Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0002133

Physical Location & Seq

Genomic Coordinates Reverse (-)

32313269 .. 32314399

Gene Structure 1131 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1244900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

ATGATGGCGGATGCGTTCAAAAGAGGAAGACTGGAAACGGCAATCTGGGCAGCAAAGGTGTTGCTGCTTTGTGTAGGGACAGTGTCGACAGTGGTATTCTTCAAAGCAGCAATCATTCCTTACTTGCTCAACCTCTGTCTTTCCATCGTCCCTCACATCCGGACTTCTTTCAAAAACTGCTGCTCCTTATCTCCTCTTTACATCTACATCATCCTCAACTTTATCATCCTCACCATCGCTGCCTCCTCCGCTTTCCAACGCCAAAACCACAACCACAAGCACCACCTTTCCTCTTCTTCCGTTGCCTCCGGCGACACTACTAAAAACAATGCCAAGACCACTGACAACATTGACCCCTCTCACGATTTTATTTACAGTCCAGACAACAACACCGACAACAAGTACAACAGCAGCCAATCCCAGATGCTGTCCGCCCAGCCGCCGCAGCAGCAAGACAGATTATTCCAAAGTCATCCGGAAGATGATGCAACTTTTCTATTCTCTTCATCATCTCTAGACAACCATCCGTACACATTGAATAATGAGATGATCAGTTGGCATGACATTCACACAGTACAAGAAGGTGTAATTCCAAATACTATTCTCAGTACTAGTACTACTACCTTTGAGTATGATGATCATCAGCGATCTGGGCCTTCACCGGAAAAGTGCTGCGGTGACTCAATGCCAACGGAGGAGGAGGAGGTGGAGGCGGATGATGACACCAAGACATTGGACACGACATGGAAGGCCATCATGGATGGGCAAGGCAAGGCAAGCGGTAAGCACCTCAAAAAGAGTGACACTTGGGACACGCCTCCTCGCCTAACCGGCCGGCAATTGGCCATCACAAATACCAAATTCAAAGTCCCACAACGTCAATTGAATCAATGTAACTTGGATGATGATCACGATGACGAGGACGATGCAGTGACATGGGCTCGACGGGAGCTCAAGAAATCGGACACGTTTAGCGACAGAGTGTCTTTGAGAAGGCAAAAGTCGATGAGTCAGGAAGAGTTGAACCAGCGAGCAGAGGCCTTCATCAAGAAGATCAACAATGACATCAGACTTGAGAGGCTAGAATCTGATCAACGCCGTTTCAGGGAGATTGCTAGCACTGCCATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4408 DUF761

Protein Analysis

377

Amino Acids

42.66

Weight (kDa)

5.72

Isoelectric Point (pI)

42.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4408	PF14364	51 - 83	1.6e-06	Domain of unknown function (DUF4408)
DUF761	PF05553	338 - 370	4.7e-08	Cotton fibre expressed protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002133)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48405 AT3G17680 AT3G17680 AT3G17680
fragaria_vesca	FvH4_5g18280 FvH4_5g18280 FvH4_5g18280 FvH4_5g18280 FvH4_5g18280 FvH4_5g18290
malus_domestica	MD06G1238400.v1.1 MD06G1238700.v1.1 MD14G1244700.v1.1 MD14G1244900.v1.1
prunus_persica	Prupe.5G242300_v2.0.a1 Prupe.5G242300_v2.0.a1 Prupe.5G242300_v2.0.a1 Prupe.5G242300_v2.0.a1 Prupe.5G242300_v2.0.a1 Prupe.5G242300_v2.0.a1 Prupe.5G242600_v2.0.a1
pyrus_communis	pycom06g21390 pycom06g21420 pycom14g20590
rosa_chinensis	RchiOBHm_Chr7g0177291 RchiOBHm_Chr7g0177301
rosa_laevigata	RLG00000005548
rosa_multiflora	Rmu_sc0005310.1_g000008
rosa_roxburghii	Rroxscaffold_3G00275960 Rroxscaffold_3G00275970
rosa_rugosa	Rorug06G0404500 Rorug06G0404600 Rorug06G0404700 Rorug06G0404800
rosa_samantha	Rh7AG004500 Rh7AG004600 Rh7BG004400 Rh7BG004500 Rh7CG004300 Rh7CG004400 Rh7DG004300 Rh7DG004400
rosa_wichuraiana	Rw7G000370 Rw7G000380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	86
AccIII	TCCGGA	2 cut(s)	159, 475
AciI	CCGC	8 cut(s)	8, 249, 432, 440, 443, 675, 713, 780
AcoI	YGGCCR	2 cut(s)	832, 843
AcsI	RAATTY	1 cut(s)	860
AfaI	GTAC	5 cut(s)	404, 530, 576, 610, 616
AfiI	CCNNNNNNNGG	2 cut(s)	841, 1105
AflIII	ACRYGT	1 cut(s)	966
AgsI	TTSAA	7 cut(s)	19, 103, 172, 538, 865, 886, 1024
AhdI	GACNNNNNGTC	1 cut(s)	982
AhlI	ACTAGT	1 cut(s)	611
AluBI	AGCT	1 cut(s)	952
AluI	AGCT	1 cut(s)	952
Alw21I	GWGCWC	1 cut(s)	954
AlwNI	CAGNNNCTG	1 cut(s)	427
Aor13HI	TCCGGA	2 cut(s)	159, 475
AoxI	GGCC	5 cut(s)	653, 750, 832, 843, 1038
ApeKI	GCWGC	9 cut(s)	50, 64, 107, 180, 239, 411, 445, 448, 672
ApoI	RAATTY	1 cut(s)	860
ArsI	GACNNNNNNTTYG	2 cut(s)	852, 884
AspS9I	GGNCC	1 cut(s)	653
AsuHPI	GGTGA	3 cut(s)	223, 651, 689
AsuNHI	GCTAGC	1 cut(s)	1115
BalI	TGGCCA	1 cut(s)	845
BanII	GRGCYC	2 cut(s)	943, 954
BbsI	GAAGAC	1 cut(s)	34
Bbv12I	GWGCWC	1 cut(s)	954
BbvI	GCAGC	9 cut(s)	51, 62, 119, 167, 226, 423, 457, 460, 659
BccI	CCATC	6 cut(s)	152, 242, 531, 755, 761, 854
BceAI	ACGGC	2 cut(s)	54, 1083
BcgI	CGANNNNNNTGC	2 cut(s)	908, 942
BclI	TGATCA	4 cut(s)	549, 637, 907, 1090
BcuI	ACTAGT	1 cut(s)	611
BfaI	CTAG	4 cut(s)	515, 612, 1082, 1116
BglI	GCCNNNNNGGC	1 cut(s)	831
BmcAI	AGTACT	2 cut(s)	610, 616
BmeRI	GACNNNNNGTC	1 cut(s)	982
BmgT120I	GGNCC	1 cut(s)	653
BmsI	GCATC	3 cut(s)	414, 475, 916
BmtI	GCTAGC	1 cut(s)	1119
BpiI	GAAGAC	1 cut(s)	34
BpuEI	CTTGAG	2 cut(s)	938, 1094
BsaBI	GATNNNNATC	2 cut(s)	639, 906
BsaWI	WCCGGW	3 cut(s)	159, 475, 661
BsaXI	ACNNNNNCTCC	2 cut(s)	167, 197
Bsc4I	CCNNNNNNNGG	2 cut(s)	841, 1105
Bse118I	RCCGGY	2 cut(s)	830, 834
Bse1I	ACTGG	1 cut(s)	36
Bse8I	GATNNNNATC	2 cut(s)	639, 906
BseAI	TCCGGA	2 cut(s)	159, 475
BseGI	GGATG	9 cut(s)	16, 156, 210, 225, 472, 523, 721, 766, 907
BseJI	GATNNNNATC	2 cut(s)	639, 906
BseLI	CCNNNNNNNGG	2 cut(s)	841, 1105
BseMII	CTCAG	1 cut(s)	619
BseNI	ACTGG	1 cut(s)	36
BseRI	GAGGAG	6 cut(s)	183, 235, 710, 713, 716, 810
BseX3I	CGGCCG	1 cut(s)	832
BseXI	GCAGC	9 cut(s)	51, 62, 119, 167, 226, 423, 457, 460, 659
BseYI	CCCAGC	1 cut(s)	435
Bsh1285I	CGRYCG	1 cut(s)	835
BshFI	GGCC	5 cut(s)	655, 752, 834, 845, 1040
BsiEI	CGRYCG	1 cut(s)	835
BsiHKAI	GWGCWC	1 cut(s)	954
BsiSI	CCGG	6 cut(s)	160, 309, 476, 662, 831, 835
BslFI	GGGAC	4 cut(s)	91, 134, 824, 854
BslI	CCNNNNNNNGG	2 cut(s)	841, 1105
BsmFI	GGGAC	4 cut(s)	91, 134, 824, 854
BsnI	GGCC	5 cut(s)	655, 752, 834, 845, 1040
Bsp1286I	GDGCHC	2 cut(s)	943, 954
Bsp13I	TCCGGA	2 cut(s)	159, 475
Bsp143I	GATC	6 cut(s)	549, 637, 647, 907, 1053, 1090
BspACI	CCGC	8 cut(s)	8, 249, 432, 440, 443, 675, 713, 780
BspANI	GGCC	5 cut(s)	655, 752, 834, 845, 1040
BspCNI	CTCAG	1 cut(s)	618
BspEI	TCCGGA	2 cut(s)	159, 475
BspOI	GCTAGC	1 cut(s)	1119
BsrFI	RCCGGY	2 cut(s)	830, 834
BsrI	ACTGG	1 cut(s)	36
BssAI	RCCGGY	2 cut(s)	830, 834
BssMI	GATC	6 cut(s)	549, 637, 647, 907, 1053, 1090
Bst4CI	ACNGT	4 cut(s)	82, 91, 377, 574
Bst6I	CTCTTC	3 cut(s)	298, 508, 1011
BstC8I	GCNNGC	4 cut(s)	778, 836, 1032, 1117
BstDEI	CTNAG	1 cut(s)	605
BstF5I	GGATG	9 cut(s)	16, 156, 210, 225, 472, 523, 721, 766, 907
BstKTI	GATC	6 cut(s)	552, 640, 650, 910, 1056, 1093
BstMBI	GATC	6 cut(s)	549, 637, 647, 907, 1053, 1090
BstMCI	CGRYCG	1 cut(s)	835
BstMWI	GCNNNNNNNGC	8 cut(s)	47, 248, 445, 448, 652, 777, 831, 1121
BstV1I	GCAGC	9 cut(s)	51, 62, 119, 167, 226, 423, 457, 460, 659
BstV2I	GAAGAC	1 cut(s)	34
BstXI	CCANNNNNNTGG	1 cut(s)	733
BstZI	CGGCCG	1 cut(s)	832
BsuRI	GGCC	5 cut(s)	655, 752, 834, 845, 1040
BtgZI	GCGATG	1 cut(s)	220
BtsCI	GGATG	9 cut(s)	16, 156, 210, 225, 472, 523, 721, 766, 907
BtsI	GCAGTG	2 cut(s)	936, 1119
BtsIMutI	CAGTG	5 cut(s)	87, 96, 339, 936, 1119
Cac8I	GCNNGC	4 cut(s)	778, 836, 1032, 1117
CaiI	CAGNNNCTG	1 cut(s)	427
Cfr10I	RCCGGY	2 cut(s)	830, 834
Cfr13I	GGNCC	1 cut(s)	653
Csp6I	GTAC	5 cut(s)	403, 529, 575, 609, 615
CviAII	CATG	4 cut(s)	560, 744, 757, 936
CviQI	GTAC	5 cut(s)	403, 529, 575, 609, 615
DdeI	CTNAG	1 cut(s)	605
DpnI	GATC	6 cut(s)	551, 639, 649, 909, 1055, 1092
DpnII	GATC	6 cut(s)	549, 637, 647, 907, 1053, 1090
DriI	GACNNNNNGTC	1 cut(s)	982
EaeI	YGGCCR	2 cut(s)	832, 843
EagI	CGGCCG	1 cut(s)	832
Eam1104I	CTCTTC	3 cut(s)	298, 508, 1011
Eam1105I	GACNNNNNGTC	1 cut(s)	982
EarI	CTCTTC	3 cut(s)	298, 508, 1011
EciI	GGCGGA	3 cut(s)	23, 421, 728
Ecl136II	GAGCTC	1 cut(s)	952
EclXI	CGGCCG	1 cut(s)	832
Eco147I	AGGCCT	1 cut(s)	1040
Eco24I	GRGCYC	2 cut(s)	943, 954
Eco52I	CGGCCG	1 cut(s)	832
Eco53kI	GAGCTC	1 cut(s)	952
EcoICRI	GAGCTC	1 cut(s)	952
EcoT38I	GRGCYC	2 cut(s)	943, 954
FaeI	CATG	4 cut(s)	563, 747, 760, 939
FaiI	YATR	5 cut(s)	561, 633, 745, 758, 937
FaqI	GGGAC	4 cut(s)	91, 134, 824, 854
FatI	CATG	4 cut(s)	559, 743, 756, 935
FbaI	TGATCA	4 cut(s)	549, 637, 907, 1090
FblI	GTMKAC	1 cut(s)	86
FokI	GGATG	9 cut(s)	23, 143, 197, 212, 459, 510, 728, 773, 914
FriOI	GRGCYC	2 cut(s)	943, 954
FspBI	CTAG	4 cut(s)	515, 612, 1082, 1116
GsaI	CCCAGC	1 cut(s)	439
HaeIII	GGCC	5 cut(s)	655, 752, 834, 845, 1040
HapII	CCGG	6 cut(s)	160, 309, 476, 662, 831, 835
Hin1II	CATG	4 cut(s)	563, 747, 760, 939
HincII	GTYRAC	1 cut(s)	87
HindII	GTYRAC	1 cut(s)	87
HinfI	GANTC	4 cut(s)	680, 886, 1009, 1085
HpaII	CCGG	6 cut(s)	160, 309, 476, 662, 831, 835
HphI	GGTGA	3 cut(s)	223, 651, 689
Hpy166II	GTNNAC	2 cut(s)	87, 531
Hpy188I	TCNGA	3 cut(s)	964, 1070, 1090
Hpy188III	TCNNGA	9 cut(s)	160, 362, 380, 476, 515, 911, 955, 1013, 1048
Hpy8I	GTNNAC	2 cut(s)	87, 531
Hpy99I	CGWCG	1 cut(s)	948
HpyAV	CCTTC	5 cut(s)	575, 666, 742, 987, 1051
HpyCH4III	ACNGT	4 cut(s)	82, 91, 377, 574
HpyCH4IV	ACGT	2 cut(s)	877, 968
HpyCH4V	TGCA	2 cut(s)	488, 929
HpyF10VI	GCNNNNNNNGC	8 cut(s)	47, 248, 445, 448, 652, 777, 831, 1121
HpyF3I	CTNAG	1 cut(s)	605
HpySE526I	ACGT	2 cut(s)	877, 968
Hsp92II	CATG	4 cut(s)	563, 747, 760, 939
Kpn2I	TCCGGA	2 cut(s)	159, 475
KroI	GCCGGC	1 cut(s)	834
KroNI	GCCGGC	1 cut(s)	836
Ksp22I	TGATCA	4 cut(s)	549, 637, 907, 1090
Kzo9I	GATC	6 cut(s)	549, 637, 647, 907, 1053, 1090
LmnI	GCTCC	2 cut(s)	188, 949
Lsp1109I	GCAGC	9 cut(s)	51, 62, 119, 167, 226, 423, 457, 460, 659
LweI	GCATC	3 cut(s)	414, 475, 916
MaeI	CTAG	4 cut(s)	515, 612, 1082, 1116
MaeII	ACGT	2 cut(s)	877, 968
MaeIII	GTNAC	4 cut(s)	677, 800, 893, 931
MalI	GATC	6 cut(s)	551, 639, 649, 909, 1055, 1092
MboI	GATC	6 cut(s)	549, 637, 647, 907, 1053, 1090
MboII	GAAGA	8 cut(s)	39, 91, 285, 288, 491, 495, 1028, 1063
MfeI	CAATTG	2 cut(s)	839, 881
MhlI	GDGCHC	2 cut(s)	943, 954
MlsI	TGGCCA	1 cut(s)	845
MluCI	AATT	4 cut(s)	588, 839, 860, 881
MluNI	TGGCCA	1 cut(s)	845
MlyI	GAGTC	2 cut(s)	674, 1018
MmeI	TCCRAC	1 cut(s)	280
Mox20I	TGGCCA	1 cut(s)	845
MroI	TCCGGA	2 cut(s)	159, 475
MroNI	GCCGGC	1 cut(s)	834
MscI	TGGCCA	1 cut(s)	845
Msp20I	TGGCCA	1 cut(s)	845
MspI	CCGG	6 cut(s)	160, 309, 476, 662, 831, 835
MunI	CAATTG	2 cut(s)	839, 881
MwoI	GCNNNNNNNGC	8 cut(s)	47, 248, 445, 448, 652, 777, 831, 1121
NaeI	GCCGGC	1 cut(s)	836
NdeII	GATC	6 cut(s)	549, 637, 647, 907, 1053, 1090
NgoMIV	GCCGGC	1 cut(s)	834
NheI	GCTAGC	1 cut(s)	1115
NlaIII	CATG	4 cut(s)	563, 747, 760, 939
NmuCI	GTSAC	3 cut(s)	677, 800, 931
PceI	AGGCCT	1 cut(s)	1040
PdiI	GCCGGC	1 cut(s)	836
PfeI	GAWTC	2 cut(s)	886, 1085
PflFI	GACNNNGTC	1 cut(s)	82
PleI	GAGTC	2 cut(s)	674, 1017
PpsI	GAGTC	2 cut(s)	674, 1017
Psp124BI	GAGCTC	1 cut(s)	954
PspFI	CCCAGC	1 cut(s)	435
PspPI	GGNCC	1 cut(s)	653
PstNI	CAGNNNCTG	1 cut(s)	427
PsyI	GACNNNGTC	1 cut(s)	82
RsaI	GTAC	5 cut(s)	404, 530, 576, 610, 616
RsaNI	GTAC	5 cut(s)	403, 529, 575, 609, 615
SacI	GAGCTC	1 cut(s)	954
SalI	GTCGAC	1 cut(s)	85
Sau3AI	GATC	6 cut(s)	549, 637, 647, 907, 1053, 1090
Sau96I	GGNCC	1 cut(s)	653
ScaI	AGTACT	2 cut(s)	610, 616
SchI	GAGTC	2 cut(s)	674, 1018
SduI	GDGCHC	2 cut(s)	943, 954
SfaNI	GCATC	3 cut(s)	414, 475, 916
SmlI	CTYRAG	2 cut(s)	953, 1073
SmoI	CTYRAG	2 cut(s)	953, 1073
SpeI	ACTAGT	1 cut(s)	611
Sse9I	AATT	4 cut(s)	588, 839, 860, 881
SseBI	AGGCCT	1 cut(s)	1040
SsiI	CCGC	8 cut(s)	8, 249, 432, 440, 443, 675, 713, 780
SspMI	CTAG	4 cut(s)	515, 612, 1082, 1116
SstI	GAGCTC	1 cut(s)	954
StuI	AGGCCT	1 cut(s)	1040
TaaI	ACNGT	4 cut(s)	82, 91, 377, 574
TaiI	ACGT	2 cut(s)	880, 971
TaqI	TCGA	3 cut(s)	86, 943, 1004
TasI	AATT	4 cut(s)	588, 839, 860, 881
TatI	WGTACW	4 cut(s)	402, 574, 608, 614
TauI	GCSGC	2 cut(s)	442, 445
TfiI	GAWTC	2 cut(s)	886, 1085
TscAI	CASTG	5 cut(s)	87, 96, 346, 936, 1126
TseFI	GTSAC	3 cut(s)	677, 800, 931
TseI	GCWGC	9 cut(s)	50, 64, 107, 180, 239, 411, 445, 448, 672
Tsp45I	GTSAC	3 cut(s)	677, 800, 931
TspDTI	ATGAA	2 cut(s)	495, 1033
TspGWI	ACGGA	3 cut(s)	289, 516, 707
TspRI	CASTG	5 cut(s)	87, 96, 346, 936, 1126
Tth111I	GACNNNGTC	1 cut(s)	82
XapI	RAATTY	1 cut(s)	860
XbaI	TCTAGA	1 cut(s)	514
XmiI	GTMKAC	1 cut(s)	86
XspI	CTAG	4 cut(s)	515, 612, 1082, 1116
ZrmI	AGTACT	2 cut(s)	610, 616

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.