Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0002133

Physical Location & Seq

Genomic Coordinates Reverse (-)

18235859 .. 18238619

Gene Structure 2761 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G242600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1170 bp

ATGACGGGGGATGTGTTGAAAAGAGCAAGATTGGAAACAGCAATCTGGGCTGCAAAGCTGTTACTGCTTTGTGTAGGGACAGTCTCCACTTTGGTATTCTTCAAAGCGGCAATCATTCCTTACCTTCTGAATCTCACTGTTTCCATCGTTCCCCAGCTATGGACCTCTTTCAAAAGCTGCTTCTTATCTCCACTTTACATCTACATCATCCTCAACTTCATCATCATCACCATTGCTGCCTCCTCCACATTCCAAAACCAAAAGCAACACCAGCAGCCCTCCTCCTCCTCTTCTTCTTCTTCTTCTTCTGTAGGCTTCAGCTCCTTCATTAGTGACAATGCAGCCAAAACCGCCGACAATATTGACAGTGGTAGCAATTATATCAATAGTCCAGACAACAACAACAGCAGCATCCAATCCGAGTCTCTGTCCCAGCAGCAACAGCAGCAGCCCAAAATCCAAAGTCATTCCAAAGACACAATCCAAAGTCTTTCCAAGGAGGATGTAACTGCTCTATTATTTTCTCCGTCCTCTCATGGCCACCCGAATAATGAAATGATGAGCTGGCATGACGTACACATAGTACAAGCTGATGATGGCAAACAAGAAGCAGCAGCAGAAGATGATGATGATGATGATCAGGGATTTGACCCTTCACCGGAAATGCCCTCCGGCGACTTGTTGACGAAATCTGTGGAGATGCCGAGGCTGGAGGTGGAGGTGGAGGTGGGAGAGGATATTAACACACTGGACACCACATGGAAGGCCATCATGGAGGGGCAAGGCAAGGCAATTGGTAAGCACCTAAAAAAGAGTGACACTTGGGACACCCCTCCTCGCTTAACCCAATTGGCCCTGACAAGGACTAAATTCAAAGGGGGTGCTGACCATCAATTACAATTACATCACTCTAACTTAGATGGTGATGATGGTGATAATGATGATGATGTTCATGGAGAGGATGATGCAGTGACATGGGCTCGTCGGGAGCTGAAGAAATCAGACACTTTTAGCGACAGGGTGTCGTTGAGAAGGGAAAAGTCCATGACTCAGGAAGAGTTGAACCAGCGAGCAGAGGCGTTCATCAAGAAGTTCAACAATGACATGAGGCTTCAGAGGCTAGAATCTGATCAACGCCGTTTCAGGGAGATTGTGAACGGTGGCCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4408 DUF761

Protein Analysis

390

Amino Acids

43.39

Weight (kDa)

5.01

Isoelectric Point (pI)

42.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002133)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48405 AT3G17680 AT3G17680 AT3G17680
fragaria_vesca	FvH4_5g18280 FvH4_5g18280 FvH4_5g18280 FvH4_5g18280 FvH4_5g18280 FvH4_5g18290
malus_domestica	MD06G1238400.v1.1 MD06G1238700.v1.1 MD14G1244700.v1.1 MD14G1244900.v1.1
prunus_persica	Prupe.5G242300_v2.0.a1 Prupe.5G242300_v2.0.a1 Prupe.5G242300_v2.0.a1 Prupe.5G242300_v2.0.a1 Prupe.5G242300_v2.0.a1 Prupe.5G242300_v2.0.a1 Prupe.5G242600_v2.0.a1
pyrus_communis	pycom06g21390 pycom06g21420 pycom14g20590
rosa_chinensis	RchiOBHm_Chr7g0177291 RchiOBHm_Chr7g0177301
rosa_laevigata	RLG00000005548
rosa_multiflora	Rmu_sc0005310.1_g000008
rosa_roxburghii	Rroxscaffold_3G00275960 Rroxscaffold_3G00275970
rosa_rugosa	Rorug06G0404500 Rorug06G0404600 Rorug06G0404700 Rorug06G0404800
rosa_samantha	Rh7AG004500 Rh7AG004600 Rh7BG004400 Rh7BG004500 Rh7CG004300 Rh7CG004400 Rh7DG004300 Rh7DG004400
rosa_wichuraiana	Rw7G000370 Rw7G000380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	107, 351
AcoI	YGGCCR	1 cut(s)	538
AcsI	RAATTY	1 cut(s)	869
AcuI	CTGAAG	3 cut(s)	301, 1013, 1097
AfaI	GTAC	2 cut(s)	576, 585
AfiI	CCNNNNNNNGG	4 cut(s)	159, 658, 861, 1144
AgsI	TTSAA	6 cut(s)	19, 103, 172, 874, 1063, 1096
AhdI	GACNNNNNGTC	1 cut(s)	1021
AluBI	AGCT	7 cut(s)	58, 157, 177, 321, 564, 590, 991
AluI	AGCT	7 cut(s)	58, 157, 177, 321, 564, 590, 991
Alw26I	GTCTC	2 cut(s)	88, 429
AoxI	GGCC	4 cut(s)	538, 765, 852, 1162
ApoI	RAATTY	1 cut(s)	869
AspS9I	GGNCC	2 cut(s)	162, 853
AsuHPI	GGTGA	4 cut(s)	220, 648, 935, 944
AvaII	GGWCC	1 cut(s)	162
BalI	TGGCCA	1 cut(s)	540
BanII	GRGCYC	1 cut(s)	982
BccI	CCATC	6 cut(s)	152, 590, 776, 897, 914, 923
BceAI	ACGGC	1 cut(s)	1122
BclI	TGATCA	2 cut(s)	637, 1129
BcoDI	GTCTC	2 cut(s)	88, 429
BfaI	CTAG	2 cut(s)	1121, 1168
BfmI	CTRYAG	1 cut(s)	309
Bme18I	GGWCC	1 cut(s)	162
BmeRI	GACNNNNNGTC	1 cut(s)	1021
BmgT120I	GGNCC	2 cut(s)	162, 853
BmsI	GCATC	3 cut(s)	420, 690, 955
BpmI	CTGGAG	1 cut(s)	731
BsaBI	GATNNNNATC	1 cut(s)	636
BsaJI	CCNNGG	2 cut(s)	495, 704
BsaWI	WCCGGW	1 cut(s)	658
Bsc4I	CCNNNNNNNGG	4 cut(s)	159, 658, 861, 1144
Bse1I	ACTGG	1 cut(s)	753
Bse3DI	GCAATG	1 cut(s)	231
Bse8I	GATNNNNATC	1 cut(s)	636
BseDI	CCNNGG	2 cut(s)	495, 704
BseGI	GGATG	5 cut(s)	16, 207, 411, 508, 967
BseJI	GATNNNNATC	1 cut(s)	636
BseLI	CCNNNNNNNGG	4 cut(s)	159, 658, 861, 1144
BseMI	GCAATG	1 cut(s)	231
BseMII	CTCAG	1 cut(s)	1064
BseNI	ACTGG	1 cut(s)	753
BseRI	GAGGAG	5 cut(s)	232, 271, 274, 277, 825
BseYI	CCCAGC	2 cut(s)	153, 432
BshFI	GGCC	4 cut(s)	540, 767, 854, 1164
BsiSI	CCGG	2 cut(s)	659, 672
BslFI	GGGAC	3 cut(s)	91, 415, 839
BslI	CCNNNNNNNGG	4 cut(s)	159, 658, 861, 1144
BsmAI	GTCTC	2 cut(s)	88, 429
BsmFI	GGGAC	3 cut(s)	91, 415, 839
BsnI	GGCC	4 cut(s)	540, 767, 854, 1164
Bsp1286I	GDGCHC	1 cut(s)	982
Bsp143I	GATC	2 cut(s)	637, 1129
BspACI	CCGC	2 cut(s)	107, 351
BspANI	GGCC	4 cut(s)	540, 767, 854, 1164
BspCNI	CTCAG	1 cut(s)	1063
BsrDI	GCAATG	1 cut(s)	231
BsrI	ACTGG	1 cut(s)	753
BssECI	CCNNGG	2 cut(s)	495, 704
BssMI	GATC	2 cut(s)	637, 1129
BssT1I	CCWWGG	1 cut(s)	495
Bst4CI	ACNGT	4 cut(s)	82, 139, 368, 1160
Bst6I	CTCTTC	2 cut(s)	295, 1050
BstC8I	GCNNGC	2 cut(s)	566, 1071
BstDEI	CTNAG	2 cut(s)	916, 1050
BstF5I	GGATG	5 cut(s)	16, 207, 411, 508, 967
BstKTI	GATC	2 cut(s)	640, 1132
BstMAI	GTCTC	2 cut(s)	88, 429
BstMBI	GATC	2 cut(s)	637, 1129
BstMWI	GCNNNNNNNGC	7 cut(s)	47, 64, 271, 350, 442, 445, 1117
BstSFI	CTRYAG	1 cut(s)	309
BsuRI	GGCC	4 cut(s)	540, 767, 854, 1164
BtsCI	GGATG	5 cut(s)	16, 207, 411, 508, 967
BtsI	GCAGTG	1 cut(s)	975
BtsIMutI	CAGTG	4 cut(s)	135, 373, 746, 975
Cac8I	GCNNGC	2 cut(s)	566, 1071
Cfr13I	GGNCC	2 cut(s)	162, 853
Csp6I	GTAC	2 cut(s)	575, 584
CviAII	CATG	8 cut(s)	536, 569, 759, 772, 953, 975, 1045, 1105
CviQI	GTAC	2 cut(s)	575, 584
DdeI	CTNAG	2 cut(s)	916, 1050
DpnI	GATC	2 cut(s)	639, 1131
DpnII	GATC	2 cut(s)	637, 1129
DriI	GACNNNNNGTC	1 cut(s)	1021
EaeI	YGGCCR	1 cut(s)	538
Eam1104I	CTCTTC	2 cut(s)	295, 1050
Eam1105I	GACNNNNNGTC	1 cut(s)	1021
EarI	CTCTTC	2 cut(s)	295, 1050
Eco130I	CCWWGG	1 cut(s)	495
Eco24I	GRGCYC	1 cut(s)	982
Eco47I	GGWCC	1 cut(s)	162
Eco57I	CTGAAG	3 cut(s)	301, 1013, 1097
EcoT14I	CCWWGG	1 cut(s)	495
EcoT38I	GRGCYC	1 cut(s)	982
ErhI	CCWWGG	1 cut(s)	495
FaeI	CATG	8 cut(s)	539, 572, 762, 775, 956, 978, 1048, 1108
FaqI	GGGAC	3 cut(s)	91, 415, 839
FatI	CATG	8 cut(s)	535, 568, 758, 771, 952, 974, 1044, 1104
FbaI	TGATCA	2 cut(s)	637, 1129
FokI	GGATG	5 cut(s)	23, 194, 398, 515, 974
FriOI	GRGCYC	1 cut(s)	982
FspBI	CTAG	2 cut(s)	1121, 1168
GsaI	CCCAGC	2 cut(s)	157, 436
GsuI	CTGGAG	1 cut(s)	731
HaeIII	GGCC	4 cut(s)	540, 767, 854, 1164
HapII	CCGG	2 cut(s)	659, 672
Hin1II	CATG	8 cut(s)	539, 572, 762, 775, 956, 978, 1048, 1108
HincII	GTYRAC	1 cut(s)	684
HindII	GTYRAC	1 cut(s)	684
HinfI	GANTC	4 cut(s)	130, 422, 1048, 1124
HpaII	CCGG	2 cut(s)	659, 672
HphI	GGTGA	4 cut(s)	220, 648, 935, 944
Hpy166II	GTNNAC	3 cut(s)	577, 684, 1156
Hpy188I	TCNGA	5 cut(s)	129, 421, 1003, 1116, 1129
Hpy188III	TCNNGA	4 cut(s)	392, 986, 1052, 1087
Hpy8I	GTNNAC	3 cut(s)	577, 684, 1156
Hpy99I	CGWCG	1 cut(s)	987
HpyAV	CCTTC	5 cut(s)	134, 334, 663, 757, 1026
HpyCH4III	ACNGT	4 cut(s)	82, 139, 368, 1160
HpyCH4IV	ACGT	1 cut(s)	573
HpyCH4V	TGCA	3 cut(s)	53, 341, 968
HpyF10VI	GCNNNNNNNGC	7 cut(s)	47, 64, 271, 350, 442, 445, 1117
HpyF3I	CTNAG	2 cut(s)	916, 1050
HpySE526I	ACGT	1 cut(s)	573
Hsp92II	CATG	8 cut(s)	539, 572, 762, 775, 956, 978, 1048, 1108
Ksp22I	TGATCA	2 cut(s)	637, 1129
Kzo9I	GATC	2 cut(s)	637, 1129
LmnI	GCTCC	2 cut(s)	326, 988
LweI	GCATC	3 cut(s)	420, 690, 955
MaeI	CTAG	2 cut(s)	1121, 1168
MaeII	ACGT	1 cut(s)	573
MaeIII	GTNAC	5 cut(s)	60, 332, 505, 815, 970
MalI	GATC	2 cut(s)	639, 1131
MboI	GATC	2 cut(s)	637, 1129
MfeI	CAATTG	2 cut(s)	792, 848
MhlI	GDGCHC	1 cut(s)	982
MlsI	TGGCCA	1 cut(s)	540
MluCI	AATT	6 cut(s)	376, 792, 848, 869, 893, 899
MluNI	TGGCCA	1 cut(s)	540
MlyI	GAGTC	2 cut(s)	431, 1042
Mox20I	TGGCCA	1 cut(s)	540
MscI	TGGCCA	1 cut(s)	540
MseI	TTAA	2 cut(s)	741, 842
Msp20I	TGGCCA	1 cut(s)	540
MspI	CCGG	2 cut(s)	659, 672
MunI	CAATTG	2 cut(s)	792, 848
MwoI	GCNNNNNNNGC	7 cut(s)	47, 64, 271, 350, 442, 445, 1117
NdeII	GATC	2 cut(s)	637, 1129
NlaIII	CATG	8 cut(s)	539, 572, 762, 775, 956, 978, 1048, 1108
NmeAIII	GCCGAG	1 cut(s)	729
NmuCI	GTSAC	3 cut(s)	332, 815, 970
PfeI	GAWTC	2 cut(s)	130, 1124
PleI	GAGTC	2 cut(s)	430, 1042
PpsI	GAGTC	2 cut(s)	430, 1042
PspFI	CCCAGC	2 cut(s)	153, 432
PspPI	GGNCC	2 cut(s)	162, 853
RsaI	GTAC	2 cut(s)	576, 585
RsaNI	GTAC	2 cut(s)	575, 584
SaqAI	TTAA	2 cut(s)	741, 842
Sau3AI	GATC	2 cut(s)	637, 1129
Sau96I	GGNCC	2 cut(s)	162, 853
SchI	GAGTC	2 cut(s)	431, 1042
SduI	GDGCHC	1 cut(s)	982
SfaNI	GCATC	3 cut(s)	420, 690, 955
SfcI	CTRYAG	1 cut(s)	309
SinI	GGWCC	1 cut(s)	162
Sse9I	AATT	6 cut(s)	376, 792, 848, 869, 893, 899
SsiI	CCGC	2 cut(s)	107, 351
SspI	AATATT	1 cut(s)	361
SspMI	CTAG	2 cut(s)	1121, 1168
StyI	CCWWGG	1 cut(s)	495
TaaI	ACNGT	4 cut(s)	82, 139, 368, 1160
TaiI	ACGT	1 cut(s)	576
TasI	AATT	6 cut(s)	376, 792, 848, 869, 893, 899
TatI	WGTACW	1 cut(s)	583
TauI	GCSGC	1 cut(s)	110
TfiI	GAWTC	2 cut(s)	130, 1124
Tru1I	TTAA	2 cut(s)	741, 842
Tru9I	TTAA	2 cut(s)	741, 842
TscAI	CASTG	4 cut(s)	142, 373, 753, 975
TseFI	GTSAC	3 cut(s)	332, 815, 970
Tsp45I	GTSAC	3 cut(s)	332, 815, 970
TspDTI	ATGAA	5 cut(s)	208, 316, 567, 941, 1072
TspGWI	ACGGA	1 cut(s)	516
TspRI	CASTG	4 cut(s)	142, 373, 753, 975
VpaK11BI	GGWCC	1 cut(s)	162
XapI	RAATTY	1 cut(s)	869
XspI	CTAG	2 cut(s)	1121, 1168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.