 568, 638, 820, 886
NlaIV GGNNCC 1 cut(s) 158
NsiI ATGCAT 1 cut(s) 649
NspI RCATGY 1 cut(s) 886
OliI CACNNNNGTG 1 cut(s) 566
PaeI GCATGC 1 cut(s) 886
PagI TCATGA 2 cut(s) 634, 816
PciSI GCTCTTC 1 cut(s) 689
PctI GAATGC 2 cut(s) 623, 751
PfeI GAWTC 2 cut(s) 485, 668
PkrI GCNGC 2 cut(s) 291, 456
PleI GAGTC 6 cut(s) 70, 384, 390, 724, 814, 1027
PpsI GAGTC 6 cut(s) 70, 384, 390, 724, 814, 1027
PpuMI RGGWCCY 1 cut(s) 904
Psp124BI GAGCTC 1 cut(s) 503
Psp5II RGGWCCY 1 cut(s) 904
Psp6I CCWGG 1 cut(s) 152
PspGI CCWGG 1 cut(s) 152
PspN4I GGNNCC 1 cut(s) 158
PspPI GGNCC 2 cut(s) 868, 904
PspPPI RGGWCCY 1 cut(s) 904
PsrI GAACNNNNNNTAC 2 cut(s) 932, 964
PvuII CAGCTG 1 cut(s) 289
RsaI GTAC 5 cut(s) 314, 950, 1108, 1126, 1135
RsaNI GTAC 5 cut(s) 313, 949, 1107, 1125, 1134
RseI CAYNNNNRTG 1 cut(s) 566
SacI GAGCTC 1 cut(s) 503
SalI GTCGAC 1 cut(s) 405
SapI GCTCTTC 1 cut(s) 689
SaqAI TTAA 3 cut(s) 110, 207, 1206
SatI GCNGC 2 cut(s) 290, 455
Sau3AI GATC 4 cut(s) 226, 460, 973, 989
Sau96I GGNCC 2 cut(s) 868, 904
ScaI AGTACT 1 cut(s) 950
SchI GAGTC 6 cut(s) 71, 385, 391, 725, 815, 1027
ScrFI CCNGG 1 cut(s) 154
SduI GDGCHC 1 cut(s) 503
SfaNI GCATC 3 cut(s) 186, 547, 656
SinI GGWCC 2 cut(s) 868, 904
SmiMI CAYNNNNRTG 1 cut(s) 566
SmlI CTYRAG 4 cut(s) 109, 222, 540, 704
SmoI CTYRAG 4 cut(s) 109, 222, 540, 704
SpeI ACTAGT 2 cut(s) 74, 368
SphI GCATGC 1 cut(s) 886
Sse9I AATT 5 cut(s) 51, 316, 518, 585, 752
SsiI CCGC 6 cut(s) 117, 141, 251, 593, 871, 937
SspMI CTAG 8 cut(s) 75, 200, 369, 474, 839, 843, 986, 1158
SstI GAGCTC 1 cut(s) 503
StyD4I CCNGG 1 cut(s) 152
StyI CCWWGG 2 cut(s) 129, 564
TaaI ACNGT 2 cut(s) 212, 341
TaiI ACGT 1 cut(s) 1071
TaqI TCGA 2 cut(s) 406, 674
TasI AATT 5 cut(s) 51, 316, 518, 585, 752
TatI WGTACW 2 cut(s) 312, 948
TfiI GAWTC 2 cut(s) 485, 668
Tru1I TTAA 3 cut(s) 110, 207, 1206
Tru9I TTAA 3 cut(s) 110, 207, 1206
TscAI CASTG 1 cut(s) 1147
TseI GCWGC 2 cut(s) 289, 454
TspDTI ATGAA 7 cut(s) 44, 206, 383, 623, 681, 805, 1106
TspRI CASTG 1 cut(s) 1147
Vha464I CTTAAG 1 cut(s) 109
VpaK11BI GGWCC 2 cut(s) 868, 904
XapI RAATTY 1 cut(s) 51
XceI RCATGY 1 cut(s) 886
XmiI GTMKAC 1 cut(s) 406
XspI CTAG 8 cut(s) 75, 200, 369, 474, 839, 843, 986, 1158
ZrmI AGTACT 1 cut(s) 950
Zsp2I ATGCAT 1 cut(s) 649
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.